D. Ackermann and G. Schmitz, Detection and Tracking of Multiple Microbubbles in Ultrasound B-Mode Images, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.63, pp.72-82, 2016.

A. Austeng and S. Holm, Sparse 2-D arrays for 3-D phased array imaging -design methods, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.49, pp.1073-1086, 2002.

J. Bercoff and . Minin, Ultrafast Ultrasound Imaging, Ultrafast Ultrasound Imaging, Ultrasound Imaging -Medical Applications, p.23, 2011.

J. Bercoff, M. Tanter, and M. Fink, Supersonic shear imaging: a new technique for soft tissue elasticity mapping, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.51, pp.396-409, 2004.

A. Besson, D. Perdios, Y. Wiaux, and J. Thiran, Joint Sparsity With Partially Known Support and Application to Ultrasound Imaging, IEEE Signal Process. Lett, vol.26, pp.84-88, 2019.

E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych et al., Imaging Intracellular Fluorescent Proteins at Nanometer Resolution, Science, vol.313, pp.1642-1645, 2006.

O. Bonnefous and P. Pesque, Time Domain Formulation of Pulse-Doppler Ultrasound and Blood Velocity Estimation by Cross Correlation 13, 1986.

J. F. Brinkley, W. E. Moritz, and D. W. Baker, Ultrasonic three-dimensional imaging and volume from a series of arbitrary sector scans, Ultrasound Med. Biol, vol.4, pp.317-321, 1978.

J. F. Brinkley, S. K. Muramatsu, D. Mccallum, and R. L. Popp, VITRO EVALUATION OF AN ULTRASONIC THREE-DIMENSIONAL IMAGING AND VOLUME, vol.14

C. Bruneel, B. Nongaillard, R. Torguet, E. Bridoux, and J. M. Rouvaen, Reconstruction of an acoustical image using an 'acousto-electronic' lens device, Ultrasonics, vol.15, pp.263-264, 1977.

C. Bruneel, R. Torguet, K. M. Rouvaen, E. Bridoux, and B. Nongaillard, Ultrafast echotomographic system using optical processing of ultrasonic signals, Appl Phys Lett, vol.30, p.4, 1977.

S. S. Brunke and G. R. Lockwood, Broad-bandwidth radiation patterns of sparse twodimensional vernier arrays, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.44, pp.1101-1109, 1997.

K. Christensen-jeffries, R. J. Browning, M. Tang, C. Dunsby, and R. J. Eckersley, In Vivo Acoustic Super-Resolution and Super-Resolved Velocity Mapping Using Microbubbles, IEEE Trans. Med. Imaging, vol.34, pp.433-440, 2015.

,

T. L. Christiansen, M. F. Rasmussen, J. P. Bagge, L. N. Moesner, J. A. Jensen et al., 3-D imaging using row-column-addressed arrays with integrated, 2015.

D. Ackermann and G. Schmitz, Detection and Tracking of Multiple Microbubbles in Ultrasound B-Mode Images, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.63, pp.72-82, 2016.

G. S. Alberti, H. Ammari, F. Romero, and T. Wintz, Dynamic Spike Super-resolution and Applications to Ultrafast Ultrasound Imaging, 2018.

N. Banterle, K. H. Bui, E. A. Lemke, M. ;. Beck, C. Tremblay-darveau et al., Fast Vascular Ultrasound Imaging With Enhanced Spatial Resolution and Background Rejection, J. Struct. Biol. 5. Bar-Zion, vol.36, pp.169-180, 2013.

,

V. Bondur, Y. Grebenyuk, E. Ezhova, A. Kandaurov, D. Sergeev et al., Applying of PIV/PTV Methods for Physical Modeling of the Turbulent Buoyant Jets in a Stratified Fluid 23, 2019.

A. Bouakaz, S. Frigstad, F. J. Ten-cate, J. De, and N. , Super harmonic imaging: a new imaging technique for improved contrast detection, Ultrasound Med. Biol, vol.28, pp.59-68, 2002.

K. Christensen-jeffries, R. J. Browning, M. Tang, C. Dunsby, and R. J. Eckersley, In Vivo Acoustic Super-Resolution and Super-Resolved Velocity Mapping Using Microbubbles, IEEE Trans. Med. Imaging, vol.34, pp.433-440, 2015.

,

K. Christensen-jeffries, S. Harput, J. Brown, P. N. Wells, P. Aljabar et al., Microbubble Axial Localization Errors in Ultrasound Super-Resolution Imaging, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.64, pp.1644-1654, 2017.

M. Cikes, J. D'hooge, and S. D. Solomon, Physical Principles of Ultrasound and Generation of Images, Essential Echocardiography, pp.1-15, 2019.

O. Couture, S. Bannouf, G. Montaldo, J. Aubry, M. Fink et al., Ultrafast Imaging of Ultrasound Contrast Agents, Ultrasound Med. Biol, vol.35, pp.1908-1916, 2009.

O. Couture, B. Besson, G. Montaldo, M. Fink, and M. Tanter, Microbubble ultrasound super-localization imaging (MUSLI), pp.1285-1287, 2011.

N. De-jong, M. Emmer, A. Van-wamel, and M. Versluis, Ultrasonic characterization of ultrasound contrast agents, Med. Biol. Eng. Comput, vol.47, pp.861-873, 2009.

