Insights into assembly from structural analysis of bacteriophage PRD1, Nature, vol.432, pp.68-74, 2004. ,
Prokaryote viruses studied by electron microscopy, Arch. Virol, vol.157, pp.1843-1849, 2012. ,
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res, vol.25, pp.3389-3402, 1997. ,
Bacteriophage PRD1: a broad host range DSDNA tectivirus with an internal membrane, Adv. Virus Res, vol.45, pp.281-319, 1995. ,
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J. Comput. Biol, vol.19, pp.455-77, 2012. ,
Changes in sour rotten grape berry microbiota during ripening and wine fermentation, Int. J. Food Microbiol, vol.154, pp.152-61, 2012. ,
Lonvaud-Funel, A. Role of botrytized grape micro-organisms in SO 2 binding phenomena, J. Appl. Microbiol, vol.90, pp.34-42, 2001. ,
Acetic acid bacteria spoilage of bottled red wine -a review, Int. J. Food Microbiol, vol.125, pp.60-70, 2008. ,
DNA polymerase from temperate phage Bam35 is endowed with processive polymerization and abasic sites translesion synthesis capacity, Proc. Natl. Acad. Sci. USA, vol.112, pp.3476-3484, 2015. ,
Bam35 tectivirus intraviral interaction map unveils new function and localization of phage ORFan proteins, J. Virol, vol.26, pp.870-887, 2017. ,
Bacteriophages as antimicrobial agents against bacterial contaminants in yeast fermentation processes, Biotechnol. Biofuels, vol.7, p.123, 2014. ,
Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine, PLoS ONE, vol.7, p.36357, 2012. ,
Gut homeostasis in a microbial world: insights from Drosophila melanogaster, Nat. Rev. Microbiol, issue.11, pp.615-626, 2013. ,
Lipid-containing viruses: bacteriophage PRD1 assembly, Adv. Exp. Med. Biol, vol.726, pp.365-377, 2012. ,
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses, Bioinformatics, vol.25, pp.1972-1973, 2009. ,
Control of Pierce's Disease by Phage, PLoS ONE, vol.10, p.128902, 2015. ,
The cocoa bean fermentation process: from ecosystem analysis to starter culture development, J. Appl. Microbiol, vol.121, pp.5-17, 2016. ,
Metabolite exchange between microbiome members produces compounds that influence Drosophila behavior, vol.9, p.6, 2017. ,
Bacteriophage GIL01 gp7 interacts with host LexA repressor to enhance DNA binding and inhibit RecA-mediated auto-cleavage, Nucleic Acids Res, vol.43, pp.7315-7344, 2015. ,
The linear double-stranded DNA of phage Bam35 enters lysogenic host cells, but the late phage functions are suppressed, Bacteriol, vol.187, pp.3521-3527, 2005. ,
The entry mechanism of membrane-containing phage Bam35 infecting Bacillus thuringiensis, J. Bacteriol, vol.188, pp.5925-5934, 2006. ,
Prevalence, genetic diversity, and host range of tectiviruses among members of the Bacillus cereus group, Appl. Environ. Microbiol, vol.80, pp.4138-52, 2014. ,
Influence of lysogeny of Tectiviruses GIL01 and GIL16 on Bacillus thuringiensis growth, biofilm formation, and swarming motility, Appl. Environ. Microbiol, vol.80, pp.7620-7630, 2014. ,
ICTV taxonomic proposal 2017. 013B.U.v1. In the family Tectiviridae, change the name of genus Tectivirus to Alphatectivirus and create a new genus, Betatectivirus. International Committee on Taxonomy in Viruses (ICTV, p.20, 2017. ,
Gascuel; O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0, Syst. Biol, vol.59, pp.307-321, 2010. ,
CD-Search: protein domain annotations on the fly, Nucleic Acids Res, vol.32, pp.327-331, 2004. ,
Genome-based Phylogeny and Classification of Prokaryotic Viruses, Bioinformatics, 2017. ,
Acetic acid bacteria in grape must, pp.419-442, 2013. ,
, ICTV Report Consortium. ICTV Virus Taxonomy Profile: Corticoviridae. J.Gen. Virol, vol.98, pp.888-889, 2017.
Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel family Sphaerolipoviridae, Arch. Virol, vol.159, pp.1541-54, 2014. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01977401
PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and threedimensional structural information, Methods Mol. Biol, vol.1079, pp.263-271, 2014. ,
Mechanism of membranous tunnelling nanotube formation in viral genome delivery, PLoS Biol, p.11, 2013. ,
A survey of oenophages during wine making reveals a novel group with unusual genomic characteristics, Int. J. Food Microbiol, vol.257, pp.138-147, 2017. ,
Wine fermentation microbiome: a landscape from different Portuguese wine appellations, Front. Microbiol, vol.6, p.905, 2015. ,
Analysis of microbial diversity and dynamics during wine fermentation of Grenache grape variety by high-throughput barcoding sequencing, LWT Food Sc. and Technol, vol.72, pp.317-321, 2016. ,
Acetic Acid Bacteria in Fermented Food and Beverage Ecosystems, In Acetic Acid Bacteria: Ecology and Physiology. Matsushita, K, pp.73-99, 2016. ,
Biotechnological applications of acetic acid bacteria, Crit. Rev. Biotechnol, vol.28, pp.101-125, 2008. ,
Comparative analysis of bacterial viruses Bam35, infecting a gram-positive host, and PRD1, infecting gram-negative hosts, demonstrates a viral lineage, Virology, vol.313, pp.401-414, 2003. ,
Functional eukaryotic nuclear localization signals are widespread in terminal proteins of bacteriophages, Proc. Natl. Acad. Sci. USA, vol.109, pp.18482-18487, 2012. ,
Multiple roles of genome-attached bacteriophage terminal proteins, Virology, vol.468, pp.322-329, 2014. ,
The lytic enzyme of bacteriophage PRD1 is associated with the viral membrane, J. Bacteriol, vol.184, pp.104-114, 2002. ,
Isolation and characterization of two phages for Gluconobacter oxydans, J. Gen. Microbiol, vol.131, pp.2467-2473, 1985. ,
Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster, Appl. Environ. Microbiol, vol.74, pp.6171-6177, 2008. ,
Draft genome sequences of Gluconobacter cerinus CECT 9110 and Gluconobacter japonicus CECT 8443, acetic acid bacteria Isolated from grape must, Genome Announc, vol.4, pp.621-637, 2016. ,
Molecular Cloning: A Laboratory Manual, 2001. ,
A snapshot of viral evolution from genome analysis of the tectiviridae family, J. Mol. Biol, vol.350, pp.427-440, 2005. ,
Acetobacter bacteriophage A-1, Archiv. Microbiol, vol.121, pp.193-197, 1979. ,
Prokka: Rapid Prokaryotic Genome Annotation, Bioinformatics, vol.30, pp.2068-2069, 2014. ,
The HHpred interactive server for protein homology detection and structure prediction, Nucleic Acids Res, pp.244-248, 2005. ,
The occurrence of bacteriophages in spirit vinegar fermentation, Appl. Microbiol. Biotechnol, vol.30, pp.41-46, 1989. ,
Easyfig: a genome comparison visualizer, Bioinformatics, vol.27, pp.1009-1010, 2011. ,
The K5 lyase KflA combines a viral tail spike structure with a bacterial polysaccharide lyase mechanism, J. Biol. Chem, vol.285, pp.23963-23969, 2010. ,
Influence of levan-producing acetic acid bacteria on buckwheat-sourdough breads, Food Microbiol, vol.65, pp.95-104, 2017. ,
Effect of chitosan and SO 2 on viability of Acetobacter strains in wine, Int. J. Food Microbiol, vol.246, pp.1-4, 2017. ,
Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies, PLoS ONE, vol.4, p.7401, 2009. ,
Reduction of invasive bacteria in ethanol fermentations using bacteriophages, Biotechnol. Bioeng, vol.112, pp.1544-53, 2015. ,
Characterization of Streptococcus thermophilus lytic bacteriophages from mozzarella cheese plants, Int. J. Food Microbiol, vol.138, pp.137-181, 2010. ,
Phage therapy of pulmonary infections, vol.5, p.1020260, 2015. ,
The first phage electron micrographs, Bacteriophage, vol.1, pp.225-227, 2011. ,
, , 1959.
