An excess of deleterious variants in VEGF-A pathway genes in down-syndrome-associated atrioventricular septal defects, Am. J. Hum. Genet, vol.91, pp.646-659, 2012. ,
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana, Cell, vol.166, pp.481-491, 2016. ,
Mendelian disorders and multifactorial traits: the big divide or one for all?, Nat. Rev. Genet, vol.11, pp.380-384, 2010. ,
The search for modifier genes in Huntington disease -Multifactorial aspects of a monogenic disorder, Mol. Cell. Probes, vol.30, pp.404-409, 2016. ,
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines, Nature, vol.465, pp.627-631, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00468440
A global reference for human genetic variation, Nature, vol.526, pp.68-74, 2015. ,
Huntington disease, Nat. Rev. Dis. Prim, vol.1, p.15005, 2015. ,
Mendel's principles of heredity, 1909. ,
The landscape of somatic copy-number alteration across human cancers, Nature, vol.463, pp.899-905, 2010. ,
Extensive mitochondrial population structure and haplotype-specific phenotypic variation in the Drosophila Genetic Reference Panel, 2018. ,
NovoGraph: Human genome graph construction from multiple long-read de novo assemblies, 1391. ,
A genetic interaction map of cell cycle regulators, Mol. Biol. Cell, vol.27, pp.1397-1407, 2016. ,
Finding the sources of missing heritability in a yeast cross, Nature, vol.494, pp.234-237, 2013. ,
Genetic interactions contribute less than additive effects to quantitative trait variation in yeast, Nat. Commun, vol.6, p.8712, 2015. ,
Rare variants contribute disproportionately to quantitative trait variation in yeast, 2019. ,
An Expanded View of Complex Traits: From Polygenic to Omnigenic, 2017. ,
Linkage and association mapping of Arabidopsis thaliana flowering time in nature, PLoS Genet, vol.6, p.40, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00468455
The landscape of genetic complexity across 5,700 gene expression traits in yeast, Proc. Natl. Acad. Sci, vol.102, pp.1572-1577, 2005. ,
Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk, Nat. Commun, vol.10, p.2680, 2019. ,
A global analysis of genetic interactions in Caenorhabditis elegans, J. Biol, vol.6, 2007. ,
Speciation through cytonuclear incompatibility: Insights from yeast and implications for higher eukaryotes, BioEssays, vol.32, pp.401-411, 2010. ,
Candidate genetic modifiers of retinitis pigmentosa identified by exploiting natural variation in Drosophila, Hum. Mol. Genet, vol.25, pp.651-659, 2016. ,
Origins and functional impact of copy number variation in the human genome, Nature, vol.464, pp.704-712, 2010. ,
CeNDR, the Caenorhabditis elegans natural diversity resource, Nucleic Acids Res, vol.45, pp.650-657, 2017. ,
The genetic landscape of a cell, Science, vol.327, pp.425-431, 2010. ,
A global genetic interaction network maps a wiring diagram of cellular function, Science, p.353, 1420. ,
Genomewide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls, Nature, vol.464, pp.713-720, 2010. ,
Mapping and phasing of structural variation in patient genomes using nanopore sequencing, Nat. Commun, vol.8, p.1326, 2017. ,
Modifier genes in Mendelian disorders: The example of cystic fibrosis, Ann. N. Y. Acad. Sci, vol.1214, pp.57-69, 2010. ,
Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast, Genetics, vol.169, pp.1915-1925, 2005. ,
, Genome Assembly of the Dekkera bruxellensis Yeast Isolate Using Nanopore MinION Sequencing. G3 (Bethesda), vol.7, 2017.