C. Demene, T. Deffieux, M. Pernot, B. Osmanski, V. Biran et al., Spatiotemporal Clutter Filtering of Ultrafast Ultrasound Data Highly Increases Doppler and fUltrasound Sensitivity, IEEE Trans. Med. Imaging, vol.34, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01541361

O. Solomon, R. J. Van-sloun, H. Wijkstra, M. Mischi, and Y. C. Eldar, Exploiting flow dynamics for super-resolution in contrast-enhanced ultrasound, 2018.

P. Song, A. Manduca, J. D. Trzasko, R. E. Daigle, and S. Chen, On the Effects of Spatial Sampling Quantization in Super-Resolution Ultrasound Microvessel Imaging, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.65, pp.2264-2276, 2018.

P. Song, J. D. Trzasko, A. Manduca, R. Huang, R. Kadirvel et al., Improved Super-Resolution Ultrasound Microvessel Imaging With Spatiotemporal Nonlocal Means Filtering and Bipartite Graph-Based Microbubble Tracking, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.65, pp.149-167, 2018.

P. Song, J. D. Trzasko, A. Manduca, R. Huang, R. Kadirvel et al., Improved Super-Resolution Ultrasound Microvessel Imaging With Spatiotemporal Nonlocal Means Filtering and Bipartite Graph-Based Microbubble Tracking, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.65, pp.149-167, 2018.

E. Tiran, T. Deffieux, M. Correia, D. Maresca, B. Osmanski et al., Multiplane wave imaging increases signal-to-noise ratio in ultrafast ultrasound imaging, Phys. Med. Biol, vol.60, pp.8549-8566, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01541359

, Similarity measures between images, Photographic Lenses. Van Heel, M, vol.21, pp.90010-90016, 1951.

O. M. Viessmann, R. J. Eckersley, K. Christensen-jeffries, M. X. Tang, and C. Dunsby, Acoustic super-resolution with ultrasound and microbubbles, Phys. Med. Biol, vol.58, pp.6447-6458, 2013.

S. S. Welch, Effects of Window Size and Shape on Accuracy of Subpixel Centroid Estimation of Target Images, NASA Tech. Pap, p.39, 1993.

S. R. Wilson and P. N. Burns, Microbubble-enhanced US in Body Imaging: What Role? <sup/>, Radiology, vol.257, pp.24-39, 2010.

M. Yang, Y. El-haj, A. J. Then, K. Y. Liu, and K. , Characterizing the viscoelastic properties of thin hydrogel-based constructs for tissue engineering applications, Developping new techniques to achieve faster, better, cheaper Ultrasound Localization Microscopy Ahearne, vol.2, pp.455-463, 2005.

,

J. Baranger, B. Arnal, F. Perren, O. Baud, M. Tanter et al., Adaptive Spatiotemporal SVD Clutter Filtering for Ultrafast Doppler Imaging Using Similarity of Spatial Singular Vectors, IEEE Trans. Med. Imaging, vol.37, pp.1574-1586, 2018.

O. Casula and D. Royer, Visualisation des champs ultrasonores par interférométrie hétérodyne, J. Phys. IV, vol.04, pp.5-1217, 1994.

,

K. Christensen-jeffries, S. Harput, J. Brown, P. N. Wells, P. Aljabar et al., Microbubble Axial Localization Errors in Ultrasound Super-Resolution Imaging, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.64, pp.1644-1654, 2017.

K. Christensen-jeffries and M. Tang, 3-D In Vitro Acoustic Super-Resolution and Super-Resolved Velocity Mapping Using Microbubbles 9, 2016.

O. Couture, B. Besson, G. Montaldo, M. Fink, and M. Tanter, Microbubble ultrasound super-localization imaging (MUSLI), pp.1285-1287, 2011.

O. Couture, V. Hingot, B. Heiles, P. Muleki-seya, and M. Tanter, Ultrasound localization microscopy and super-resolution: a state-of-the-art, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, pp.1-1, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02344318

,

C. Demene, T. Deffieux, M. Pernot, B. Osmanski, V. Biran et al., Spatiotemporal Clutter Filtering of Ultrafast Ultrasound Data Highly Increases Doppler and fUltrasound Sensitivity, IEEE Trans. Med. Imaging, vol.34, pp.2271-2285, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01541361

Y. Desailly, O. Couture, M. Fink, and M. Tanter, Sono-activated ultrasound localization microscopy, Appl. Phys. Lett, vol.103, p.174107, 2013.

Y. Desailly, J. Pierre, O. Couture, and M. Tanter, Resolution limits of ultrafast ultrasound localization microscopy, Phys. Med. Biol, vol.60, pp.8723-8740, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02008651

E. T. Lee, Choosing nodes in parametric curve interpolation, Comput.-Aided Des, vol.21, pp.363-370, 1989.

C. Errico, J. Pierre, S. Pezet, Y. Desailly, Z. Lenkei et al., Ultrafast ultrasound localization microscopy for deep super-resolution vascular imaging, Nature, vol.527, pp.499-502, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02007890

J. Foiret, H. Zhang, T. Ilovitsh, L. Mahakian, S. Tam et al., Ultrasound localization microscopy to image and assess microvasculature in a rat kidney, Sci. Rep, 2017.

B. Heiles, M. Correia, V. Hingot, M. Pernot, J. Provost et al., Ultrafast 3D Ultrasound Localization Microscopy using a 32x32 Matrix Array. Accept, IEEE Trans. Med. Imaging, vol.13, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02344374

R. Henriques, M. Lelek, E. F. Fornasiero, F. Valtorta, C. Zimmer et al., QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ, Nat. Methods, vol.7, pp.339-340, 2010.
URL : https://hal.archives-ouvertes.fr/pasteur-02081312

. Hingot, . Vincent, . Errico, . Claudia, . Heiles et al., Microvascular flow dictates the compromise between spatial resolution and acquisition time in ultrasound localization microscopy, 2018.