How to name and classify your phage: An Informal Guide, Viruses, vol.9, 2017. ,
Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee, Arch. Virol, vol.162, pp.1153-1157, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01557689
Biological activity of resveratrol, a stilbenic compound from grapevines, against Botrytis cinerea, the causal agent for gray mold, J. Chem. Ecol, vol.23, pp.1689-1702, 1997. ,
Differences in lactococcal cell wall polysaccharide structure are major determining factors in bacteriophage sensitivity, vol.5, pp.880-00814, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01204398
Temperate Streptococcus thermophilus phages expressing superinfection exclusion proteins of the Ltp type, Front. Microbiol, vol.5, p.98, 2014. ,
Bacteriophage-based bacterial wilt biocontrol for an environmentally sustainable agriculture, Front. Plant Sci, vol.8, 1218. ,
Isolation and characterization of Leuconostoc oenos phages from German wines, Appl. Microbiol. Biotechnol, vol.37, pp.643-646, 1992. ,
Characterization of phage isolates from a phagecarrying culture of Leuconostoc oenos 58N, Appl. Microbiol. Biotechnol, vol.34, pp.220-224, 1990. ,
, Lysogeny in Leuconostoc oenos. Microbiology, vol.137, pp.2135-2139, 1991.
The impact of moderate wine consumption on health, Maturitas, vol.80, pp.3-13, 2015. ,
, , 2015.
Oenococcus alcoholitolerans sp. nov., a lactic acid bacteria isolated from cachaça and ethanol fermentation processes, Antonie Van Leeuwenhoek, vol.106, pp.1259-1267, 2014. ,
Report on a pseudolysogenic mycobacterium and a review of the literature concerning pseudolysogeny, Acta Pathol. Microbiol. Scand. [B] Microbiol. Immunol, vol.79, pp.428-434, 1971. ,
Biocontrol and rapid detection of food-borne pathogens using bacteriophages and endolysins, Front. Microbiol, vol.7, p.474, 2016. ,
Ecology of the oral microbiome: beyond bacteria, Trends Microbiol, vol.25, pp.362-374, 2017. ,
Phage therapy for plant disease control, Curr. Pharm. Biotechnol, vol.11, pp.48-57, 2010. ,
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J. Comput. Biol. J. Comput. Mol. Cell Biol, vol.19, pp.455-477, 2012. ,
Phage SPP1 reversible adsorption to Bacillus subtilis cell wall teichoic acids accelerates virus recognition of membrane receptor YueB, J. Bacteriol, vol.190, pp.4989-4996, 2008. ,
Oenococcus oeni and the genomic era, FEMS Microbiol. Rev, vol.41, pp.84-94, 2017. ,
Malolactic fermentation and wine flavour, Aust. Grapegrow. Winemak. Aust, 1995. ,
Interactions micro-organismes -bois et impact sur les propriétés physicochimiques du vin : fermentation malolactique par le biofilm de Oenococcus oeni, 2015. ,
Effect of biofilm formation by Oenococcus oeni on malolactic fermentation and the release of aromatic compounds in wine, Front. Microbiol, vol.7, p.613, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01482143
Physiological role and molecular aspects of grapevine stilbenic compounds, Molecular Biology & Biotechnology of the Grapevine, pp.153-182, 2001. ,
Fluoroquinolone induction of phage-mediated gene transfer in multidrug-resistant Salmonella, Int. J. Antimicrob. Agents, vol.46, pp.201-204, 2015. ,
X-ray structure of a superinfection exclusion lipoprotein from phage TP-J34 and identification of the tape measure protein as its target, Mol. Microbiol, vol.89, pp.152-165, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02066313
Revisiting bistability in the lysis/lysogeny circuit of bacteriophage lambda, PloS One, vol.9, 2014. ,
, , 2016.
Host receptors for bacteriophage adsorption, FEMS Microbiol. Lett, vol.363, 2016. ,
Improving Oenococcus oeni to overcome challenges of wine malolactic fermentation, Trends Biotechnol, vol.33, pp.547-553, 2015. ,
Analytical procedures for determination of quercetin and its glycosides in plant material, Crit. Rev. Anal. Chem, vol.39, pp.95-107, 2009. ,
Multilocus sequence typing of Oenococcus oeni: detection of two subpopulations shaped by intergenic recombination, Appl. Environ. Microbiol, vol.75, pp.1291-1300, 2009. ,
Pervasive domestication of defective prophages by bacteria, Proc. Natl. Acad. Sci. U. S. A, vol.111, pp.12127-12132, 2014. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01374961
Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies, J. Comput. Biol. J. Comput. Mol. Cell Biol, vol.17, pp.1519-1533, 2010. ,
Taxonomic characterization of Leuconostoc mesenteroides and Leuconostoc oenos bacteriophage, FEMS Microbiol. Lett, vol.90, pp.211-215, 1992. ,
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate, Proc. Natl. Acad. Sci. U. S. A, vol.111, pp.139-148, 2014. ,
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria, PeerJ, vol.5, p.3243, 2017. ,
, , 2009.
, Oenococcus oeni genome plasticity is associated with fitness, Appl. Environ. Microbiol, vol.75, pp.2079-2090
Prophages mediate defense against phage infection through diverse mechanisms, ISME J, vol.10, pp.2854-2866, 2016. ,
Genotypic diversity in Oenococcus oeni by high-density microarray comparative genome hybridization and whole genome sequencing, Appl. Microbiol. Biotechnol, vol.86, pp.681-691, 2010. ,
Comparative analysis of the Oenococcus oeni pan genome reveals genetic diversity in industrially-relevant pathways, BMC Genomics, vol.13, p.373, 2012. ,
, , 2014.