Fragile X syndrome, Eur. J. Hum. Genet, vol.16, pp.666-672, 2008. ,
Most genetic risk for autism resides with common variation, Nat. Genet, vol.46, pp.881-885, 2014. ,
Functional profiling of the Saccharomyces cerevisiae genome, Nature, vol.418, pp.387-391, 2002. ,
Rare and common variants: Twenty arguments, Nat. Rev. Genet, vol.13, pp.135-145, 2012. ,
Life with 6000 genes, Science, vol.274, pp.546-567, 1996. ,
Picky comprehensively detects high-resolution structural variants in nanopore long reads, Nat. Methods, vol.15, pp.455-460, 2018. ,
Genome wide association analysis in a mouse advanced intercross line, Nat. Commun, vol.9, p.5162, 2018. ,
Mutations in endothelin 1 cause recessive auriculocondylar syndrome and dominant isolated question-mark ears, Am. J. Hum. Genet, vol.93, pp.1118-1125, 2013. ,
Shifting Paradigm of Association Studies: Value of Rare Single-Nucleotide Polymorphisms, Am. J. Hum. Genet, vol.82, pp.100-112, 2008. ,
Genetic effects on gene expression across human tissues, Nature, vol.550, pp.204-213, 2017. ,
Skin Cancer Concerns in People of Color: Risk Factors and Prevention. Asian Pac, J. Cancer Prev, vol.17, pp.5257-5264, 2016. ,
A Genetic Variant Associated with Five Vascular Diseases Is a Distal Regulator of Endothelin-1 Gene Expression, Cell, vol.170, pp.522-533, 2017. ,
A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts, Hum. Genomics, vol.13, p.6, 2019. ,
Powerful decomposition of complex traits in a diploid model, Nat. Commun, vol.7, p.13311, 2016. ,
SSUI mediates sulphite efflux in Saccharomyces cerevisiae, Yeast, vol.16, pp.881-888, 2000. ,
Genetic complexity in a Drosophila model of diabetes-associated misfolded human proinsulin, Genetics, vol.196, pp.539-555, 2014. ,
Retinitis Pigmentosa: Genes and Disease Mechanisms, Curr. Genomics, vol.12, pp.238-249, 2011. ,
Neurofibromatosis type 1: From genotype to phenotype, J. Med. Genet, vol.49, pp.483-489, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00552390
Quantitative Trait Nucleotides Impacting the Technological Performances of Industrial Saccharomyces cerevisiae, Strains. Front. Genet, vol.10, p.683, 2019. ,
The Interaction of Genetic Background and Mutational Effects in Regulation of Mouse Craniofacial Shape, G3 Genes, vol.7, pp.1439-1450, 2017. ,
Molecular characterization of a chromosomal rearrangement involved in the adaptie evolution of yeast strains, 2002. ,
, Genome Res, vol.12, pp.1533-1539
, Genome evolution across, vol.1, p.11, 2018.
, Saccharomyces cerevisiae isolates. Nature, vol.556, pp.339-344
Replication and explorations of High-Order epistasis using a large advanced intercross line pedigree, PLoS Genet, vol.7, p.1002180, 2011. ,
Adaptive potential of genomic structural variation in human and mammalian evolution, Brief. Funct. Genomics, vol.14, pp.358-368, 2015. ,
Cystic fibrosis, Nat. Rev. Dis. Prim, vol.1, p.15010, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-00614855
Genetics of Hair and Skin Color, Annu. Rev. Genet, vol.37, pp.67-90, 2003. ,
The QTN program and the alleles that matter for evolution: All that's gold does not glitter, Evolution (N. Y), vol.66, pp.1-17, 2012. ,
Recombinational landscape and population genomics of caenorhabditis elegans, PLoS Genet, vol.5, p.1000419, 2009. ,
Selection at linked sites shapes heritable phenotypic variation in C. elegans. Science (80-. ), vol.330, pp.372-376, 2010. ,
CFTR, SPINK1, CTRC and PRSS1 variants in chronic pancreatitis: Is the role of mutated CFTR overestimated?, Gut, vol.62, pp.582-592, 2013. ,
Detecting high-order epistasis in nonlinear genotype-phenotype maps, Genetics, vol.205, pp.1079-1088, 2017. ,
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana, Cell, vol.166, pp.481-491, 2016. ,
A global reference for human genetic variation, Nature, vol.526, pp.68-74, 2015. ,
Finding the sources of missing heritability in a yeast cross, Nature, vol.494, pp.234-237, 2013. ,
