E. Altermannt, Tracing lifestyle adaptation in prokaryotic genomes, Front. Microbiol, vol.3, p.48, 2012.

P. K. Anderson, A. A. Cunningham, N. G. Patel, F. J. Morales, P. R. Epstein et al., Emerging infectious diseases of plants: Pathogen pollution, climate change and agrotechnology drivers, Trends Ecol. Evol, vol.19, issue.10, pp.535-579, 2004.

M. Antunez-lamas, E. Cabrera, and E. Lopez-solanilla, Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues, Mol. Microbiol, vol.74, pp.662-671, 2009.

S. K. Aoki, E. J. Diner, C. Roodenbeke, and . Kint-de, A widespread family of polymorphic contact-dependent toxin delivery systems in bacteria, Nature, vol.468, pp.439-442, 2010.

R. K. Arora and S. M. Khurana, 6 Major Fungal and Bacterial Diseases of Potato and their Management. Disease management of fruits and vegetables, vol.1, pp.189-231, 2004.

L. Babujee, J. Apodaca, V. Balakrishnan, P. Liss, P. J. Kiley et al., Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria, BMC Genomics, vol.13, p.110, 2012.

I. Barash and S. Manulis-sasson, Recent Evolution of Bacterial Pathogens: The GallForming Pantoea agglomerans Case, Annu. Rev. Phytopathol, vol.47, pp.133-52, 2009.

A. M. Barnard and G. P. Salmond, Quorum sensing in Erwinia species, Anal. Bioanal. Chem, vol.387, pp.415-423, 2007.

T. M. Blackburn, P. Py?ek, S. Bacher, J. T. Carlton, R. P. Duncan et al., A proposed unified framework for biological invasions, Trends Ecol. Evol, vol.26, issue.7, pp.333-339, 2011.

S. Bontemps-gallo, E. Madec, and J. Dondeyne, Concentration of osmoregulated periplasmic glucans (OPGs) modulates the activation level of the RcsCD RcsB phosphorelay in the phytopathogen bacteria Dickeya dadantii, Environ. Microbiol, vol.15, issue.3, pp.881-894, 2013.

A. Boughammoura, B. F. Matzanke, L. Böttger, S. Reverchon, E. Lesuisse et al., Differential role of ferritins in iron metabolism and virulence of the plantpathogenic bacterium Erwinia chrysanthemi 3937, J. Bacteriol, vol.190, pp.1518-1530, 2008.

S. Cesbron, M. Briand, S. Essakhi, S. Gironde, T. Boureau et al., Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation, Front. Plant Sci, vol.6, issue.126, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01455982

E. Chapelle, B. Alunni, P. Malfatti, L. Solier, J. Pédron et al., A straightforward and reliable method for bacterial in planta transcriptomics: Application to the Dickeya dadantii/Arabidopsis thaliana pathosystem, Plant J, vol.82, pp.352-362, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01436011

A. O. Charkowski, The soft rot Erwinia, Plant-Associated Bacteria, pp.423-505, 2006.

G. Choquet, N. Jehan, C. Pissavin, C. Blanco, and M. Jebbar, OusB, a broad-specificity ABC-type transporter from Erwinia chrysanthemi, mediates uptake of glycine betaine and choline with a high affinity, Appl. Environ. Microbiol, vol.71, issue.7, pp.3389-3398, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00358407

J. Cigna, P. Dewaegeneire, A. Beury, V. Gobert, and D. Faure, A gapA PCR-sequencing Assay for Identifying the Dickeya and Pectobacterium Potato Pathogens, Plant Dis, vol.12, issue.16, p.1810, 2017.
URL : https://hal.archives-ouvertes.fr/hal-02192067

P. Cornelis, Q. Wei, S. C. Andrews, and T. Vinckx, Iron homeostasis and management of oxidative stress response in bacteria, Met. Integr. biometal Sci, vol.3, pp.540-549, 2011.