Host adaption to the bacteriophage carrier state of Campylobacter jejuni, Res. Microbiol, vol.166, pp.504-515, 2015. ,
Here a virus, there a virus, everywhere the same virus?, Trends Microbiol, vol.13, pp.278-284, 2005. ,
Evidence of distinct populations and specific subpopulations within the species Oenococcus oeni, Appl. Environ. Microbiol, vol.76, pp.7754-7764, 2010. ,
Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages, Mol. Microbiol, vol.39, pp.213-222, 2001. ,
Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol, Mol. Biol. Rev. MMBR, vol.68, pp.560-602, 2004. ,
Human volunteers receiving Escherichia coli phage T4 orally: a safety test of phage therapy, Antimicrob. Agents Chemother, vol.49, pp.2874-2878, 2005. ,
Phylogenomic analysis of Oenococcus oeni reveals specific domestication of strains to cider and wines, Genome Biol. Evol, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01202801
Two different Oenococcus oeni lineages are associated to either red or white wines in Burgundy: genomics and metabolomics insights, OENO One, vol.51, p.309, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01666981
Influence of phenolic acids on growth and inactivation of Oenococcus oeni and Lactobacillus hilgardii, J. Appl. Microbiol, vol.94, pp.167-174, 2003. ,
Technological properties of Oenococcus oeni strains isolated from typical southern Italian wines, 2010. ,
, Appl. Microbiol, vol.50, pp.327-334
Molecular and biochemical diversity of Oenococcus oeni strains isolated during spontaneous malolactic fermentation of Malvasia Nera wine, Syst. Appl. Microbiol, vol.33, pp.461-467, 2010. ,
Linking wine lactic acid bacteria diversity with wine aroma and flavour, Int. J. Food Microbiol, vol.243, pp.16-27, 2017. ,
, , 2005.
, Bacteriophage P100 for control of Listeria monocytogenes in foods: genome sequence, bioinformatic analyses, oral toxicity study, and application, Regul. Toxicol. Pharmacol. RTP, vol.43, pp.301-312
Inhibitory effect of sulfur dioxide and other stress compounds in wine on the ATPase activity of Oenococcus oeni, FEMS Microbiol. Lett, vol.211, pp.155-159, 2002. ,
Prophage spontaneous activation promotes DNA release enhancing biofilm formation in Streptococcus pneumoniae, PloS One, vol.5, 2010. ,
Locations and amounts of major structural proteins in bacteriophage lambda, J. Mol. Biol, vol.88, pp.535-545, 1974. ,
Bacteriophage lambda: early pioneer and still relevant, Virology, vol.0, pp.310-330, 2015. ,
Genomic diversity of bacteriophages infecting the fish pathogen Flavobacterium psychrophilum, FEMS Microbiol. Lett, vol.363, 2016. ,
, , 2015.
Investigations on the problem of bacteriophage development in wines, Rev. Suisse Vitic. Arboric. Hortic. Switz, 1982. ,
Expression of a novel P22 ORFan gene reveals the phage carrier state in Salmonella typhimurium, PLoS Genet, vol.9, p.1003269, 2013. ,
Development of giant bacteriophage ?KZ is independent of the host transcription apparatus, J. Virol, vol.88, pp.10501-10510, 2014. ,
Characterization of a novel endolysin LysSA11 and its utility as a potent biocontrol agent against Staphylococcus aureus on food and utensils, Food Microbiol, vol.68, pp.112-120, 2017. ,
Interactions of the cell-wall glycopolymers of lactic acid bacteria with their bacteriophages, Front. Microbiol, vol.5, p.236, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01204383
Cell surface of Lactococcus lactis is covered by a protective polysaccharide pellicle, J. Biol. Chem, vol.285, pp.10464-10471, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01204236
Hypotheses on the effects of enological tannins and total red wine phenolic compounds on Oenococcus oeni, Food Microbiol, vol.52, pp.131-137, 2015. ,
Analysis of six prophages in Lactococcus lactis IL1403: different genetic structure of temperate and virulent phage populations, Nucleic Acids Res, vol.29, pp.644-651, 2001. ,
, , 2016.
, Carbohydrate metabolism in Oenococcus oeni: a genomic insight, BMC Genomics, vol.17, p.984
Development of a multilocus variable number of tandem repeat typing method for Oenococcus oeni, Food Microbiol, vol.30, pp.340-347, 2012. ,
, Phages in nature. Bacteriophage, vol.1, pp.31-45, 2011.
Phage-antibiotic synergy (PAS): beta-lactam and quinolone antibiotics stimulate virulent phage growth, PloS One, vol.2, p.799, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00180524
Remarkable diversity of Salmonella bacteriophages in swine and poultry, FEMS Microbiol. Lett, vol.362, pp.1-7, 2015. ,
Phage-host interactions analysis of newly characterized Oenococcus oeni bacteriophages: Implications for malolactic fermentation in wine, Int. J. Food Microbiol, vol.246, pp.12-19, 2017. ,
Occurrence of biogenic amine-forming lactic acid bacteria in wine and cider, Food Microbiol, vol.27, pp.1078-1085, 2010. ,
The Bacteriophage HK97 gp15 moron element encodes a novel superinfection exclusion protein, J. Bacteriol, vol.194, pp.5012-5019, 2012. ,
Recent advances in understanding the antibacterial properties of flavonoids, Int. J. Antimicrob. Agents, vol.38, pp.99-107, 2011. ,
Aggregation of Staphylococcus aureus following treatment with the antibacterial flavonol galangin, J. Appl. Microbiol, vol.103, pp.1562-1567, 2007. ,
Genomic, proteomic and morphological characterization of two novel broad host lytic bacteriophages ?PD10.3 and ?PD23.1 infecting pectinolytic Pectobacterium spp. and Dickeya spp, PloS One, vol.10, p.119812, 2015. ,
Activity of ethanol-stressed Oenococcus oeni cells: a flow cytometric approach, J. Appl. Microbiol, vol.106, pp.1690-1696, 2009. ,
Control of Pierce's disease by phage, PloS One, vol.10, p.128902, 2015. ,
The role of temperate bacteriophages in bacterial infection, FEMS Microbiol. Lett, vol.363, p.15, 2016. ,
Occurrence and properties of bacteriophages of Leuconostoc oenos in Australian wines, Appl. Environ. Microbiol, vol.50, pp.872-876, 1985. ,
A medium for the cultivation of Lactobacilli, J. Appl. Bacteriol, vol.23, pp.130-135, 1960. ,
Pseudomonas predators: understanding and exploiting phage-host interactions, Nat. Rev. Microbiol, vol.15, pp.517-530, 2017. ,
Bacteriophages can treat and prevent Pseudomonas aeruginosa lung infections, J. Infect. Dis, vol.201, pp.1096-1104, 2010. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01425464
Interactions entre Oenococcus oeni et ses bactériophages au cours de l'élaboration des vins, 2015. ,
The use of genomic signature distance between bacteriophages and their hosts diplays evolutionary relationships and phage growth cycle determination, Virol. J, vol.7, p.163, 2010. ,
Comparative genomics of phages and prophages in lactic acid bacteria, Antonie Van Leeuwenhoek, vol.82, pp.73-91, 2002. ,
Bacteria-phage interactions in natural environments, 2014. ,
Proposal to reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov, Int. J. Syst. Bacteriol, vol.45, pp.395-397, 1995. ,
Exposing the secrets of two well-known Lactobacillus casei phages, J-1 and PL-1, by genomic and structural analysis, Appl. Environ. Microbiol, vol.80, pp.7107-7121, 2014. ,
Evolved distal tail carbohydrate binding modules of Lactobacillus phage J-1: a novel type of anti-receptor widespread among lactic acid bacteria phages, Mol. Microbiol, vol.104, pp.608-620, 2017. ,
Exopolysaccharide (EPS) synthesis by Oenococcus oeni: from genes to phenotypes, PloS One, vol.9, p.98898, 2014. ,
Exopolysaccharides produced by Oenococcus oeni: From genomic and phenotypic analysis to technological valorization, Food Microbiol, vol.53, pp.10-17, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01837761
Development of a new method for detection and identification of Oenococcus oeni bacteriophages based on endolysin gene sequence and randomly amplified polymorphic DNA, Appl. Environ. Microbiol, vol.79, pp.4799-4805, 2013. ,
Cell wall polymers and phage lysis of Lactobacillus plantarum, Biochemistry (Mosc.), vol.10, pp.1551-1555, 1971. ,
Who discovered bacteriophage?, Bacteriol. Rev, vol.40, pp.793-802, 1976. ,
Phage therapy: a realistic weapon against multidrug resistant bacteria, Med. Sci. MS, vol.33, pp.410-416, 2017. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01827321
Treatment of highly virulent extraintestinal pathogenic Escherichia coli pneumonia with bacteriophages, Crit. Care Med, vol.43, pp.190-198, 2015. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01539037
, , 2017.