K. Hoyer, M. Holzner, B. Lüthi, M. Guala, A. Liberzon et al., 3D scanning particle tracking velocimetry, Exp. Fluids, vol.39, pp.923-934, 2005.

F. Lin, S. E. Shelton, D. Espíndola, J. D. Rojas, G. Pinton et al., 3-D Ultrasound Localization Microscopy for Identifying Microvascular Morphology Features of Tumor Angiogenesis at a Resolution Beyond the Diffraction Limit of Conventional Ultrasound, Theranostics, vol.7, pp.196-204, 2017.

,

B. Lüthi, A. Tsinober, and W. Kinzelbach, Lagrangian measurement of vorticity dynamics in turbulent flow, J. Fluid Mech, vol.528, pp.87-118, 2005.

,

G. Montaldo, M. Tanter, J. Bercoff, N. Benech, and M. Fink, Coherent plane-wave compounding for very high frame rate ultrasonography and transient elastography, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.56, pp.489-506, 2009.

J. Provost, C. Papadacci, J. E. Arango, M. Imbault, M. Fink et al., 3D ultrafast ultrasound imaging in vivo, Phys. Med. Biol, vol.59, pp.1-13, 2014.

M. Schneider, Characteristics of SonoVue TM, Echocardiography, vol.16, pp.743-746, 1999.

P. Song, A. Manduca, J. D. Trzasko, R. E. Daigle, and S. Chen, On the Effects of Spatial Sampling Quantization in Super-Resolution Ultrasound Microvessel Imaging, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.65, pp.2264-2276, 2018.

P. Song, J. D. Trzasko, A. Manduca, R. Huang, R. Kadirvel et al., Improved Super-Resolution Ultrasound Microvessel Imaging With Spatiotemporal Nonlocal Means Filtering and Bipartite Graph-Based Microbubble Tracking, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.65, pp.149-167, 2018.

E. Talu, R. L. Powell, M. L. Longo, and P. A. Dayton, American College of Laboratory Animal Medicine series, 2012. Nonhuman primates in biomedical research, 2008.

P. Arbeille, V. Eder, D. Casset, L. Quillet, C. Hudelo et al., Real-time 3-D ultrasound acquisition and display for cardiac volume and ejection fraction evaluation, Ultrasound Med. Biol, vol.26, pp.125-133, 2000.

A. Austeng and S. Holm, Sparse 2-D arrays for 3-D phased array imaging -design methods, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.49, pp.1073-1086, 2002.

C. Boni, M. Richard, and S. Barbarossa, Optimal configuration and weighting of nonuniform arrays according to a maximum ISLR criterion, Proceedings of ICASSP '94. IEEE International Conference on Acoustics, Speech and Signal Processing, 1994.

S. S. Brunke and G. R. Lockwood, Broad-bandwidth radiation patterns of sparse twodimensional vernier arrays, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.44, pp.1101-1109, 1997.

T. Buck and B. Plicht, Real-Time Three-Dimensional Echocardiographic Assessment of Severity of Mitral Regurgitation Using Proximal Isovelocity Surface Area and Vena Contracta Area Method, Lessons We Learned and Clinical Implications, vol.11, 2015.

K. Chen, L. Hae-seung, G. Charles, and . Sodini, A Column-Row-Parallel ASIC Architecture for 3-D Portable Medical Ultrasonic Imaging, IEEE J. Solid-State Circuits, vol.51, pp.738-751, 2016.

T. L. Christiansen, M. F. Rasmussen, J. P. Bagge, L. N. Moesner, J. A. Jensen et al., 3-D imaging using row-column-addressed arrays with integrated apodization-part ii: transducer fabrication and experimental results, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.62, pp.959-971, 2015.

,

K. Chung, J. Wallace, S. Kim, S. Kalyanasundaram, A. S. Andalman et al., Structural and molecular interrogation of intact biological systems, Nature, vol.497, pp.332-337, 2013.

R. W. Coatney, Ultrasound Imaging: Principles and Applications in Rodent Research 42, p.15, 2001.

R. S. Cobbold, Foundations of Biomedical Ultrasound, vol.14, 2005.

C. Constantinides, R. Mean, and B. J. Janssen, Effects of Isoflurane Anesthesia on the Cardiovascular Function of the C57BL/6 Mouse 20, 2012.

T. J. Czernuszewicz, V. Papadopoulou, J. D. Rojas, R. M. Rajamahendiran, J. Perdomo et al., A new preclinical ultrasound platform for widefield 3D imaging of rodents, Rev Sci Instrum, vol.10, 2018.

J. K. Dave, Recent technological advancements in cardiac ultrasound imaging 12, 2018.

R. E. Davidsen, J. A. Jensen, and S. W. Smith, Two-dimensional random arrays for real time volumetric imaging, Ultrason. Imaging, 1994.

C. Demené, E. Tiran, L. Sieu, A. Bergel, J. L. Gennisson et al., 4D microvascular imaging based on ultrafast Doppler tomography, NeuroImage, vol.127, pp.472-483, 2016.