A. Darrasse, S. Priou, A. Kotoujansky, &. Bertheau, and Y. , PCR and Restriction Fragment Length Polymorphism of a pel Gene as a Tool To Identify Erwinia carotovora in Relation to Potato Diseases, Appl. Environ. Microbiol, vol.60, pp.1437-1443, 1994.

M. A. Davis, M. K. Chew, and R. J. Hobbs, Don't judge species on their origins, Nature, vol.474, pp.153-154, 2011.

M. A. Davis, K. Thompson, and J. P. Grime, Invasibility: The local mechanism driving community assembly and species diversity, Ecography (Cop.), vol.28, issue.5, pp.696-704, 2005.

S. L. Defauw, Z. He, R. P. Larkin, and S. A. Mansour, Sustainable potato production and global food security, pp.3-19, 2012.

A. Delangle, A. F. Prouvost, V. Cogez, J. P. Bohin, J. M. Lacroix et al., Characterization of the Erwinia chrysanthemi gan locus, involved in galactan catabolism, J. Bacteriol, vol.189, issue.19, pp.7053-7061, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00169016

A. Dellagi, D. Segond, M. Rigault, M. Fagard, C. Simon et al., Microbial siderophores exert a subtle role in Arabidopsis during infection by manipulating the immune response and the iron status, Plant Physiol, vol.150, pp.1687-96, 2009.

D. W. Dingman, Growth of Escherichia coli O157:H7 in Bruised Apple (Malus domestica) Tissue as Influenced by Cultivar, Date of Harvest, and Source, Appl. Environ. Microbiol, vol.66, pp.1077-1083, 2000.

V. Duarte, S. H. Boer, . De, L. J. Ward, A. M. Oliveira et al., Characterization of atypical Erwinia carotovora strains causing blackleg of potato in Brazil, J. Appl. Microbiol, vol.96, pp.535-545, 2004.

D. Duca, J. Lorv, C. L. Patten, D. Rose, and B. R. Glick, Indole-3-acetic acid in plantmicrobe interactions, Antonie Van Leeuwenhoek, 2014.

G. Effantin, C. Rivasseau, M. Gromova, R. Bligny, and N. Hugouvieux-cotte-pattat, Massive production of butanediol during plant infection by phytopathogenic bacteria of the genera Dickeya and Pectobacterium, Mol. Microbiol, vol.82, issue.4, pp.988-997, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00651267

M. Fagard, A. Dellagi, C. Roux, C. Périno, M. Rigault et al., Arabidopsis thaliana expresses multiple lines of defense to counterattack Erwinia chrysanthemi, Mol. Plant. Microbe. Interact, vol.20, pp.794-805, 2007.

L. J. Francl, The Disease Triangle : A Plant Pathological Paradigm Revisited, Plant Health Instr, 2001.

T. Franza and D. Expert, Role of iron homeostasis in the virulence of phytopathogenic bacteria: An " la carte" menu, Mol. Plant Pathol, vol.14, pp.429-438, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01003310

M. Y. Galperin, A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts, BMC Microbiol, vol.5, p.35, 2005.

L. Gardan, C. Gouy, R. Christen, and R. Samson, Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov, Int. J. Syst. Evol. Microbiol, vol.53, pp.381-391, 2003.

R. Goude, S. Renaud, S. Bonnassie, T. Bernard, and C. Blanco, Glutamine, Glutamate, and -Glucosylglycerate Are the Major Osmotic Solutes Accumulated by Erwinia chrysanthemi Strain 3937, Appl. Environ. Microbiol, vol.70, pp.6535-6541, 2004.
URL : https://hal.archives-ouvertes.fr/hal-00358402

G. Gouesbet, M. Jebbar, S. Bonnassie, N. Hugouvieux-cotte-pattat, S. Himdi-kabbab et al., Erwinia chrysanthemi at high osmolarity: Influence of osmoprotectants on growth and pectate lyase production, Microbiology, vol.141, pp.1407-1412, 1995.