Bacteriophage and their potential roles in the human oral cavity, J. Oral Microbiol, vol.7, p.27423, 2015. ,
Computational approaches to predict bacteriophage-host relationships, FEMS Microbiol. Rev, vol.40, pp.258-272, 2016. ,
The genome of the Lactobacillus sanfranciscensis temperate phage EV3, BMC Res. Notes, vol.6, p.514, 2013. ,
, , 2017.
, Biogeography of Oenococcus oeni reveals distinctive but nonspecific populations in wine-producing regions, Appl. Environ. Microbiol, vol.83
The growth of bacteriophage, J. Gen. Physiol, vol.22, pp.365-384, 1939. ,
Oenococcus kitaharae sp. nov., a non-acidophilic and non-malolacticfermenting Oenococcus isolated from a composting distilled shochu residue, Int. J. Syst. Evol. Microbiol, vol.56, pp.2345-2348, 2006. ,
Communication between viruses guides lysis-lysogeny decisions, Nature, vol.541, pp.488-493, 2017. ,
Molecular insights on the recognition of a Lactococcus lactis cell wall pellicle by the phage 1358 receptor binding protein, J. Virol, vol.88, pp.7005-7015, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02066309
Induction of the lysogenic phage encoding cholera toxin in naturally occurring strains of toxigenic Vibrio cholerae O1 and O139, Infect. Immun, vol.66, pp.3752-3757, 1998. ,
Etude des plasmides et génomes d'Oenococcus oeni pour l'identification des gènes d'intérêt technologique, 2012. ,
A new perspective on lysogeny: prophages as active regulatory switches of bacteria, Nat. Rev. Microbiol, vol.13, pp.641-650, 2015. ,
Effect of phenolic aldehydes and flavonoids on growth and inactivation of Oenococcus oeni and Lactobacillus hilgardii, Food Microbiol, vol.25, pp.105-112, 2008. ,
Inducible prophages contribute to Salmonella virulence in mice, Mol. Microbiol, vol.33, pp.167-176, 1999. ,
Campylobacters and their bacteriophages from chicken liver: The prospect for phage biocontrol, Int. J. Food Microbiol, vol.237, pp.121-127, 2016. ,
The effect of quercetin on genetic expression of the commensal gut microbes Bifidobacterium catenulatum, Enterococcus caccae and Ruminococcus gauvreauii, Anaerobe, vol.42, pp.130-141, 2016. ,
Genome structure of mycobacteriophage D29: implications for phage evolution, J. Mol. Biol, vol.279, pp.143-164, 1998. ,
Importance of prophages to evolution and virulence of bacterial pathogens, Virulence, vol.4, pp.354-365, 2013. ,
Isolation and characterization of a virulent Lactobacillus sanfranciscensis bacteriophage and its impact on microbial population in sourdough, Curr. Microbiol, vol.51, pp.413-418, 2005. ,
Identification of bacteriophages for biocontrol of the kiwifruit canker phytopathogen Pseudomonas syringae pv. actinidiae, Appl. Environ. Microbiol, vol.80, pp.2216-2228, 2014. ,
, Presence of Oenococcus oeni and other lactic acid bacteria in grapes and wines from Priorat, 2017.
, LWT -Food Sci. Technol, vol.81, pp.326-334
The minimal gene complement of Mycoplasma genitalium, Science, vol.270, pp.397-403, 1995. ,
Fermentation and post-fermentation processing, Wine Microbiology, pp.132-142, 1997. ,
, , 2013.
, Temperate bacterial viruses as double-edged swords in bacterial warfare, PLOS ONE, vol.8, p.59043
, , 2015.
, Autochthonous starter cultures and indigenous grape variety for regional wine production, J. Appl. Microbiol, vol.118, pp.1395-1408
Leuconostoc oenos sp.nov, J. Gen. Microbiol, vol.48, pp.431-438, 1967. ,
Characterization of ionized heterocyclic carbenes by ion-molecule reactions, Rapid Commun. Mass Spectrom. RCM, vol.13, pp.1707-1711, 1999. ,
Antioxidant activity of different phenolic fractions separated from an Italian red wine, J. Agric. Food Chem, vol.46, pp.361-367, 1998. ,
Acylhomoserine lactones can induce virus production in lysogenic bacteria: an alternative paradigm for prophage induction, Appl. Environ. Microbiol, vol.75, pp.7142-7152, 2009. ,
Analysis of free and total sulfur dioxide in wine by using a gasdiffusion analytical system with pH detection, Food Chem, vol.228, pp.518-525, 2017. ,
Identification and sequence analysis of the region encoding the site-specific integration system from Leuconostoc oenos (OEnococcus oeni) temperate bacteriophage ?10MC, FEMS Microbiol. Lett, vol.147, pp.279-285, 1997. ,
Connaissances sur les bacteriophages de Leuconostoc oenos et progres dans la maitrise de la fermentation malolactique des vins, Rev. Suisse Vitic. Arboric. Hortic, 1984. ,
Quercetin influences quorum sensing in food borne bacteria: in-vitro and in-silico evidence, PloS One, vol.10, 2015. ,
Assessing the association between phenolic compounds and the antioxidant activity of Brazilian red wines using chemometrics, LWT -Food Sci. Technol, vol.43, pp.1542-1549, 2010. ,
Prokaryotic virus orthologous groups (pVOGs): a resource for comparative genomics and protein family annotation, Nucleic Acids Res, vol.45, pp.491-498, 2017. ,
Characterization of a Leuconostoc gelidum bacteriophage from pork, Int. J. Food Microbiol, vol.114, pp.370-375, 2007. ,
A survey of glycosidase activities of commercial wine strains of Oenococcus oeni, Int. J. Food Microbiol, vol.105, pp.233-244, 2005. ,
Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae, Virology, vol.468, pp.421-443, 2014. ,
Phenotypic and genotypic characterization of Oenococcus oeni strains isolated from Italian wines, Int. J. Food Microbiol, vol.83, pp.1-14, 2003. ,
Typing of bacteriophages by randomly amplified polymorphic DNA (RAPD)-PCR to assess genetic diversity, FEMS Microbiol. Lett, vol.322, pp.90-97, 2011. ,
Bacteriophages as weapons against bacterial biofilms in the food industry, Front. Microbiol, vol.7, p.825, 2016. ,
The inhibitory effects of wine phenolics on lysozyme activity against lactic acid bacteria, Int. J. Food Microbiol, vol.148, pp.184-190, 2011. ,
Increase of sulfite tolerance in Oenococcus oeni by means of acidic adaptation, FEMS Microbiol. Lett, vol.160, pp.43-47, 1998. ,
Phages of Listeria offer novel tools for diagnostics and biocontrol, Front. Microbiol, vol.5, p.159, 2014. ,
Bacteriophages and their genomes, Curr. Opin. Virol, vol.1, pp.298-303, 2011. ,
Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution, Res. Microbiol, vol.159, pp.332-339, 2008. ,
Comparative genomic analysis of 60, 2010. ,
, Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size, J. Mol. Biol, vol.397, pp.119-143
, , 2017.