,

Y. Desailly, J. Pierre, O. Couture, and M. Tanter, Resolution limits of ultrafast ultrasound localization microscopy, Phys. Med. Biol, vol.60, pp.8723-8740, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02008651

H. Dong, The Allen reference atlas : A digital color brain atlas of the C57Bl/6J male mouse, 2008.

A. Ertürk, K. Becker, N. Jährling, C. P. Mauch, C. D. Hojer et al., Three-dimensional imaging of solventcleared organs using 3DISCO, Nat. Protoc, vol.7, 1983.

,

A. Ertürk and F. Bradke, High-resolution imaging of entire organs by 3-dimensional imaging of solvent cleared organs (3DISCO), Exp. Neurol, vol.242, pp.57-64, 2013.

R. Fisher, K. Thomenius, R. Wodnicki, R. Thomas, S. Cogan et al., Reconfigurable arrays for portable ultrasound, IEEE Ultrasonics Symposium, 2005. Presented at the IEEE Ultrasonics Symposium, pp.495-499, 2005.

M. Flesch, M. Pernot, J. Provost, G. Ferin, A. Nguyen-dinh et al., 4D in vivo ultrafast ultrasound imaging using a row-column addressed matrix and coherently-compounded orthogonal plane waves, Phys. Med. Biol, vol.62, pp.4571-4588, 2017.

K. B. Franklin and G. Paxinos, Paxinos and Franklin's : The mouse brain in stereotaxic coordinates, 2013.

S. Holm, B. Elgetun, and G. Dahl, Properties of the beampattern of weight-and layout-optimized sparse arrays, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.44, pp.983-991, 1997.

J. A. Jensen, H. Holten-lund, R. T. Nilsson, M. Hansen, U. D. Larsen et al., SARUS: A synthetic aperture real-time ultrasound system, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.60, pp.1838-1852, 2013.

R. M. Lang, L. P. Badano, V. Mor-avi, J. Afilalo, A. Armstrong et al., Recommendations for Cardiac Chamber Quantification by Echocardiography in Adults: An Update from the American Society of Echocardiography and the European Association of Cardiovascular Imaging, J. Am. Soc. Echocardiogr, vol.28, pp.1-39, 2015.

J. Law and P. B. Macbeth, Ultrasound: From Earth to Space, vol.13, p.4, 2011.

C. Li, S. Patel, D. J. Wang, and X. Zhang, Effect of high dose isoflurane on cerebral blood flow in macaque monkeys, Magn. Reson. Imaging, vol.32, pp.956-960, 2014.

A. S. Logan, L. L. Wong, A. I. Chen, and J. T. Yeow, A 32 x 32 element rowcolumn addressed capacitive micromachined ultrasonic transducer, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.58, pp.1266-1271, 2011.

,

J. B. Madsen, G. E. Cold, E. S. Hansen, and B. Bardrum, The Effect of Isoflurane on Cerebral Blood Flow and Metabolism in Humans during Craniotomy for Small Supratentorial Cerebral Tumors, Anesthesiology, 1987.

O. Martínez-graullera, C. J. Martín, G. Godoy, and L. G. Ullate, 2D array design based on Fermat spiral for ultrasound imaging, Ultrasonics, vol.50, pp.280-289, 2010.

G. Matrone, A. S. Savoia, M. Terenzi, G. Caliano, F. Quaglia et al., A volumetric CMUT-based ultrasound imaging system simulator with integrated reception and ?-beamforming electronics models, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.61, pp.792-804, 2014.

,

O. T. Von-ramm, S. W. Smith, and H. G. Pavy, High-speed Ultrasound Volumetric Imaging System-Part II: Parallel Processing and Image Display, 1991.

E. O&apos;mahony, E. Araujo-junior, A. C. Fereira, and F. Da-silva-costa, Telemedicine 3D-and 4D-ultrasound in Obstetrics and Gynecology, Advanced Topics on Three-Dimensional Ultrasound in Obstetrics and Gynecology, pp.47-61, 2016.

C. Papadacci, E. A. Bunting, E. Y. Wan, P. Nauleau, and E. E. Konofagou, , p.3, 2017.

C. Papadacci, V. Finel, J. Provost, O. Villemain, P. Bruneval et al., Imaging the dynamics of cardiac fiber orientation in vivo using 3D, Ultrasound Backscatter Tensor Imaging. Sci. Rep, vol.36, 2017.

C. Papadacci, V. Finel, O. Villemain, G. Goudot, J. Provost et al., 4D simultaneous tissue and blood flow Doppler imaging: revisiting cardiac Doppler index with single heart beat 4D ultrafast echocardiography, Phys. Med. Biol, vol.64, p.85013, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02386238

M. Pernot, M. Tanter, and M. Fink, 3-D real-time motion correction in high-intensity focused ultrasound therapy, Ultrasound Med. Biol, vol.30, pp.1239-1249, 2004.
URL : https://hal.archives-ouvertes.fr/inserm-00468901

L. Petrusca, F. Varray, R. Souchon, A. Bernard, J. Chapelon et al., Fast Volumetric Ultrasound B-Mode and Doppler Imaging with a New High-Channels Density Platform for Advanced 4D Cardiac Imaging, Therapy. Appl. Sci, vol.8, 0200.
URL : https://hal.archives-ouvertes.fr/hal-01699658

R. W. Prager, U. Z. Ijaz, A. H. Gee, and G. M. Treece, Three-dimensional ultrasound imaging, Proc. Inst. Mech. Eng, vol.224, pp.193-223, 2010.