Genetic interactions contribute less than additive effects to quantitative trait variation in yeast, Nat. Commun, vol.6, p.8712, 2015. ,
Rare variants contribute disproportionately to quantitative trait variation in yeast, 2019. ,
Missing heritability and strategies for finding the underlying causes of complex disease, Nat. Rev. Genet, vol.11, pp.446-450, 2010. ,
Rare and common variants: Twenty arguments, Nat. Rev. Genet, vol.13, pp.135-145, 2012. ,
Concept of General and Specific Combining Ability in Relation to Diallel Crossing Systems, Aust. J. Biol. Sci, vol.9, pp.463-493, 1956. ,
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits, Proc. Natl. Acad. Sci, vol.106, pp.9362-9367, 2009. ,
The Hidden Complexity of Mendelian Traits across Natural Yeast Populations, Cell Rep, vol.16, pp.1106-1114, 2016. ,
Complex modifier landscape underlying genetic background effects, Proc. Natl. Acad. Sci, vol.116, pp.5045-5054, 2019. ,
FaST linear mixed models for genome-wide association studies, Nat. Methods, vol.8, pp.833-835, 2011. ,
Heterosis: revisiting the magic, Trends Genet, vol.23, pp.60-66, 2007. ,
The Drosophila melanogaster Genetic Reference Panel, Nature, vol.482, pp.173-178, 2012. ,
The genetics of quantitative traits: challenges and prospects, Nat. Rev. Genet, vol.10, pp.565-577, 2009. ,
Finding the missing heritability of complex diseases, Nature, vol.461, pp.747-753, 2009. ,
Quantitative Trait Nucleotides Impacting the Technological Performances of Industrial Saccharomyces cerevisiae, Strains. Front. Genet, vol.10, p.683, 2019. ,
Genome evolution across 1,011 Saccharomyces cerevisiae isolates, Nature, vol.556, pp.339-344, 2018. ,
URL : https://hal.archives-ouvertes.fr/cea-01872910
Are Rare Variants Responsible for Susceptibility to Complex Diseases?, Am. J. Hum. Genet, vol.69, pp.124-137, 2002. ,
Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids, Proc. Natl. Acad. Sci. U. S. A, vol.113, pp.7317-7326, 2016. ,
Contrasting the Genetic Architecture of 30 Complex Traits from Summary Association Data, Am. J. Hum. Genet, vol.99, pp.139-153, 2016. ,
Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis, Nat. Genet, vol.44, pp.483-489, 2012. ,
10 Years of GWAS Discovery: Biology, Function, and Translation, Am. J. Hum. Genet, vol.101, pp.5-22, 2017. ,
Recovery of trait heritability from whole genome sequence data, Trans-Omics for Precision Medicine Consortium, vol.588020, 2019. ,
The UK10K project identifies rare variants in health and disease, Nature, vol.526, pp.82-90, 2015. ,
Further improvements to linear mixed models for genome-wide association studies, 2014. ,
Defining the role of common variation in the genomic and biological architecture of adult human height, Nat. Genet, vol.46, pp.1173-1186, 2014. ,
Life History Shapes Trait Heredity by Accumulation of Loss-of-Function Alleles in Yeast, Mol. Biol. Evol, vol.29, pp.1781-1789, 2012. ,
Searching for missing heritability: designing rare variant association studies, Proc. Natl. Acad. Sci. U. S. A, vol.111, pp.455-464, 2014. ,
The genetic basis of truncate wing -An inconstant and modifiable character in Drosophila, Genetics, vol.5, pp.1-59, 1920. ,
Mendelian disorders and multifactorial traits: the big divide or one for all?, Nat. Rev. Genet, vol.11, pp.380-384, 2010. ,
Divergent evolution of duplicate genes leads to genetic incompatibilities within A. thaliana. Science (80-. ), vol.323, pp.623-626, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-01203956
Chromosomal variation segregates within incipient species and correlates with reproductive isolation, Mol. Ecol, vol.23, pp.4362-4372, 2014. ,
Candidate genetic modifiers of retinitis pigmentosa identified by exploiting natural variation in Drosophila, Hum. Mol. Genet, vol.25, pp.651-659, 2016. ,
A Computational Approach to Estimating Nondisjunction Frequency in Saccharomyces cerevisiae. G3 (Bethesda), vol.6, pp.669-682, 2016. ,
, , 1900.