Bacteriophages: evolution of the majority. Theor, Popul. Biol, vol.61, pp.471-480, 2002. ,
Jumbo bacteriophages, Curr. Top. Microbiol. Immunol, vol.328, pp.229-240, 2009. ,
The origins and ongoing evolution of viruses, Trends Microbiol, vol.8, pp.504-508, 2000. ,
Inhibition of bacterial growth and malolactic fermentation in wine by bacteriophage, J. Appl. Bacteriol, vol.61, pp.287-293, 1986. ,
Characterization of the lytic activity of bacteriophages of Leuconostoc oenos isolated from wine, J. Appl. Bacteriol, vol.61, pp.525-534, 1986. ,
Bacteriophage cocktail for biocontrol of Salmonella in dried pet food, J. Food Prot, vol.78, pp.97-103, 2015. ,
High-throughput droplet digital PCR system for absolute quantitation of DNA copy number, Anal. Chem, vol.83, pp.8604-8610, 2011. ,
Characterisation of anti-Staphylococcus aureus activity of quercetin, Int. J. Food Sci. Technol, vol.45, pp.1250-1254, 2010. ,
Stability of active prophages in industrial Lactococcus lactis strains in the presence of heat, acid, osmotic, oxidative and antibiotic stressors, Int. J. Food Microbiol, vol.220, pp.26-32, 2016. ,
Diversity of phage infection types and associated terminology: the problem with "Lytic or lysogenic, FEMS Microbiol. Lett, vol.363, 2016. ,
Genetic analysis of tox+ and tox-bacteriophages of Corynebacterium diphtheriae, J. Virol, vol.3, pp.586-598, 1969. ,
Influence of resveratrol on germination of conidia and mycelial growth of Botrytis cinerea and Phomopsis viticola, J. Phytopathol, vol.129, pp.102-110, 1990. ,
The Bacteriophage carrier state of Campylobacter jejuni features changes in host non-coding RNAs and the acquisition of new hostderived CRISPR spacer sequences, Front. Microbiol, vol.7, p.355, 2016. ,
Lysogeny in nature: mechanisms, impact and ecology of temperate phages, ISME J, vol.11, pp.1511-1520, 2017. ,
Characterization of a temperate phage isolated from Leuconostoc oenos strain 1002, Appl. Microbiol. Biotechnol, vol.45, pp.472-476, 1996. ,
Oxidative stress and inflammation: what polyphenols can do for us?, Oxid. Med. Cell. Longev, p.7432797, 2016. ,
Antimicrobial activities of essential oils, Pharm. Weekbl, vol.9, pp.193-197, 1987. ,
Diversité des bactériophages infectant la bactérie lactique Oenococcus oeni, responsable de la fermentation malolactique des vins, 2014. ,
Expanding the diversity of oenococcal bacteriophages: insights into a novel group based on the integrase sequence, Int. J. Food Microbiol, vol.166, pp.331-340, 2013. ,
, , 2016.
Bacteriophage biocontrol in wastewater treatment, World J. Microbiol. Biotechnol, vol.32, p.70, 2016. ,
Phenotypic alterations in the colonial morphology of Brucella abortus due to a bacteriophage carrier state, J. Bacteriol, vol.83, pp.860-866, 1962. ,
Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages, J. Mol. Biol, vol.299, pp.27-51, 2000. ,
, , 2011.
, Metagenomic analysis of kimchi, a traditional Korean fermented food, Appl. Environ. Microbiol, vol.77, pp.2264-2274
Length determination in bacteriophage lambda tails, Cell, vol.39, pp.691-698, 1984. ,
Techniques for analysis of plant phenolic compounds, 2013. ,
Etude de la diversité des souches d'Oenococcus oeni responsables de la fermentation malolactique des vins dans différentes régions vitivinicoles, 2014. ,
Comparison of droplet digital PCR and quantitative realtime PCR for examining population dynamics of bacteria in soil, Appl. Microbiol. Biotechnol, vol.98, pp.6105-6113, 2014. ,
Aquarium viromes: viromes of humanmanaged aquatic systems, Front. Microbiol, vol.8, p.1231, 2017. ,
Metabolic interactions between Saccharomyces cerevisiae and Leuconostoc oenos in a model grape juice/wine system, Am. J. Enol. Vitic, vol.37, pp.53-60, 1986. ,
Quantification of Listeria monocytogenes cells with digital PCR and their biofilm cells with real-time PCR, J. Microbiol. Methods, vol.118, pp.37-41, 2015. ,
Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes, BMC Genomics, vol.16, p.7, 2015. ,
Novel Podoviridae family bacteriophage infecting Weissella cibaria isolated from Kimchi, Appl. Environ. Microbiol, vol.78, pp.7299-7308, 2012. ,
Application of yeast and bacteria as starter cultures, biology of microorganisms on grapes, in must and in wine, pp.605-634, 2017. ,
Position paper: the creation of a rational scheme for the nomenclature of viruses of Bacteria and Archaea, Environ. Microbiol, vol.11, pp.2775-2777, 2009. ,
Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee, Arch. Virol, vol.161, pp.1095-1099, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01557689
A heady concoction of alcoholic and malolactic fermentations, Nat. Biotechnol, vol.15, pp.224-225, 1997. ,
Bacteriophage resistance mechanisms, Nat. Rev. Microbiol, vol.8, pp.317-327, 2010. ,
Q69 (an E. faecalis-infecting bacteriophage) As a biocontrol agent for reducing tyramine in dairy products, Front. Microbiol, vol.7, 2016. ,
The application of malolactic fermentation process to create good-quality grape wine produced in cool-climate countries: a review, Eur. Food Res. Technol, vol.237, pp.843-850, 2013. ,
Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches, J. Bacteriol, vol.184, pp.4891-4905, 2002. ,
Bacteriophages associated with lactobacilli iso-lated from wine, Proceedings of the 5 th International Oenological symposium, pp.287-295, 1978. ,
Phage conversion for ?-Lactam antibiotic resistance of Staphylococcus aureus from foods, J. Microbiol. Biotechnol, vol.26, pp.263-269, 2016. ,
Effect of phenolic compounds, ethyl alcohol, and sodium metabisulphite on the lytic activity of phage PL-1 on a Lactobacillus casei S strain, Can. J. Microbiol, vol.31, pp.873-875, 1985. ,
Isolation and characterization of Listeria phages for control of growth of Listeria monocytogenes in milk, Korean J. Food Sci. Anim. Resour, vol.37, pp.320-328, 2017. ,
Genome engineering of virulent Lactococcal phages using CRISPR-Cas9, ACS Synth. Biol, vol.6, pp.1351-1358, 2017. ,
Phenotypic alterations associated with the bacteriophage carrier state of Shigella dysenteriae, J. Gen. Microbiol, vol.24, pp.355-367, 1961. ,
, , 2015.