,

J. Provost, C. Papadacci, J. E. Arango, M. Imbault, M. Fink et al., 3D ultrafast ultrasound imaging in vivo, Phys. Med. Biol, vol.59, pp.1-13, 2014.

C. Rabut, M. Correia, V. Finel, S. Pezet, M. Pernot et al., 4D functional ultrasound imaging of whole-brain activity in rodents, Nat. Methods, vol.16, pp.994-997, 2019.

S. N. Ramadas, J. C. Jackson, J. Dziewierz, R. O&apos;leary, and A. Gachagan, Application of conformal map theory for design of 2-D ultrasonic array structure for ndt imaging application: a feasibility study, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.61, pp.496-504, 2014.

A. Ramalli, E. Boni, A. S. Savoia, and P. Tortoli, Density-tapered spiral arrays for ultrasound 3-D imaging, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.62, pp.1580-1588, 2015.

M. F. Rasmussen, T. L. Christiansen, E. V. Thomsen, and J. A. Jensen, 3-D imaging using row-column-addressed arrays with integrated apodization -part i: apodization design and line element beamforming, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.62, pp.947-958, 2015.

,

M. F. Rasmussen and J. A. Jensen, 3D ultrasound imaging performance of a rowcolumn addressed 2D array transducer: a simulation study, 2013.

N. Renier, Z. Wu, D. J. Simon, J. Yang, P. Ariel et al., iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging, Cell, vol.159, pp.896-910, 2014.

E. Roux, P. Tortoli, and H. Liebgott, 2-D Ultrasound Sparse Arrays Multidepth Radiation Optimization Using Simulated Annealing and Spiral-Array Inspired Energy Functions 63, p.12, 2016.

M. Scherrer-crosbie, W. Steudel, P. R. Hunziker, N. Liel-cohen, R. Ullrich et al., Three-Dimensional Echocardiographic Assessment of Left Ventricular Wall Motion Abnormalities in Mouse Myocardial Infarction, J. Am. Soc. Echocardiogr, vol.12, pp.70188-70192, 1999.

D. Schlosshan, G. Aggarwal, G. Mathur, R. Allan, and G. Cranney, , p.3, 2011.

, Transesophageal Echocardiography for the Evaluation of Rheumatic Mitral Stenosis. Cardiovasc. IMAGING, vol.4, p.9

C. Sciallero and A. Trucco, Design of a sparse planar array for optimized 3D medical ultrasound imaging, European Signal Processing Conference (EUSIPCO). Presented at the 2015 23rd European Signal Processing Conference (EUSIPCO), pp.1341-1345, 2015.

,

S. W. Smith and H. G. Pavy, High-speed Ultrasound Volumetric Imaging System-Part I: Transducer Design and Beam Steering 9, 1991.

M. Tanter, M. Pernot, J. Aubry, G. Montaldo, F. Marquet et al., Compensating for bone interfaces and respiratory motion in high-intensity focused ultrasound, Int. J. Hyperthermia, vol.23, pp.141-151, 2007.
URL : https://hal.archives-ouvertes.fr/inserm-00158864

,

D. H. Turnbull and F. S. Foster, Beam steering with pulsed two-dimensional transducer arrays, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.38, pp.320-333, 1991.

. Weber, . Schmitt, . Tylkowski, and . Steck, Optimization of random sparse 2-D transducer arrays for 3-D electronic beam steering and focusing, Proceedings of IEEE Ultrasonics Symposium ULTSYM-94. Presented at the Proceedings of IEEE Ultrasonics Symposium ULTSYM-94, vol.3, pp.1503-1506, 1994.

H. Werner, P. Castro, T. Matos, A. , P. Lopes et al., 3D printing in fetal medicine, Abstr. 29th World Congr. Ultrasound Obstet. Gynecol, vol.54, p.1, 2019.

H. Werner, A. Matos, P. Castro, P. , T. Daltro et al., Conjoined twins: how 3D printing can help, Abstr, p.29, 2019.

, World Congr. Ultrasound Obstet. Gynecol, vol.54, p.1, 2019.

I. O. Wygant, N. S. Jamal, H. J. Lee, A. Nikoozadeh, O. Oralkan et al., An integrated circuit with transmit beamforming flip-chip bonded to a 2-D CMUT array for 3-D ultrasound imaging, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.56, pp.2145-2156, 2009.

,

B. Xiong, A. Li, Y. Lou, S. Chen, B. Long et al., Precise Cerebral Vascular Atlas in Stereotaxic Coordinates of Whole Mouse Brain, Front. Neuroanat, vol.11, 2017.

S. B. Zekry, Lateral orbitofrontal artery Mcer: middle cerebral artery Pcer: posterior cerebral artery prh: Prepositus hipoglossal nucleus* Pstr: posterior striate artery Rs: retrospinal cortex* Scba: superior cerebellar artery Scop: subcortical penetrating artery Sss: Superior sagittal sinus STT: Spinal Trigeminal tract* Thp: thalamo-perforating artery Trs: transverse sinus trhi: transverse hippocampal artery Figure 92. 500 µm sagittal cuts taken at various planes rendered based on density Aif, Anterior internal frontal artery Azp: Azygos pericallosal artery Azac: Azygos anterior cerebral arter astr: anterior striate artery bas: basilar artery Gcv: vein of Galen ios: inferior olfactory sinus Lscb: lateral superior cerebral artery lhia: longitudinal hippocampal artery Lhiv: longitudinal hippocampal vein Lofr: Lateral orbitofrontal artery Mcer: middle cerebral artery Mid: middle branch of mcer Mif: Medial internal frontal artery Mmd: Median medullary arteries Mofr: Medial orbitofrontal artery Pcer: posterior cerebral artery Pcom: Posterior communicating artery Pif: Posterior internal frontal artery prh: Prepositus hipoglossal nucleus* Pstr: posterior striate artery Rs: retrospinal cortex* Rsa: retrospinal artery Scba: superior cerebellar artery Scop: subcortical penetrating artery Scol: supracollicular arterial network Sfa: Subfornical artery Sss: Superior sagittal sinus STT: Spinal Trigeminal tract* Thp: thalamo-perforating artery Trs: transverse sinus trhi: transverse hippocampal artery, vol.24, 2011.