, Gregor Mendels Regel über das Verhalten der Nachkommenschaft der Bastarde, Berichte Des Dtsch. Bot. Gesellschaft, pp.158-168
A global genetic interaction network maps a wiring diagram of cellular function, Science, p.353, 1420. ,
Genetic backgrounds and hidden trait complexity in natural populations, Curr. Opin. Genet. Dev, vol.47, pp.48-53, 2017. ,
Extensive impact of low-frequency variants on the phenotypic landscape at population-scale, BioRxiv, vol.609917, 2019. ,
The Dip Test of Unimodality, Ann. Stat, vol.13, pp.70-84, 1985. ,
Chromosomal rearrangements as a major mechanism in the onset of reproductive isolation in Saccharomyces cerevisiae, Curr. Biol, vol.24, pp.1153-1159, 2014. ,
Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast, Nat. Commun, vol.6, p.7214, 2015. ,
The Hidden Complexity of Mendelian Traits across Natural Yeast Populations, Cell Rep, vol.16, pp.1106-1114, 2016. ,
Species-wide survey reveals the various flavors of intraspecific reproductive isolation in yeast, FEMS Yeast Res, vol.16, 2016. ,
DNA mismatch repair: Functions and mechanisms, Chem. Rev, vol.106, pp.302-323, 2006. ,
Wild worm embryogenesis harbors ubiquitous polygenic modifier variation, 2015. ,
Genome evolution across 1,011 Saccharomyces cerevisiae isolates, Nature, vol.556, pp.339-344, 2018. ,
URL : https://hal.archives-ouvertes.fr/cea-01872910
Widespread genetic incompatibility in C. elegans maintained by balancing selection, vol.319, pp.589-594, 2008. ,
Using Kernel Density Estimates to Investigate Multimodality, J. R. Stat. Soc. Ser. B, vol.43, pp.97-99, 1981. ,
Ueber künstliche Kreuzung bei Pisum sativum, Berichte Des Dtsch. Bot. Gesellschaft, vol.18, pp.232-239, 1900. ,
Sur la fécondation hybride de l'albumen, Biol. Zent. Bl, vol.20, pp.129-130, 1900. ,
Double-strand breaks associated with repetitive DNA can reshape the genome, Proc. Natl. Acad. Sci. U. S. A, 2008. ,
Brettanomyces bruxellensis population survey reveals a diploid-triploid complex structured according to substrate of isolation and geographical distribution, Sci. Rep, vol.8, p.4136, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01900511
Assembling large genomes with single-molecule sequencing and localitysensitive hashing, Nat. Biotechnol, vol.33, pp.623-630, 2015. ,
Positive and negative regulatory elements control expression of the yeast retrotransposon Ty3, Genetics, 1993. ,
Insights into the Dekkera bruxellensis genomic landscape: comparative genomics reveals variations in ploidy and nutrient utilisation potential amongst wine isolates, PLoS Genet, vol.10, p.1004161, 2014. ,
The origin of ethylphenols in wines, J. Sci. Food Agric, vol.60, pp.165-178, 1992. ,
Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae, EMBO Rep, 2004. ,
Assessing genetic diversity among Brettanomyces yeasts by DNA fingerprinting and wholegenome sequencing, Appl. Environ. Microbiol, vol.80, pp.4398-4413, 2014. ,
Genomic insights into the evolution of industrial yeast species Brettanomyces bruxellensis, FEMS Yeast Res, vol.14, pp.997-1005, 2014. ,
De-novo assembly and analysis of the heterozygous triploid genome of the wine spoilage yeast Dekkera bruxellensis AWRI1499, PLoS One, vol.7, p.33840, 2012. ,
6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae, Curr. Genet, 1992. ,
Complex nature of the genome in a wine spoilage yeast, Dekkera bruxellensis, Eukaryot. Cell, vol.8, pp.1739-1749, 2009. ,
Chromosomal rearrangements as a major mechanism in the onset of reproductive isolation in Saccharomyces cerevisiae, Curr. Biol, vol.24, pp.1153-1159, 2014. ,
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer, vol.6, pp.1-13, 2017. ,
The Oxford Nanopore MinION: Delivery of nanopore sequencing to the genomics community, Genome Biol, vol.17, p.239, 2016. ,
Assembly of long, error-prone reads using repeat graphs, Nat. Biotechnol, vol.37, pp.540-546, 2019. ,
Canu: Scalable and accurate long-read assembly via adaptive ?-mer weighting and repeat separation, Genome Res, vol.27, pp.722-736, 2017. ,
Versatile and open software for comparing large genomes, Genome Biol, vol.5, p.12, 2004. ,
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences, Bioinformatics, vol.32, pp.2103-2110, 2016. ,
Assembly of long error-prone reads using de Bruijn graphs, Proc. Natl. Acad. Sci. U. S. A, vol.113, pp.8396-8405, 2016. ,
Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil, Genetics, 2006. ,
The genetics of non-conventional wine yeasts: Current knowledge and future challenges, Front. Microbiol, vol.6, p.1563, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01900544
Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo, Mol. Cell, 2005. ,
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data, Genome Res, vol.20, pp.1297-1303, 2010. ,
Widespread Impact of Chromosomal Inversions on Gene Expression Uncovers Robustness via Phenotypic Buffering, Mol. Biol. Evol, 2016. ,
De novo assembly of Dekkera bruxellensis: A multi technology approach using short and long-read sequencing and optical mapping, vol.4, p.56, 2015. ,
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes, Bioinformatics, vol.23, pp.1061-1067, 2007. ,
Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms, PLoS Genet, 2008. ,
Genome evolution across 1,011 Saccharomyces cerevisiae isolates, Nature, vol.556, pp.339-344, 2018. ,
URL : https://hal.archives-ouvertes.fr/cea-01872910
The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties, Int. J. Food Microbiol, vol.157, pp.202-209, 2012. ,
Mutations in the second largest subunit of RNA polymerase II cause 6-azauracil sensitivity in yeast and increased transcriptional arrest in vitro, J. Biol. Chem, 1996. ,
Fast and accurate long-read assembly with wtdbg2, BioRxiv, vol.530972, 2019. ,
The wine and beer yeast Dekkera bruxellensis, Yeast, vol.31, pp.323-332, 2014. ,
Structural variation in the 3D genome, Nat. Rev. Genet, vol.19, pp.453-467, 2018. ,
The Microbial Diversity of Traditional Spontaneously Fermented Lambic Beer, PLoS One, vol.9, p.95384, 2014. ,
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement, PLoS One, vol.9, 2014. ,
Contrasting evolutionary genome dynamics between domesticated and wild yeasts, Nat. Genet, vol.49, pp.913-924, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01546021
Allele specific PCR was performed on colonies that lost the plasmid, 24h then replica plated to YPD supplemented with 200 µg.ml -1 hygromycin to check for plasmid loss, p.1, 1993. ,
, Seakem GTC agarose and 0.5x TBE gel. PFGE was conducted with the CHEF
, DRII (BioRad) system following: 6 V/cm for 10 run, vol.2
, The 95 strains were assembled using the LRSDAY pipeline, 2018.
Filtlong), removing all reads below 1,000 bp and having a mean Q-score (PHRED score) below 10. Final subsample represented a coverage of 40x, Briefly, raw reads were basecalled and demultiplexed using Guppy (v2.3.5). Selection of the best set of reads was done with Fitlong, vol.3, 2017. ,
CRISPR reshuffled strains were assembled using LRSDAY pipeline, 2018. ,
2009) using the option "view -f 4 -c". Then, CEGMA (v2.5) (Parra et al., 2007) was run in order to recover and assess the number of ultraconserved eukaryotic genes as they are, GATK (v3.3, 2010. ,
Detecting bimodality in astronomical datasets, Astron. J, 1994. ,
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale, Nat. Methods, 2010. ,
On the Modes of a Mixture of Two Normal Distributions, Technometrics, vol.12, pp.131-139, 1970. ,
Assembling large genomes with single-molecule sequencing and localitysensitive hashing, Nat. Biotechnol, vol.33, pp.623-630, 2015. ,
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information, BMC Bioinformatics, vol.15, p.211, 2014. ,
Second-generation PLINK: rising to the challenge of larger and richer datasets, vol.4, p.7, 2015. ,
Concept of General and Specific Combining Ability in Relation to Diallel Crossing Systems, Aust. J. Biol. Sci, vol.9, pp.463-493, 1956. ,
A likelihood ratio test for bimodality in twocomponent mixtures with application to regional income distribution in the EU, AStA Adv. Stat. Anal, vol.92, pp.57-69, 2008. ,
Chromosomal rearrangements as a major mechanism in the onset of reproductive isolation in Saccharomyces cerevisiae, Curr. Biol, vol.24, pp.1153-1159, 2014. ,
Assembly of long, error-prone reads using repeat graphs, Nat. Biotechnol, vol.37, pp.540-546, 2019. ,
Canu: Scalable and accurate long-read assembly via adaptive ?-mer weighting and repeat separation, Genome Res, vol.27, pp.722-736, 2017. ,
Versatile and open software for comparing large genomes, Genome Biol, vol.5, p.12, 2004. ,
FactoMineR : An R Package for Multivariate Analysis, J. Stat. Softw, vol.25, pp.1-18, 2008. ,