G. Gouesbet, A. Trautwetter, S. Bonnassie, L. F. Wu, and C. Blanco, Characterization of the Erwinia chrysanthemi osmoprotectant transporter gene ousA, J. Bacteriol, vol.178, issue.2, pp.447-455, 1996.

C. Grignon and H. Sentenac, AND IONIC CONDITIONS IN THE APOPLAST, Annu. Rev. Plant Phvsiol. Plant Mol. Bioi, vol.42, pp.3-28, 1991.

Z. Gu, R. Eils, and M. Schlesner, Complex heatmaps reveal patterns and correlations in multidimensional genomic data, Bioinformatics, 2016.

J. Hacker and J. B. Kaper, Pathogenicity Islands and the Evolution of Microbes, Annu. Rev. Microbiol, vol.54, pp.641-79, 2000.

M. Hassouni, . El, J. P. Chambost, D. Expert, F. Gijsegem et al., The minimal gene set member msrA, encoding peptide methionine sulfoxide reductase, is a virulence determinant of the plant pathogen Erwinia chrysanthemi, Biochemistry, vol.96, pp.887-892, 1999.

L. Hauben, E. R. Moore, L. Vauterin, M. Steenackers, J. Mergaert et al., Phylogenetic Position of Phytopathogens within the Enterobacteriaceae, Syst. Appl. Microbiol, vol.21, pp.384-397, 1998.

F. Hayes, The Horizontal Gene Pool -Bacterial Plasmids and Gene Spread, Heredity (Edinb), vol.86, pp.251-252, 2001.

V. Hélias, Pectobacterium spp. et Dickeya spp. de la pomme de terre : nouvelle nomenclature pour Erwinia spp., symptomatologie, épidémiologie et prophylaxie, Cah. Agric, vol.17, pp.349-354, 2008.

V. Hélias, P. Hamon, E. Huchet, J. V. Wolf, and D. Andrivon, Two new effective semiselective crystal violet pectate media for isolation of Pectobacterium and Dickeya, Plant Pathol, vol.61, pp.339-345, 2012.

F. Hommais, C. Oger-desfeux, F. Gijsegem, . Van, S. Castang et al., PecS is a global regulator of the symptomatic phase in the phytopathogenic bacterium Erwinia chrysanthemi 3937, J. Bacteriol, vol.190, issue.22, pp.7508-7522, 2008.
URL : https://hal.archives-ouvertes.fr/hal-01997038

F. Hommais, O. Zghidi-abouzid, C. Oger-desfeux, E. Pineau-chapelle, F. Gijsegem et al., LpxC and yafS are the most suitable internal controls to normalize real time RT-qPCR expression in the phytopathogenic bacteria Dickeya dadantii, PLoS One, vol.6, issue.5, p.20269, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01190471

C. Huang, G. E. Vallad, and H. Adkison, A Novel Xanthomonas sp. Causes Bacterial Spot of Rose ( Rosa spp.). Plant Dis, vol.97, pp.1301-1307, 2013.

N. Hugouvieux-cotte-pattat, G. Condemine, W. Nasser, and S. Reverchon, Regulation of Pectinolysis in Erwinia chrysanthemi, Annu. Rev. Microbiol, vol.50, pp.213-257, 1996.
URL : https://hal.archives-ouvertes.fr/hal-01997040

N. Hugouvieux-cotte-pattat, G. Condemine, and V. E. Shevchik, Bacterial pectate lyases, structural and functional diversity, Environ. Microbiol. Rep, vol.6, issue.5, pp.427-440, 2014.
URL : https://hal.archives-ouvertes.fr/hal-02001305

N. Hugouvieux, C. Patiat, and H. Dominguez, Environmental Conditions Affect Transcription of the Pectinase Genes of Erwinia chrysanthemi 3937, J. Bacteriol, vol.174, pp.7807-7818, 1992.