K. Chung and K. Deisseroth, CLARITY for mapping the nervous system, Nat. Methods, vol.10, pp.508-513, 2013.

K. Chung, J. Wallace, S. Kim, S. Kalyanasundaram, A. S. Andalman et al., Structural and molecular interrogation of intact biological systems, Nature, vol.497, pp.332-337, 2013.

H. Dodt, U. Leischner, A. Schierloh, N. Jährling, C. P. Mauch et al., Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain, Nat. Methods, vol.4, pp.331-336, 2007.

H. Dong, The Allen reference atlas : A digital color brain atlas of the C57Bl/6J male mouse, 2008.

L. Dumas, C. Heitz-marchaland, S. Fouquet, U. Suter, J. Livet et al., Multicolor analysis of oligodendrocyte morphology, interactions, and development with Brainbow: Multicolor Imaging of Myelination, Glia, vol.63, pp.699-717, 2015.

C. Errico, J. Pierre, S. Pezet, Y. Desailly, Z. Lenkei et al., Ultrafast ultrasound localization microscopy for deep super-resolution vascular imaging, Nature, vol.527, pp.499-502, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02007890

A. Ertürk, K. Becker, N. Jährling, C. P. Mauch, C. D. Hojer et al., Three-dimensional imaging of solventcleared organs using 3DISCO, Nat. Protoc, vol.7, 1983.

,

A. Ertürk and F. Bradke, High-resolution imaging of entire organs by 3-dimensional imaging of solvent cleared organs (3DISCO), Exp. Neurol, vol.242, pp.57-64, 2013.

A. Ertürk, D. Lafkas, and C. Chalouni, Imaging Cleared Intact Biological Systems at a Cellular Level by 3DISCO, J. Vis. Exp, vol.51382, 2014.

K. B. Franklin and G. Paxinos, Paxinos and Franklin's : The mouse brain in stereotaxic coordinates, 2013.

L. Garey, Cortex: Statistics and Geometry of Neuronal Connectivity, 2nd edn. By V. BRAITENBERG and A. SCHUZ. (Pp. xiii+249; 90 figures, J. Anat, vol.194, pp.153-157, 1998.

H. Girouard and C. Iadecola, Neurovascular coupling in the normal brain and in hypertension, stroke, and Alzheimer disease, J. Appl. Physiol, vol.100, pp.328-335, 2006.

H. Gong, S. Zeng, C. Yan, X. Lv, Z. Yang et al., Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution, NeuroImage, vol.74, pp.87-98, 2013.

,

H. Hama, H. Kurokawa, H. Kawano, R. Ando, T. Shimogori et al., Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain, Nat. Neurosci, vol.14, pp.1481-1488, 2011.

N. B. Hamilton, Pericyte-mediated regulation of capillary diameter: a component of neurovascular coupling in health and disease, Front. Neuroenergetics, vol.2, 2010.

V. Hingot, C. Errico, M. Tanter, and O. Couture, Subwavelength motion-correction for ultrafast Ultrasound Localization Microscopy, IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol.1, issue.1, 2017.

J. Huang, Z. Zeng, and H. , Genetic Approaches to Neural Circuits in the Mouse, Annu. Rev. Neurosci, vol.36, pp.183-215, 2013.

M. Kanbay, L. Sanchez-lozada, M. Franco, M. Madero, Y. Solak et al., Microvascular disease and its role in the brain and cardiovascular system: a potential role for uric acid as a cardiorenal toxin, Nephrol. Dial. Transplant, vol.26, pp.430-437, 2011.

,

M. Ke, S. Fujimoto, and T. Imai, SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction, Nat. Neurosci, vol.16, pp.1154-1161, 2013.

T. Kuwajima, A. A. Sitko, P. Bhansali, C. Jurgens, W. Guido et al., ClearT: a detergent-and solvent-free clearing method for neuronal and nonneuronal tissue, Development, vol.140, pp.1364-1368, 2013.

,

A. Li, H. Gong, B. Zhang, Q. Wang, C. Yan et al., Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain, Science, vol.330, pp.1404-1408, 2010.

J. Livet, T. A. Weissman, H. Kang, R. W. Draft, J. Lu et al., Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system, Nature, vol.450, pp.56-62, 2007.

L. Luo, E. M. Callaway, and K. Svoboda, Genetic Dissection of Neural Circuits, Neuron, vol.57, pp.634-660, 2008.

E. Macé, I. Cohen, J. Gennisson, R. Miles, M. Tanter et al., Ultrasound transient elastography of the brain : an in vivo feasability study in small animals, Presented at the International Conference on the ultrasonic measurement and imaging of Tissue Elasticity, 2009.