, Bacteriophage application restores ethanol fermentation characteristics disrupted by Lactobacillus fermentum, Biotechnol. Biofuels, vol.8, p.132
, , 2017.
, Microbiol. Methods, vol.139, pp.143-149
Dynamic and static light scattering analysis of DNA ejection from the phage lambda, Phys. Rev. E Stat. Nonlin. Soft Matter Phys, vol.76, p.11914, 2007. ,
Effect of phenolic compounds on the growth and L-malic acid metabolism of Oenococcus oeni, J. Life Sci, vol.6, pp.1225-1231, 2012. ,
Lactic acid bacteria in the quality improvement and depreciation of wine, Lactic Acid Bacteria: Genetics, Metabolism and Applications, pp.317-331, 1999. ,
Purification and properties of a malolactic enzyme from a strain of Leuconostoc mesenteroides isolated from grapes, Appl. Environ. Microbiol, vol.43, pp.357-361, 1982. ,
Inhibition of malolactic fermentation of wines by products of yeast metabolism, J. Sci. Food Agric, vol.44, pp.183-191, 1988. ,
Characterization and genome sequencing of two Propionibacterium acnes phages displaying pseudolysogeny, BMC Genomics, vol.12, 0198. ,
, , 2003.
Sequence analysis of Leuconostoc mesenteroides bacteriophage Phi1-A4 isolated from an industrial vegetable fermentation, Appl. Environ. Microbiol, vol.76, pp.1955-1966, 2010. ,
Bacteriophage ecology in a commercial cucumber fermentation, Appl. Environ. Microbiol, vol.78, pp.8571-8578, 2012. ,
Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory, J. Virol, vol.73, pp.8647-8656, 1999. ,
Lysogeny, Bacteriol. Rev, vol.17, pp.269-337, 1953. ,
Transmission of viruses via our microbiomes, vol.4, p.64, 2016. ,
Gram-positive phage-host interactions, Front. Microbiol, vol.6, p.61, 2015. ,
Phage-host interactions of cheesemaking Lactic Acid Bacteria, Annu. Rev. Food Sci. Technol, vol.7, pp.267-285, 2016. ,
Genetic and functional characterisation of the lactococcal P335 phage-host interactions, BMC Genomics, vol.18, p.146, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01802812
A method based on light scattering to estimate the concentration of virus particles without the need for virus particle standards, vol.2, pp.91-99, 2015. ,
Isolation of an inhibitory substance from plants, Agric Res, vol.28, pp.599-602, 1924. ,
Characterization of a bacteriophage for Carnobacterium divergens NCFB 2763 by host specificity and electron microscopy, Lett. Appl. Microbiol, vol.25, pp.401-404, 1997. ,
Top 10 plant pathogenic bacteria in molecular plant pathology, Mol. Plant Pathol, vol.13, pp.614-629, 2012. ,
Role of hypermutability in the evolution of the genus Oenococcus, J. Bacteriol, vol.190, pp.564-570, 2008. ,
, , 2011.
, Genomic diversity of Oenococcus oeni from different winemaking regions of Portugal, Int. Microbiol. Off. J. Span. Soc. Microbiol, vol.14, pp.155-162
Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of mode of packaging and genetic determinants for major structural proteins, Appl. Environ. Microbiol, vol.63, pp.3246-3253, 1997. ,
Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small-and large-subunit rRNA derived trees, J. Appl. Bacteriol, vol.74, pp.532-541, 1993. ,
Grape berry bacterial microbiota: impact of the ripening process and the farming system, Int. J. Food Microbiol, vol.158, pp.93-100, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01631855
Differentiation of polyvalent bacteriophages specific to uropathogenic Proteus mirabilis strains based on the host range pattern and RFLP, Acta Biochim. Pol, vol.63, pp.303-310, 2016. ,
Bacteriophages in dairy products: Pros and cons, Biotechnol. J, vol.2, pp.450-455, 2007. ,
The targeted recognition of Lactococcus lactis phages to their polysaccharide receptors, Mol. Microbiol, vol.96, pp.875-886, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01439002
Identification and Analysis of a Novel Group of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus, Appl. Environ. Microbiol, vol.82, pp.5153-5165, 2016. ,
Sensory Properties of Wine Tannin Fractions: Implications for In-Mouth Sensory Properties, J. Agric. Food Chem, vol.61, pp.719-727, 2013. ,
VICTOR: genome-based phylogeny and classification of prokaryotic viruses, Bioinforma. Oxf. Engl, vol.33, pp.3396-3404, 2017. ,
Bacterial genome remodeling through bacteriophage recombination, FEMS Microbiol. Lett, vol.362, pp.1-10, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01204494
Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies, BMC Genomics, vol.17, p.679, 2016. ,
T4 phage and its head surface proteins do not stimulate inflammatory mediator production, PloS One, vol.8, 2013. ,
The viable but non-culturable state of wine micro-organisms during storage, Lett. Appl. Microbiol, vol.30, pp.136-141, 2000. ,
Genomic analysis of Oenococcus oeni PSU-1 and its relevance to winemaking, FEMS Microbiol. Rev, vol.29, pp.465-475, 2005. ,
Ménage à trois in the human gut: interactions between host, bacteria and phages, Nat. Rev. Microbiol, vol.15, pp.397-408, 2017. ,
Comparison of polyvinylidene fluoride and polyether sulfone membranes in filtering viral suspensions, J. Virol. Methods, vol.109, pp.99-101, 2003. ,
Red wine polyphenols modulate fecal microbiota and reduce markers of the metabolic syndrome in obese patients, Food Funct, vol.7, pp.1775-1787, 2016. ,
The Enzymology of Malo-Lactic Fermentation, Chemistry of Winemaking, pp.171-183, 1974. ,
A high-throughput qPCR system for simultaneous quantitative detection of dairy Lactococcus lactis and Leuconostoc bacteriophages, PloS One, vol.12, 2017. ,
Metagenomic analysis of dairy bacteriophages: extraction method and pilot study on whey samples derived from using undefined and defined mesophilic starter cultures, Appl. Environ. Microbiol, 2017. ,
Phenolic compounds and antioxidant activity of red wine made from grapes treated with different fungicides, Food Chem, vol.180, pp.25-31, 2015. ,
Chapter 8 -Lactic Acid Bacteria, Molecular Wine Microbiology, pp.191-226, 2011. ,
Impact of spontaneous prophage induction on the fitness of bacterial populations and host-microbe interactions, J. Bacteriol, vol.197, pp.410-419, 2015. ,