H. Hyytiäinen, Regulatory networks controlling virulence in the plant pathogen Erwinia carotovora ssp, 2005.

H. Hyytiäinen, S. Sjöblom, T. Palomäki, A. Tuikkala, and E. T. Palva, The PmrA-PmrB two-component system responding to acidic pH and iron controls virulence in the plant pathogen Erwinia carotovora ssp. carotovora, Mol. Microbiol, vol.50, issue.3, pp.795-807, 2003.

D. Jaap and M. A. Janse, Ruissen (1988) characterization and classification of Erwinia chrysanthemi strains from several hosts in the Netherlands, Am. Phytopathol. Soc, vol.78, issue.6, pp.800-808

S. Jafra, J. Przysowa, A. Gwizdek-wi?niewska, J. M. Wolf, and . Van-der, Potential of bulb-associated bacteria for biocontrol of hyacinth soft rot caused by Dickeya zeae, J. Appl. Microbiol, vol.106, pp.268-277, 2009.

A. Jain and P. Srivastava, Broad host range plasmids, FEMS Microbiol. Lett, vol.348, issue.2, pp.87-96, 2013.

X. Jiang, O. Zghidi-abouzid, C. Oger-desfeux, F. Hommais, N. Greliche et al., Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection, Environ. Microbiol, vol.18, issue.11, pp.3651-3672, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01997044

M. Juhas, J. R. Meer, . Van-der, M. Gaillard, R. M. Harding et al., Genomic islands: Tools of bacterial horizontal gene transfer and evolution, FEMS Microbiol. Rev, vol.33, pp.376-393, 2009.

K. Kazan and J. M. Manners, Linking development to defense: auxin in plant-pathogen interactions, Trends Plant Sci, vol.14, issue.7, pp.1360-1385, 2009.

N. T. Keen, C. Boyd, and B. Henrissat, Cloning and characterization of a xylanase gene from corn strains of Erwinia chrysanthemi, Mol. Plant. Microbe. Interact, vol.9, pp.651-658, 1996.
URL : https://hal.archives-ouvertes.fr/hal-00310809

L. Keller and M. G. Surette, Communication in bacteria: an ecological and evolutionary perspective, Nat. Rev. Microbiol, vol.4, pp.249-258, 2006.

S. Khayi, P. Blin, T. M. Chong, K. Chan, and D. Faure, Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222T, Stand. Genomic Sci, vol.11, p.87, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01439300

S. Khayi, P. Blin, J. Pédron, T. Chong, K. Chan et al., Population genomics reveals additive and replacing horizontal gene transfers in the emerging pathogen Dickeya solani, BMC Genomics, vol.16, p.788, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01217226

S. Khayi, J. Cigna, T. M. Chong, A. Quêtut-laurent, K. G. Chan et al., Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp, Int. J. Syst. Bacteriol, vol.66, pp.5379-5383, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01440805

S. Khayi, S. Mondy, A. Beury-cirou, M. Moumni, V. Helias et al., Genome Sequence of the Emerging Plant Pathogen Dickeya solani Strain RNS, Genome Announc, vol.2, pp.1270-1283, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01228835

M. Kinnunen, A. Dechesne, and C. Proctor, A conceptual framework for invasion in microbial communities, ISME J, vol.1, issue.7, pp.1751-7362, 2016.

E. V. Koonin, K. S. Makarova, and L. Aravind, Horizontal Gene Transfer in Prokaryotes: Quantification and Classification, Annu. Rev. Microbiol, vol.55, pp.709-751, 2001.

M. E. Kovach, P. H. Elzer, D. S. Hill, G. T. Robertson, M. A. Farris et al., Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes, Gene Res. Triangle Park USA. Tel, vol.166, pp.1-919, 1995.

S. Kwon, H. Kang, and J. Ryu, Phylogenetic Analysis of Erwinia Species Based on 16s rRNA Gene Sequences Int, J. Syst. Bacteriol, pp.1061-1067, 1997.

S. Laevens, M. Gillis, J. J. Lipuma, D. Henry, P. Vandamme et al., Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates, Int. J. Syst. Evol. Microbiol, vol.51, pp.1481-1490, 2001.