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences, Bioinformatics, vol.32, pp.2103-2110, 2016. ,
Fast and accurate long-read alignment with Burrows-Wheeler transform, Bioinformatics, vol.26, pp.589-595, 2010. ,
The Sequence Alignment/Map format and SAMtools, Genome Project Data Processing Subgroup, vol.25, pp.2078-2079, 2009. ,
Assembly of long error-prone reads using de Bruijn graphs, Proc. Natl. Acad. Sci. U. S. A, vol.113, pp.8396-8405, 2016. ,
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data, Genome Res, vol.20, pp.1297-1303, 2010. ,
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes, Bioinformatics, vol.23, pp.1061-1067, 2007. ,
Genome evolution across 1,011 Saccharomyces cerevisiae isolates, Nature, vol.556, pp.339-344, 2018. ,
URL : https://hal.archives-ouvertes.fr/cea-01872910
Good things peak in pairs: A note on the bimodality coefficient. Front. Psychol. 4, 700, 2013. ,
Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids, Proc. Natl. Acad. Sci. U. S. A, vol.113, pp.7317-7326, 2016. ,
Use of electrophoretic karyotyping and DNA-DNA hybridization in yeast identification, Int. J. Food Microbiol, 1993. ,
gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images. G3, Genes|Genomes|Genetics, vol.4, pp.547-552, 2014. ,
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement, PLoS One, vol.9, 2014. ,
WASP: A Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations, BMC Genomics, vol.8, p.275, 2007. ,
Further improvements to linear mixed models for genome-wide association studies, 2014. ,
Long-read sequencing data analysis for yeasts, Nat. Protoc, vol.13, pp.1213-1231, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-02381498
Population dynamics of the segregation distorter polymorphism of Drosophila melanogaster, Genetics, vol.89, pp.171-192, 1978. ,
Genetics and the origin of species, 1937. ,
Mitochondrial genetics. IX. A model for recombination and segregation of mitochondrial genomes in Saccharomyces cerevisiae, Genetics, vol.78, pp.415-437, 1974. ,
A new case of transmission ratio distortion in the house mouse, Proc. Natl. Acad. Sci, vol.61, pp.570-573, 1968. ,
A genomewide map of mitochondrial DNA recombination in yeast, Genetics, vol.198, pp.755-771, 2014. ,
Concept of General and Specific Combining Ability in Relation to Diallel Crossing Systems, Aust. J. Biol. Sci, vol.9, pp.463-493, 1956. ,
Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast, Nat. Commun, vol.6, p.7214, 2015. ,
Mitochondrial recombination and introgression during speciation by hybridization, Mol. Biol. Evol, vol.34, pp.1947-1959, 2017. ,
Investigating incipient speciation in Arabidopsis lyrata from patterns of transmission ratio distortion, Genetics, 2013. ,
Transmission Ratio Distortion in Mice, Annu. Rev. Genet, 2003. ,
High-dimensional and large-scale phenotyping of yeast mutants, Proc. Natl. Acad. Sci, vol.102, pp.19015-19020, 1942. ,
Quantification of cell, actin, and nuclear DNA morphology with high-throughput microscopy and calmorph, Cold Spring Harb. Protoc, 2015. ,
Mitochondrial-nuclear epistasis contributes to phenotypic variation and coadaptation in natural isolates of Saccharomyces cerevisiae, Genetics, vol.198, pp.1251-1265, 2014. ,
Genome evolution across 1,011 Saccharomyces cerevisiae isolates, Nature, vol.556, pp.339-344, 2018. ,
URL : https://hal.archives-ouvertes.fr/cea-01872910
Meiotic Drive as an Evolutionary Force, Am. Nat, vol.91, pp.105-110, 1957. ,
Widespread genetic incompatibility in C. elegans maintained by balancing selection, vol.319, pp.589-594, 2008. ,
Transmission ratio distortion is frequent in Arabidopsis thaliana controlled crosses, Heredity (Edinb), vol.122, pp.294-304, 2019. ,
Mitochondrial recombination reveals mito-mito epistasis in yeast, Genetics, vol.209, pp.307-319, 2018. ,
Extensive impact of low-frequency variants on the phenotypic landscape at population-scale. (Elife, In revision) -Available as a preprint in BioRxiv Fleiss, Reshuffling yeast chromosomes with CRIPSR/Cas9, 2019. ,
High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Isolate Using Nanopore MinION Sequencing. G3 (Bethesda), vol.7, 2017. ,
Genetic backgrounds and hidden trait complexity in natural populations, Curr. Opin. Genet. Dev, vol.47, pp.48-53, 2017. ,
The Hidden Complexity of Mendelian Traits across Natural Yeast Populations, Cell Rep, vol.16, pp.1106-1114, 2016. ,
, , 2016.
, , 2018.