E. Coli and .. .. ,

. .. Watson, , vol.5

, Major and minor grooves bases patterns

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. .. Amino, , p.9

, Illustration of the solvent accessible surface

. .. , Induced fit, conformational selection and allostery, vol.18

. .. , 20 1.14 Y family DNA polymerase conformational changes and binding promiscuity

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. .. Asymmetric, 32 1.17 Example of mismatch between asymmetric unit and biological assembly in a PDB file

. .. , Multiple sequence alignment and conservation, p.39

. .. , Experimental interface definition by the Levy's model

, Examples of tree trace levels

.. .. Interface,

. .. , Signals detected in experimental interfaces, p.70

. .. , 73 2.10 Summary of iJET 2 DNA , DISPLAR and multiVORFFIP performance . 76 2.11 iJET 2 DNA predictions on proteins presenting multiple DNA-binding sites 80 2.12 DISPLAR predictions on proteins presenting multiple DNA-binding sites

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, Comparison of interface propensity values for protein-RNA and protein-DNA complexes

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, Three different conformations of RNA bound on KsgA methyltransferase, vol.100

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, Screenshot of the webpage of the Y-family DNA polymerase database entry

. .. Example-of-the-y-family-dna-polymerase-database-entry, 117 4.4 Examples of DNA-binding sites on protein structures partially shared with other protein partners

. .. Examples, 120 4.6 Example of inhibitors designed from the hyperthermophilic chromosomal protein Sac7d template

, Example of conformational changes needed to accomplish the protein function during the binding to the same partner, p.124

A. , Signals detected at interface of DNA-binding proteins in the bound and unbound forms

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