C. Lamb and R. Dixon, a (1997) the Oxidative Burst in Plant Disease Resistance, Annu. Rev. Plant Physiol. Plant Mol. Biol, vol.48, pp.251-75

A. S. Lang, O. Zhaxybayeva, and J. T. Beatty, Gene transfer agents: phage-like elements of genetic exchange, Nat. Rev. Microbiol, vol.10, issue.7, pp.472-482, 2012.

J. Laurila, V. Ahola, A. Lehtinen, T. Joutsjoki, A. Hannukkala et al., Characterization of Dickeya strains isolated from potato and river water samples in Finland, Eur. J. Plant Pathol, vol.122, pp.213-225, 2008.

A. Lebeau, S. Reverchon, S. Gaubert, Y. Kraepiel, E. Simond-côte et al., The GacA global regulator is required for the appropriate expression of Erwinia chrysanthemi 3937 pathogenicity genes during plant infection, Environ. Microbiol, vol.10, pp.545-559, 2008.
URL : https://hal.archives-ouvertes.fr/hal-01997046

B. Leff, N. Ramankutty, and . Foley, Geographic distribution of major crops across the world, Global Biogeochem. Cycles, vol.18, p.1009, 2004.

K. J. Livak and T. D. Schmittgen, Analysis of relative gene expression data using real-time quantitative PCR and, Methods, vol.25, pp.402-408, 2001.

A. Llama-palacios, E. López-solanilla, C. Poza-carrión, F. García-olmedo, and P. Rodríguez-palenzuela, The Erwinia chrysanthemi phoP-phoQ operon plays an important role in growth at low pH, virulence and bacterial survival in plant tissue, Mol. Microbiol, vol.49, issue.2, pp.347-357, 2003.

E. López-solanilla, F. García-olmedo, and P. Rodríguez-palenzuela, Inactivation of the sapA to sapF locus of Erwinia chrysanthemi reveals common features in plant and animal bacterial pathogenesis, Plant Cell, vol.10, pp.917-924, 1998.

M. I. Love, W. Huber, and S. Anders, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol, vol.15, p.550, 2014.

B. Ma, M. E. Hibbing, and H. Kim, Host Range and Molecular Phylogenies of the Soft Rot Enterobacterial Genera Pectobacterium and Dickeya, Phytopathology, vol.97, pp.1150-1163, 2007.

A. P. Macho, A. Guidot, P. Barberis, C. R. Beuzón, and S. Genin, A Competitive Index Assay Identifies Several Ralstonia solanacearum Type III Effector Mutant Strains with Reduced Fitness in Host Plants, Mol. Plant-Microbe Interact, vol.23, pp.1197-1205, 2010.

E. Madec, S. Bontemps-gallo, and J. M. Lacroix, Increased phosphorylation of the RcsB regulator of the RcsCDB phosphorelay in strains of Dickeya dadantii devoid of osmoregulated periplasmic glucans revealed by Phos-tag gel analysis, Microbiology, vol.160, pp.2763-2770, 2014.

C. A. Mallon, J. D. Elsas, . Van, and J. F. Salles, Microbial invasions: The process, patterns, and mechanisms, Trends Microbiol, vol.23, issue.11, pp.719-748, 2015.

J. Mansfield, S. Genin, and S. Magori, Top 10 plant pathogenic bacteria in molecular plant pathology, Mol. Plant Pathol, vol.13, issue.6, pp.614-643, 2012.

N. Mhedbi-hajri, P. Malfatti, J. Pédron, S. Gaubert, S. Reverchon et al., PecS is an important player in the regulatory network governing the coordinated expression of virulence genes during the interaction between Dickeya dadantii 3937 and plants, Environ. Microbiol, vol.13, pp.2901-2914, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01019484

E. Miguel, C. Poza-carrin, E. Lopez-solanilla, I. Aguilar, A. Llama-palacios et al., Evidence Against a Direct Antimicrobial Role of H 2 O 2 in the Infection of Plants by Erwinia chrysanthemi, Mol. Plant-Microbe Interact, vol.13, pp.421-429, 2000.