E. Macé, G. Montaldo, I. Cohen, M. Baulac, M. Fink et al., Functional ultrasound imaging of the brain, Nat. Methods, vol.8, pp.662-664, 2011.

,

E. Macé, G. Montaldo, M. Fink, M. Tanter, I. Cohen et al., High sensitivity brain angiography using ultrafast Doppler. Presented at the International Ultrasonics Symposium, 2010.

L. Madisen, T. A. Zwingman, S. M. Sunkin, S. W. Oh, H. A. Zariwala et al., A robust and high-throughput Cre reporting and characterization system for the whole mouse brain, Nat. Neurosci, vol.13, pp.133-140, 2010.

T. A. Manolio, J. Olson, and W. T. Longstreth, Hypertension and cognitive function: Pathophysiologic effects of hypertension on the brain, Curr. Hypertens. Rep, vol.5, pp.255-261, 2003.

H. Markram, M. Toledo-rodriguez, Y. Wang, A. Gupta, G. Silberberg et al., Interneurons of the neocortical inhibitory system, Nat. Rev. Neurosci, vol.5, pp.793-807, 2004.

D. Mayerich, L. Abbott, and B. Mccormick, Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain, J. Microsc, vol.231, pp.134-143, 2008.

B. H. Mccormick, W. Koh, Y. Choe, L. C. Abbott, J. Keyser et al., Construction of anatomically correct models of mouse brain networks, Neurocomputing, vol.58, pp.379-386, 2004.

,

K. Miyamichi, F. Amat, F. Moussavi, C. Wang, I. Wickersham et al., Cortical representations of olfactory input by trans-synaptic tracing, Nature, vol.472, pp.191-196, 2011.

L. Orozco-cabal, S. Pollandt, J. Liu, P. Shinnick-gallagher, and J. P. Gallagher, Regulation of Synaptic Transmission by CRF Receptors, Rev. Neurosci, vol.17, 2006.

E. A. Papp, T. B. Leergaard, E. Calabrese, G. A. Johnson, and J. G. Bjaalie, Waxholm Space atlas of the Sprague Dawley rat brain, NeuroImage, vol.97, pp.374-386, 2014.

M. Peyrounette, Y. Davit, M. Quintard, and S. Lorthois, Multiscale modelling of blood flow in cerebral microcirculation: Details at capillary scale control accuracy at the level of the cortex, PLOS ONE, vol.13, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02391946

T. Ragan, L. R. Kadiri, K. U. Venkataraju, K. Bahlmann, J. Sutin et al., Serial two-photon tomography for automated ex vivo mouse brain imaging, Nat. Methods, vol.9, pp.255-258, 2012.

T. Ragan, J. D. Sylvan, K. H. Kim, H. Huang, K. Bahlmann et al., High-resolution whole organ imaging using two-photon tissue cytometry, J. Biomed. Opt, vol.12, p.14015, 2007.

N. Renier, Z. Wu, D. J. Simon, J. Yang, P. Ariel et al., iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging, Cell, vol.159, pp.896-910, 2014.

O. U. Scremin, Cerebral Vascular System, vol.36

N. C. Shaner, P. A. Steinbach, and R. Y. Tsien, A guide to choosing fluorescent proteins, Nat. Methods, vol.2, pp.905-909, 2005.

S. Shi, Y. Shi, and C. R. Taylor, Antigen Retrieval Immunohistochemistry: Review and Future Prospects in Research and Diagnosis over, vol.20, 2011.

C. Sotelo, Viewing the brain through the master hand of Ramon y Cajal, Nat. Rev. Neurosci, vol.4, pp.71-77, 2003.

E. A. Susaki, K. Tainaka, D. Perrin, F. Kishino, T. Tawara et al., Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis, Cell, vol.157, pp.726-739, 2014.

R. Tomer, L. Ye, B. Hsueh, and K. Deisseroth, Advanced CLARITY for rapid and high-resolution imaging of intact tissues, Nat. Protoc, vol.9, pp.1682-1697, 2014.

U. Windhorst and H. Johansson, Modern Techniques in Neuroscience Research, 1999.

J. Wu, Y. He, Z. Yang, C. Guo, Q. Luo et al., 3D BrainCV: Simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution, NeuroImage, vol.87, pp.199-208, 2014.

B. Xiong, A. Li, Y. Lou, S. Chen, B. Long et al., Precise Cerebral Vascular Atlas in Stereotaxic Coordinates of Whole Mouse Brain, Front. Neuroanat, vol.11, 2017.

B. Yang, J. B. Treweek, R. P. Kulkarni, B. E. Deverman, C. Chen et al., Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing, Cell, vol.158, pp.945-958, 2014.

J. Yuan, H. Gong, A. Li, X. Li, S. Chen et al., Visible rodent brainwide networks at single-neuron resolution, Front. Neuroanat, vol.9, 2015.

B. Zhang, A. Li, Z. Yang, J. Wu, Q. Luo et al., Modified Golgi-Cox method for micrometer scale sectioning of the whole mouse brain, J. Neurosci. Methods, vol.197, pp.1-5, 2011.

A. Bar-zion, C. Tremblay-darveau, O. Solomon, D. Adam, and Y. C. Eldar, Fast Vascular Ultrasound Imaging With Enhanced Spatial Resolution and Background Rejection, IEEE Transactions on Medical Imaging, vol.36, pp.169-180, 2017.