Nisintriggered activity of Lys44, the secreted endolysin from Oenococcus oeni Phage fOg44, J. Bacteriol, vol.190, pp.457-461, 2008. ,
Isolation and characterization of Leuconostoc oenos bacteriophages from wine and sugarcane, FEMS Microbiol. Lett, vol.44, pp.63-67, 1987. ,
Phage taxonomy: we agree to disagree, J. Bacteriol, vol.186, pp.7029-7031, 2004. ,
Application of laser correlation spectroscopy for measuring virus size, Bull. Exp. Biol. Med, vol.161, pp.88-91, 2016. ,
Bacteriophages of plant pathogens, Annu. Rev. Phytopathol, vol.1, pp.397-418, 2003. ,
Detecting Lactococcus lactis prophages by Mitomycin C-mediated induction coupled to flow cytometry analysis, Front. Microbiol, vol.8, p.1343, 2017. ,
Degradation of free and sulfurdioxide-bound acetaldehyde by malolactic lactic acid bacteria in white wine, J. Appl. Microbiol, vol.101, pp.474-479, 2006. ,
Antimethicillin resistant Staphylococcus aureus (MRSA) compounds isolated from Laurus nobilis, Biol. Pharm. Bull, vol.31, pp.1794-1797, 2008. ,
Metagenomic analysis of the viral communities in fermented foods, Appl. Environ. Microbiol, vol.77, pp.1284-1291, 2011. ,
Gene organization in a central DNA fragment of Oenococcus oeni bacteriophage fOg44 encoding lytic, integrative and non-essential functions, Gene, vol.226, pp.83-93, 1999. ,
Use of products a phage in food industry as a new method for Listeria monocytogenes elimination from food (Listeria monocytogenes phages in food industry) -a Review, Czech J. Food Sci, vol.34, pp.1-8, 2016. ,
Bacteriophage-encoded depolymerases: their diversity and biotechnological applications, Appl. Microbiol. Biotechnol, vol.100, pp.2141-2151, 2016. ,
Lysogeny of Oenococcus oeni (syn. Leuconostoc oenos) and study of their induced bacteriophages, Curr. Microbiol, vol.36, pp.365-369, 1998. ,
Bacterial diversity of Grenache and Carignan grape surface from different vineyards at Priorat wine region (Catalonia, Spain), Int. J. Food Microbiol, vol.219, pp.56-63, 2016. ,
A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus, J. Gen. Virol, vol.98, pp.2181-2189, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01879191
The wonderful world of archaeal viruses, Annu. Rev. Microbiol, vol.67, pp.565-585, 2013. ,
Viruses of the archaea: a unifying view, Nat. Rev. Microbiol, vol.4, pp.837-848, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00107400
Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses, BMC Genomics, vol.7, issue.8, 2006. ,
The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria, J. Bacteriol, vol.184, pp.6026-6036, 2002. ,
Role of mutS and mutL genes in hypermutability and recombination in Staphylococcus aureus, J. Bacteriol, vol.187, pp.3455-3464, 2005. ,
Phages of dairy Leuconostoc mesenteroides: genomics and factors influencing their adsorption, Int. J. Food Microbiol, vol.201, pp.58-65, 2015. ,
, , 2017.
, Leuconostoc mesenteroides and Leuconostoc pseudomesenteroides bacteriophages: Genomics and cross-species host ranges, Int. J. Food Microbiol, vol.257, pp.128-137
Characterization of phage receptors in Streptococcus thermophilus using purified cell walls obtained by a simple protocol, J. Appl. Microbiol, vol.89, pp.1059-1065, 2000. ,
, Bacteriophages. In Recent Advances in Crop Protection, pp.25-36, 2012.
Influence of phenolic compounds on the physiology of Oenococcus oeni from wine, J. Appl. Microbiol, vol.88, pp.1065-1071, 2000. ,
Traité d'oenologie (Dunod), 1998. ,
Crystal structure of the receptor-binding protein head domain from Lactococcus lactis phage bIL170, J. Virol, vol.80, pp.9331-9335, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02066261
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison, Bioinforma. Oxf. Engl, vol.32, pp.929-931, 2016. ,
Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes, PeerJ, vol.4, p.2055, 2016. ,
Medicinal plants and antimicrobial activity, J. Ethnopharmacol, vol.100, pp.80-84, 2005. ,
Food phenolics and lactic acid bacteria, Int. J. Food Microbiol, vol.132, pp.79-90, 2009. ,
The Phage Proteomic Tree: a genome-based taxonomy for phage, J. Bacteriol, vol.184, pp.4529-4535, 2002. ,
Phage-mediated dispersal of biofilm and distribution of bacterial virulence genes is induced by quorum sensing, PLoS Pathog, vol.11, p.1004653, 2015. ,
Effect of phenolic compounds on the co-metabolism of citric acid and sugars by Oenococcus oeni from wine, Lett. Appl. Microbiol, vol.36, pp.337-341, 2003. ,
Quantification of microbial uptake of quercetin and its derivatives using an UHPLC-ESI-QTOF mass spectrometry assay, Food Funct, vol.7, pp.4082-4091, 2016. ,
Growth and energetics of Leuconostoc oenos during cometabolism of glucose with citrate or fructose, Appl. Environ. Microbiol, vol.60, pp.1459-1466, 1994. ,
, Molecular Cloning: A Laboratory Manual, 2001.
Bacteriophages in food fermentations: new frontiers in a continuous arms race, Annu. Rev. Food Sci. Technol, vol.4, pp.347-368, 2013. ,
Nucleotide sequence of bacteriophage phi X174 DNA, Nature, vol.265, pp.687-695, 1977. ,
, , 1996.
The N-terminal region of the Oenococcus oeni bacteriophage fOg44 lysin behaves as a bona fide signal peptide in Escherichia coli and as a cis-inhibitory element, preventing lytic activity on Oenococcal cells, J. Bacteriol, vol.182, pp.5823-5831, 2000. ,
, , 2004.
, Diversity in the lysis-integration region of oenophage genomes and evidence for multiple tRNA loci, as targets for prophage integration in Oenococcus oeni, Virology, vol.325, pp.82-95
Structure of lactococcal phage p2 baseplate and its mechanism of activation, Proc. Natl. Acad. Sci. U. S. A, vol.107, pp.6852-6857, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01595268
Bacteriophage lysin mediates the binding of Streptococcus mitis to human platelets through interaction with fibrinogen, PLOS Pathog, vol.6, p.1001047, 2010. ,
, , 2004.
, Antifungal activity of stilbenes in vitro bioassays and in transgenic Populus expressing a gene encoding pinosylvin synthase, Plant Cell Rep, vol.22, pp.584-593
, , 2014.