S. Nabhan, K. Wydra, M. Linde, and T. Debener, The use of two complementary DNA assays, AFLP and MLSA, for epidemic and phylogenetic studies of pectolytic enterobacterial strains with focus on the heterogeneous species Pectobacterium carotovorum, Plant Pathol, vol.61, pp.498-508, 2012.

L. Nachin and F. Barras, External pH: An Environmental Signal That Helps to Rationalize pel Gene Duplication in Erwinia chrysanthemi, MPMI, vol.13, pp.882-886, 2000.

L. Nachin, L. Loiseau, D. Expert, and F. Barras, SufC: An unorthodox cytoplasmic ABC/ATPase required for [Fe-S] biogenesis under oxidative stress, EMBO J, vol.22, issue.3, pp.427-437, 2003.

A. Naor and U. Gophna, Cell fusion and hybrids in Archaea: Prospects for genome shuffling and accelerated strain development for biotechnology, vol.4, pp.126-129, 2013.

A. Nassar, A. Darrasse, M. Lemattre, A. Kotoujansky, C. Dervin et al., Characterization of Erwinia chrysanthemi by pectinolytic isozyme polymorphism and restriction fragment length polymorphism analysis of PCR-amplified fragments of pel genes, Appl. Environ. Microbiol, vol.62, issue.7, pp.228-2235, 1996.

W. Nasser, C. Dorel, J. Wawrzyniak, F. Gijsegem, . Van et al., Vfm a new quorum sensing system controls the virulence of Dickeya dadantii, Environ. Microbiol, vol.15, pp.865-880, 2013.
URL : https://hal.archives-ouvertes.fr/pasteur-01001772

D. R. Nemergut, S. K. Schmidt, and T. Fukami, Patterns and Processes of Microbial Community Assembly. Microbiol. Mol. Biol. Rev, vol.77, issue.3, pp.342-346, 2013.

D. J. Norman, J. M. Yuen, and N. C. Hodge, New Disease on Ornamental Asparagus Caused by Xanthomonas campestris in Florida, Plant Dis, vol.81, pp.847-850, 1997.

P. Cortesi, F. Bartoli, C. Pizzatti, W. Y. Song, and .. W. , First report of Acidovorax avenae ssp. avenae on rice in Italy, J. Plant Pathol, vol.87, pp.75-76, 2005.

J. S. Parkinson and E. C. Kofoid, COMMUNICATION MODULES IN BACTERIAL SIGNALING PROTEINS, Annu. Rev. Genet, vol.26, pp.71-112, 1992.

N. Parkinson, L. Pritchard, R. Bryant, I. Toth, and J. Elphinstone, Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis, Eur. J. Plant Pathol, 2014.

J. Pédron, S. Mondy, Y. Raoul-des-essarts, F. Gijsegem, . Van et al., Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire, BMC Genomics, vol.15, p.283, 2014.

K. Pérombelon and A. , Blackleg and other potato diseases caused by soft rot Erwinias : proposal for revision terminology, Plant Dis, vol.71, pp.283-285, 1987.

M. C. Pérombelon, Potato diseases caused by soft rot Erwinias: an overview of pathogenesis, Plant Pathol, vol.51, pp.1-12, 2002.

M. C. Pérombelon, M. M. Lopez, J. Carbonell, and L. J. Hyman, Effects of contamination by Erwinia carotovora subsp. carotovora and E. carotovora subsp. atroseptica of potato seed tubers and of cultivar resistance on blanking or nonemergence and blackleg development in Valencia, Spain. Potato Res, vol.31, pp.591-599, 1988.

L. Pritchard, S. Humphris, S. Baeyen, M. Maes, J. Vaerenbergh et al., Draft Genome Sequences of Four Dickeya dianthicola and Four Dickeya solani Strains, Genome Announc, vol.1, pp.87-99, 2013.