C. Errico, J. Pierre, S. Pezet, Y. Desailly, Z. Lenkei et al., Ultrafast ultrasound localization microscopy for deep super-resolution vascular imaging, Nature, vol.527, pp.499-502, 2015.
URL : https://hal.archives-ouvertes.fr/hal-02007890

T. Holscher, J. Sattin, R. Raman, W. Wilkening, C. V. Fanale et al., Real-time Cerebral Angiography : Sensitivity of a New Contrast-Specific Ultrasound Technique, American Journal of Neuroradiology, 2007.

T. Ilovitsh, A. Ilovitsh, J. Foiret, B. Z. Fite, and K. W. Ferrara, Acoustical structured illumination for super-resolution ultrasound imaging, Communications Biology, vol.1, 2018.

J. A. Jensen, H. Holten-lund, R. T. Nilsson, M. Hansen, U. D. Larsen et al., SARUS: A synthetic aperture real-time ultrasound system, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol.60, pp.1838-1852, 2013.

K. Kawabata, N. Sugita, H. Yoshikawa, T. Azuma, and S. Umemura, Nanoparticles with Multiple Perfluorocarbons for Controllable Ultrasonically Induced Phase Shifting, Japanese Journal of Applied Physics, vol.44, pp.4548-4552, 2005.

,

E. Macé, I. Cohen, J. Gennisson, R. Miles, M. Tanter et al., Ultrasound transient elastography of the brain : an in vivo feasability study in small animals, Presented at the International Conference on the ultrasonic measurement and imaging of Tissue Elasticity, 2009.

E. Macé, G. Montaldo, I. Cohen, M. Baulac, M. Fink et al., Functional ultrasound imaging of the brain, Nat Methods, vol.8, pp.662-664, 2011.

,

E. Macé, G. Montaldo, M. Fink, M. Tanter, I. Cohen et al., High sensitivity brain angiography using ultrafast Doppler. Presented at the International Ultrasonics Symposium, 2010.

J. Provost, C. Papadacci, J. E. Arango, M. Imbault, M. Fink et al., 3D ultrafast ultrasound imaging in vivo, Physics in Medicine and Biology, vol.59, pp.1-13, 2014.

S. Sheeran, P. , A. Dayton, and P. , Phase-Change Contrast Agents for Imaging and Therapy, Current Pharmaceutical Design, vol.18, pp.2152-2165, 2012.

,

O. Solomon, R. J. Van-sloun, H. Wijkstra, M. Mischi, and Y. C. Eldar, Exploiting flow dynamics for super-resolution in contrast-enhanced ultrasound, 2018.

J. O. Szablowski, A. Lee-gosselin, B. Lue, D. Malounda, and M. G. Shapiro, Acoustically targeted chemogenetics for the non-invasive control of neural circuits, Nature Biomedical Engineering, vol.2, pp.475-484, 2018.

S. Vilov, B. Arnal, and E. Bossy, Overcoming the acoustic diffraction limit in photoacoustic imaging by the localization of flowing absorbers, Optics Letters, vol.42, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01634471

D. Wu, D. Baresch, C. Cook, D. Malounda, D. Maresca et al., Genetically encoded nanostructures enable acoustic manipulation of engineered cells, 2019.

G. Zhang, S. Harput, S. Lin, K. Christensen-jeffries, C. H. Leow et al., Acoustic wave sparsely activated localization microscopy (AWSALM): Super-resolution ultrasound imaging using acoustic activation and deactivation of nanodroplets, Applied Physics Letters, vol.113, p.14101, 2018.

O. Couture, V. Hingot, B. Heiles, P. Muleki-seya, and M. Tanter, Ultrasound Localization Microscopy and Super-Resolution: A State of the Art, List of publications Publications in peer-reviewed journal, vol.65, pp.1304-1320, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02344318

-. Hingot, C. Errico, B. Heiles, L. Rahal, M. Tanter et al., Microvascular flow dictates the compromise between spatial resolution and acquisition time in

, Ultrasound Localization Microscopy, Scientific Reports, vol.9, 2019.

-. Heiles, M. Correia, V. Hingot, M. Pernot, J. Provost et al., Ultrafast 3D Ultrasound Localization Microscopy using a 32×32 Matrix Array, IEEE Transactions on Medical Imaging, pp.1-1, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02344374

V. Hingot, C. Brodin, B. Heiles, A. Chagnot, M. Yetim et al., Preclinical evidences that early ultrafast ultrasound imaging can be used to predict ischemic stroke outcome and response to treatment

-. Heiles, V. Hingot, L. Rahal, P. Lopez, C. Rabut et al., Volumetric ultrafast Ultrasound Localisation Microscopy in vivo reveals microvascular

-. Heiles, A. Chavignon, V. Hingot, and O. Couture, Single particle localization algorithms for ultrasound localization microscopy in silico and in vivo

-. Heiles, A. Chavignon, A. Bergel, V. Hingot, M. Tanter et al., Whole rat brain microvascular imaging in vivo with volumetric Ultrasound localization Microscopy

-. J. Robin, C. Demené, B. Heiles, L. Puke, F. Perren-landis et al., Awards -Visualizing Physical Acoustics Research Picture Prizes: 3 rd place, Volumetric ultrafast Ultrasound Localization Microscopy in vivo, B. Heiles, 2019.

A. Lopez, M. Bergel, M. Pernot, O. Tanter, ;. B. Couture--esmi-poster-award et al., Volumetric ultrafast Ultrasound Localization Microscopy in vivo, Conclusion and perspectives