, Temperature dependent bacteriophages of a tropical bacterial pathogen, Front. Microbiol, vol.5, p.599
Rapid degradation of Streptococcus pyogenes biofilms by PlyC, a bacteriophage-encoded endolysin, J. Antimicrob. Chemother, vol.68, pp.1818-1824, 2013. ,
Selective inhibition of formation of deoxyribonucleic acid in Escherichia coli by mitomycin C, Nature, vol.183, pp.1056-1057, 1959. ,
Receptor diversity and host interaction of bacteriophages infecting Salmonella enterica serovar Typhimurium, PloS One, vol.7, p.43392, 2012. ,
Consensus statement: Virus taxonomy in the age of metagenomics, Nat. Rev. Microbiol, vol.15, pp.161-168, 2017. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01977366
Heteroduplexes of DNA molecules of lambdoid phages: physical mapping of their base sequence relationships by electron microscopy, Heteroduplexes of DNA Molecules of Lambdoid Phages: Physical Mapping of Their Base Sequence Relationships by Electron Microscopy ,
Tetranucleotide usage in mycobacteriophage genomes: alignment-free methods to cluster phage and infer evolutionary relationships, BMC Bioinformatics, vol.16, p.7, 2015. ,
Alternative bacteriophage life cycles: the carrier state of Campylobacter jejuni, Open Biol, vol.4, p.130200, 2014. ,
Phage cluster relationships identified through single gene analysis, BMC Genomics, vol.14, p.410, 2013. ,
Mise en évidence de bactériophages dans le vin observation of bacteriophages in wine, Experientia, vol.32, pp.568-569, 1976. ,
Difficultés de fermentation malolactique du vin dues à des bactériophages de Leuconostoc oenos, Rev Suisse Vitic Arbor Hort, vol.14, pp.17-23, 1982. ,
Environmental stress response in wine Lactic Acid Bacteria: beyond Bacillus subtilis, Crit. Rev. Microbiol, vol.32, pp.77-86, 2006. ,
Structures and host-adhesion mechanisms of lactococcal siphophages, Front. Microbiol, vol.5, p.3, 2014. ,
Efficacy of potential phage cocktails against Vibrio harveyi and closely related Vibrio species isolated from shrimp aquaculture environment in the south east coast of India, Vet. Microbiol, vol.207, pp.83-96, 2017. ,
Examining the gut bacteriome, virome, and mycobiome in glucose metabolism disorders: Are we on the right track?, Metabolism, vol.73, pp.52-66, 2017. ,
The phage-host arms race: Shaping the evolution of microbes, BioEssays, vol.33, pp.43-51, 2011. ,
Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni, BMC Genomics, vol.17, p.308, 2016. ,
Characterization, antibacterial and biological activities of phenolic fraction of Argentinean red wines, Open Conf. Proc. J, vol.5, 2014. ,
Plant disease: a threat to global food security, Annu. Rev. Phytopathol, vol.43, pp.83-116, 2005. ,
Portal protein diversity and phage ecology, Environ. Microbiol, vol.10, pp.2810-2823, 2008. ,
Application and validation of autochthonous Lactobacillus plantarum starter cultures for controlled malolactic fermentation and its influence on the aromatic profile of cherry wines, Food Microbiol, vol.55, pp.16-24, 2016. ,
Novel variants of Streptococcus thermophilus bacteriophages are indicative of genetic recombination among phages from different bacterial species, Appl. Environ. Microbiol, vol.83, pp.2748-2764, 2017. ,
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences, BMC Bioinformatics, vol.5, p.163, 2004. ,
Bacteriophages induced by mitomycin C treatment of Leuconostoc oenos strains from Portuguese wines, Lett. Appl. Microbiol, vol.16, pp.207-209, 1993. ,
Mise en évidence des polysaccharides sur coupes fines en microscopie électronique, J. Microscopie, vol.6, pp.987-1018, 1967. ,
Lactobacillus: the next generation of malolactic fermentation starter cultures-an overview, Food Bioprocess Technol, vol.4, pp.876-906, 2011. ,
Phage biocontrol of enteropathogenic and Shiga toxin-producing Escherichia coli during milk fermentation, Lett. Appl. Microbiol, vol.57, pp.3-10, 2013. ,
Long-term effects of single and combined introductions of antibiotics and bacteriophages on populations of Pseudomonas aeruginosa, Evol. Appl, vol.9, pp.583-595, 2016. ,
Selection criteria and tools for malolactic starters development: an update, Ann. Microbiol, vol.61, pp.33-39, 2011. ,
Acid sensitivity of neomycin-resistant mutants of Oenococcus oeni: a relationship between reduction of ATPase activity and lack of malolactic activity, FEMS Microbiol. Lett, vol.178, pp.319-326, 1999. ,
Receptor-binding protein of Lactococcus lactis phages: identification and characterization of the saccharide receptor-binding site, J. Bacteriol, vol.188, pp.2400-2410, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02066247
A membrane protein is required for bacteriophage c2 infection of Lactococcus lactis subsp. lactis C2, J. Bacteriol, vol.173, pp.6095-6100, 1991. ,
Bacterial toxin-antitoxin systems: more than selfish entities?, PLoS Genet, vol.5, pp.1000437-1000437, 2009. ,
A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries. Microbiol, Mol. Biol. Rev. MMBR, vol.75, pp.423-433, 2011. ,
Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism, Proc. Natl. Acad. Sci. U. S. A, vol.109, pp.8954-8958, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02066321
Simple and rapid method for cis-and trans-resveratrol and piceid isomers determination in wine by high-performance liquid chromatography using Chromolith columns, J. Chromatogr. A, vol.1085, pp.224-229, 2005. ,
Quercetin protects Saccharomyces cerevisiae against oxidative stress by inducing trehalose biosynthesis and the cell wall integrity pathway, PloS One, vol.7, p.45494, 2012. ,
HostPhinder: A phage host prediction tool, Viruses, vol.8, 2016. ,
Effect of phenolic acids and anthocyanins on growth, viability and malolactic activity of a lactic acid bacterium, Food Microbiol, vol.14, pp.291-299, 1997. ,
Whey powders are a rich source and excellent storage matrix for dairy bacteriophages, Int. J. Food Microbiol, pp.308-317, 2017. ,
Cryptic prophages help bacteria cope with adverse environments, Nat. Commun, vol.1, p.147, 2010. ,
Predation in the presence of decoys: an inhibitory factor on pathogen control by bacteriophages or bdellovibrios in dense and diverse ecosystems, J. Theor. Biol, vol.208, pp.27-36, 2001. ,
Trade-offs between competition and defense specialists among unicellular planktonic organisms: the "Killing the Winner, hypothesis revisited. Microbiol. Mol. Biol. Rev, vol.74, pp.42-57, 2010. ,
Virioplankton: viruses in aquatic ecosystems. Microbiol, Mol. Biol. Rev. MMBR, vol.64, pp.69-114, 2000. ,
Reduction of invasive bacteria in ethanol fermentations using bacteriophages, Biotechnol. Bioeng, vol.112, pp.1544-1553, 2015. ,
Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike, Mol. Cell, vol.34, pp.375-386, 2009. ,
Bacteriophage therapy against Enterobacteriaceae, Virol. Sin, vol.30, pp.11-18, 2015. ,
Jumbo Bacteriophages: An Overview, Front. Microbiol, vol.8, p.403, 2017. ,
Phages in the global fruit and vegetable industry, J. Appl. Microbiol, vol.118, pp.537-556, 2015. ,
,
, Epifluorescence and atomic force microscopy: Two innovative applications for studying phage-host interactions in Lactobacillus helveticus, J. Microbiol. Methods, vol.88, pp.41-46
Biodiversity of Lactobacillus helveticus bacteriophages isolated from cheese whey starters, J. Dairy Res, vol.82, pp.242-247, 2015. ,
Velvet: algorithms for de novo short read assembly using de Bruijn graphs, Genome Res, vol.18, pp.821-829, 2008. ,
Physical map of the genome of Oenococcus oeni PSU-1 and localization of genetic markers, Microbiology, vol.144, pp.1145-1156, 1998. ,
Genome organization in Oenococcus oeni strains studied by comparison of physical and genetic maps, Int. Microbiol, vol.11, p.237, 2008. ,
, , 2010.
, Recherche de corrélation entre les populations bactériennes et phagiques au cours du millésime 2015
Phages isolés au cours du millésime 2014 (n=72) ,
Phages isolés au cours du millésime 2015 (n=65) ,
ANIb entre les oenophages (A) selon le pourcentage de couverture des génomes comparés (B) ,
APC, 1) et de la myricétine (2) sur le développement lytique des phages OE33PA et unk67.1 ,