L. Pritchard, S. Humphris, G. S. Saddler, N. M. Parkinson, V. Bertrand et al., Detection of phytopathogens of the genus Dickeya using a PCR primer prediction pipeline for draft bacterial genome sequences, Plant Pathol, vol.62, pp.587-596, 2013.

R. Des-essarts, Y. Mondy, S. Hélias, V. Faure, and D. , Genome Sequence of the Potato Plant Pathogen Dickeya dianthicola Strain RNS04.9, Genome Announc, vol.3, pp.581-596, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01433048

S. Reverchon, F. Gijsegem, . Van, G. Effantin, O. Zghidi-abouzid et al., Systematic targeted mutagenesis of the MarR/SlyA family members of Dickeya dadantii 3937 reveals a role for MfbR in the modulation of virulence gene expression in response to acidic pH, Mol. Microbiol, vol.78, issue.4, pp.1018-1037, 2010.
URL : https://hal.archives-ouvertes.fr/hal-01997080

S. Reverchon and W. Nasser, Dickeya ecology, environment sensing and regulation of virulence programme, Environ. Microbiol. Rep, vol.5, pp.622-636, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01997073

S. Reverchon, C. Rouanet, D. Expert, and W. Nasser, Characterization of indigoidine biosynthetic genes in Erwinia chrysanthemi and role of this blue pigment in pathogenicity, J. Bacteriol, vol.184, pp.654-665, 2002.
URL : https://hal.archives-ouvertes.fr/hal-01997079

I. Río-Álvarez, C. Muñoz-gómez, M. Navas-vásquez, P. M. Martínez-garcía, M. Antúnez-lamas et al., Role of Dickeya dadantii 3937 chemoreceptors in the entry to Arabidopsis leaves through wounds, Mol. Plant Pathol, vol.16, pp.685-698, 2015.

I. Rio-alvarez, J. J. Rodríguez-herva, R. Cuartas-lanza, I. Toth, L. Pritchard et al., Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides, Mol. Plant. Microbe. Interact, vol.25, pp.523-556, 2012.

C. M. Rojas, J. H. Ham, W. Deng, J. J. Doyle, and A. Collmer, HecA, a member of a class of adhesins produced by diverse pathogenic bacteria, contributes to the attachment, aggregation, epidermal cell killing, and virulence phenotypes of Erwinia chrysanthemi EC16 on Nicotiana clevelandii seedlings, Proc. Natl. Acad. Sci, vol.99, pp.13142-13147, 2002.

P. Rousselle, Y. Robert, and J. C. Crosnier, , 1996.

R. Samson, J. B. Legendre, R. Christen, . Fischer-le, M. Saux et al., Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dick. Int. J. Syst. Evol. Microbiol, vol.55, pp.1415-1427, 2005.

N. W. Schaadn, Emerging plant pathogenic bacteria and global warming, Pseudomonas syringae, 2008.

J. A. Sepulchre, S. Reverchon, and W. Nasser, Modeling the onset of virulence in a pectinolytic bacterium, J. Theor. Biol, vol.244, pp.239-257, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00138078

M. S?awiak, J. R. Beckhoven, . Van, A. G. Speksnijder, R. Czajkowski et al., , p.3, 2009.

, Dickeya spp. strains isolated from potato in Europe, Eur. J. Plant Pathol, vol.125, pp.245-261

S. M. Soucy, J. Huang, and J. P. Gogarten, Horizontal gene transfer: building the web of life, Nat. Rev. Genet, vol.16, pp.472-482, 2015.

R. N. Strange and P. R. Scott, Plant Disease: A Threat to Global Food Security, Annu. Rev. Phytopathol, vol.43, pp.83-116, 2005.

G. Thomas and G. Sansonetti, New light on hidden treasure: International Year of the Potato 2008, an end of year review Food & Agriculture Org, 2009.

I. K. Toth, J. M. Wolf, . Van-der, G. Saddler, E. Lojkowska et al., Dickeya species: An emerging problem for potato production in Europe, Plant Pathol, vol.60, pp.385-399, 2011.

T. Tseng, B. M. Tyler, and J. C. Setubal, Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology, BMC Microbiol, vol.9, 2009.

L. Tsror, O. Erlich, S. Lebiush, M. Hazanovsky, U. Zig et al., Assessment of recent outbreaks of Dickeya sp. (syn. Erwinia chrysanthemi) slow wilt in potato crops in Israel, Eur. J. Plant Pathol, vol.123, pp.311-320, 2009.

L. Tsror-lahkim, O. Erlich, S. Lebiush, J. Wolf, . Van-der et al., First report of potato blackleg caused by a biovar 3 Dickeya sp, 2011.

A. Untergasser, I. Cutcutache, T. Koressaar, J. Ye, B. C. Faircloth et al., Primer3-new capabilities and interfaces, Nucleic Acids Res, vol.40, pp.1-12, 2012.

J. Vaerenbergh, . Van, S. Baeyen, P. Vos, . De et al., Sequence diversity in the Dickeya flic gene: Phylogeny of the Dickeya genus and taqman® PCR for "D. solani, Europe. PLoS One, vol.7, issue.5, p.35738, 2012.

L. Valéry, H. Fritz, J. C. Lefeuvre, and D. Simberloff, In search of a real definition of the biological invasion phenomenon itself, Biol. Invasions, vol.10, pp.1345-1351, 2008.

M. Vellend, Conceptual Synthesis in Community Ecology, Q. Rev. Biol, vol.85, issue.2, pp.183-206, 2010.

B. Venkatesh, L. Babujee, H. Liu, P. Hedley, T. Fujikawa et al., The Erwinia chrysanthemi 3937 PhoQ sensor kinase regulates several virulence determinants, J. Bacteriol, vol.188, issue.8, pp.3088-3098, 2006.

J. E. Waals, . Van-der, K. Krüger, A. C. Franke, A. J. Haverkort et al., Climate Change and Potato Production in Contrasting South African Agro-Ecosystems 3. Effects on Relative Development Rates of Selected Pathogens and Pests, Potato Res, vol.56, pp.67-84, 2013.

C. Wandersman, P. Delepelaire, S. Letoffe, and M. Schwartz, Characterization of Erwinia chrysanthemi extracellular proteases: cloning and expression of the protease genes in Escherichia coli, J. Bacteriol, vol.169, issue.11, pp.5046-5043, 1987.

C. A. Winslow, J. Broadhurst, R. E. Buchanan, C. J. Krumwiede, L. A. Rogers et al., The families and genera of the bacteria final report of the committee of the society of American bacteriologists on characterization and classification of bacterial types, J Bacteriol, vol.5, issue.3, pp.191-229, 1920.

G. L. Winsor, B. Khaira, T. Rossum, . Van, R. Lo et al., The Burkholderia Genome Database: Facilitating flexible queries and comparative analyses, Bioinformatics, vol.24, issue.3, pp.2803-2804, 2008.

J. M. Wolf, . Van-der, E. H. Nijhuis, and M. J. Kowalewska, Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum), Int. J. Syst. Evol. Microbiol, vol.64, pp.768-774, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01208723

X. Xu, S. Pan, and S. Cheng, Genome sequence and analysis of the tuber crop potato, Nature, vol.475, pp.189-95, 2011.

C. Yang, M. Gavilanes-ruiz, Y. Okinaka, R. Vedel, I. Berthuy et al., ) hrp genes of Erwinia chrysanthemi 3937 are important virulence factors, Mol. Plant. Microbe. Interact, vol.15, pp.472-480, 2002.

D. E. Zaag and D. Horton, Potato production and utilization in world perspective with special reference to the tropics and sub-tropics, Potato Res, vol.26, pp.323-362, 1983.