Hybridization and speciation, Journal of Evolutionary Biology, vol.26, pp.229-246, 2013. ,

Stopping times and tightness. ii, Ann. Probab, vol.17, issue.2, pp.586-595, 1989. ,

On the central role of the scale invariant poisson processes on (0,infty), Microsurveys in discrete probability, pp.21-41, 1997. ,

, Amer. Math. Soc, 1998.

Why sex and recombination?, Cold Spring Harb Symp Quant Biol, vol.74, pp.187-95, 2009. ,

Genetic linkage and natural selection, Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol.365, pp.2559-2569, 1552. ,

A fast, powerful method for detecting identity by descent, The American Journal of Human Genetics, vol.88, issue.2, pp.173-182, 2011. ,

Hybrid origin of audubon's warbler, Molecular Ecology, vol.20, pp.2380-2389, 2011. ,

Why sex and recombination?, Science, vol.281, issue.5385, pp.1986-90, 1998. ,

Junctions in inbreeding, Genetica, vol.26, issue.1, pp.392-406, 1953. ,

Recent progress in coalescent theory, Ensaios Matemáticos [Mathematical Surveys] 16. Sociedade Brasileira de Matemática, 2009. ,

Inferring coancestry in population samples in the presence of linkage disequilibrium, Genetics, vol.190, issue.4, pp.1447-1460, 2012. ,

, Convergence of probability measures. Wiley Series in probability and Mathematical Statistics: Tracts on probability and statistics, 1968.

Variation, isolating mechanisms, and hybridization in certain toads, Genetics, vol.26, issue.4, pp.398-417, 1941. ,

A renewal theorem, Duke Math. J, vol.15, issue.1, pp.145-150, 1948. ,

The rate of genome stabilization in homoploid hybrid species, Evolution, vol.62, issue.2, pp.266-275, 2008. ,

Asymptotic behavior of a Moran model with mutations, drift and recombination among multiple loci, Journal of Mathematical Biology, vol.61, issue.3, pp.455-473, 2010. ,

Is Wright's shifting balance process important in evolution? Evolution, vol.54, pp.307-317, 2000. ,

Hybridization promotes speciation in coenonympha butterflies, Molecular Ecology, vol.24, issue.24, pp.6209-6222, 2015. ,

The role of haplotypes in candidate gene studies, Genetic Epidemilogy, vol.27, issue.4, pp.321-333, 2004. ,

, Orr. Speciation. Sinauer Associates, 2004.

The effect of population history on the lengths of ancestral chromosome segments, Genetics, vol.162, issue.1, pp.449-458, 2002. ,

A model for the length of tracts of identity by descent in finite random mating populations, Theoretical Population Biology, vol.64, issue.2, pp.141-150, 2003. ,

A modified hausdorff distance for object matching, Proceedings of the 12th IAPR International Conference on, vol.1, pp.566-568, 1994. ,

Genetics and the origin of species, 1937. ,

Endless Forms: Species and Speciation, 1998. ,

Ernst Mayr and the modern concept of species, Proceedings of the National Academy of Sciences, vol.102, issue.1, pp.6600-6607, 2005. ,

Random Walks and Electric Networks, Mathematical Association of America, vol.22, 1984. ,

Probability Models for DNA Sequence Evolution, 2008. ,

Markov processes: characterization and convergence, 2005. ,

Diffusion approximations of the two-locus Wright-Fisher model, J. Math. Biol, vol.27, pp.17-28, 1989. ,

Partitioning, duality, and linkage disequilibria in the moran model with recombination, Journal of mathematical biology, vol.73, issue.1, pp.161-197, 2016. ,

Some Mathematical Models from Population Genetics: École D'Été de Probabilités de Saint-Flour XXXIX-2009, Lecture Notes in Mathematics, 2011. ,

Diffusion processes in genetics, Proceedings of the Second Berkeley Symposium on Mathematical Statistics and Probability, pp.227-246, 1950. ,

The evolutionary advantage of recombination, Genetics, vol.78, issue.2, pp.737-756, 1974. ,

The Genetical Theory of Natural Selection, 1930. ,

The Theory of Inbreeding, 1949. ,

A fuller theory of "junctions" in inbreeding, Heredity, vol.8, pp.187-197, 1954. ,

An algebraically exact examination of junction formation and transmission in parent-offspring inbreeding, Heredity, vol.13, pp.179-186, 1959. ,

A microscopic probabilistic description of a locally regulated population and macroscopic approximations, Ann. Appl. Probab, vol.14, issue.4, pp.1880-1919, 2004. ,

Dynamics of speciation and diversification in a metapopulation, Evolution, vol.54, pp.1493-1501, 2000. ,

Some applications of the theory of junctions, Biometrics, pp.85-117, 1964. ,

Evolution and speciation on holey adaptive landscapes, Trends Ecol Evol, vol.12, issue.8, pp.307-312, 1997. ,

Fitness Landscapes and the Origin of Species, vol.41, 2004. ,

Adaptive speciation: it is not that simple, Evolution, vol.59, pp.696-699, 2005. ,

Percolation on the fitness hypercube and the evolution of reproductive isolation, J Theor Biol, vol.184, issue.1, pp.51-64, 1997. ,

Les avatars du gène : la théorie néodarwinienne de l'évolution. Collection Regards sur la science, 1997. ,

Evolution by jumps: Francis Galton and William Bateson and the mechanism of evolutionary change, Genetics, vol.159, issue.4, pp.1383-1392, 2001. ,

A coalescent dual process for a Wright-Fisher diffusion with recombination and its applications to haplotype partitioning. Theor, Popul. Biol, vol.112, pp.126-138, 2016. ,

Rapid parapatric speciation on holey adaptive landscapes, Proc. R. Soc. Lond. B, vol.265, pp.1483-1489, 1998. ,

Patterns of parapatric speciation, Evolution, vol.54, issue.4, pp.1126-1134, 2000. ,

An ancestral recombination graph, Progress in Population Genetics and Human Evolution, IMA Volumes in Mathematics and its Applications, vol.87, pp.257-270, 1997. ,

Hereditary basis of melanosis in hybrid fishes, Amer. J. Cancer, vol.15, pp.1495-1523, 1931. ,

Plant speciation. Columbia University Press, 1981. ,

Neutral two-locus multiple allele models with recombination ,

, Popul. Biol, vol.19, issue.2, pp.169-186, 1981.

The two-locus ancestral graph, Selected Proceeedings of the Symposium on Applied Probability, pp.100-117, 1991. ,

High-throughput genotyping by whole-genome resequencing, Genome Research, vol.19, issue.6, pp.1068-1076, 2009. ,

From random walks to distances on unweighted graphs, Proceedings of the 28th International Conference on Neural Information Processing Systems, NIPS'15, pp.3429-3437, 2015. ,

Properties of the neutral model with intragenic recombination ,

, Theor.Pop.Biol, vol.23, issue.2, pp.213-201, 1983.

Qsar and qspr molecular descriptors computed from the resistance distance and electrical conductance matrices, ACH Models in Chemistry, vol.5, issue.6, pp.607-632, 2000. ,

The breakdown of genomic ancestry blocks in hybrid lineages given a finite number of recombination sites, Evolution, vol.72, issue.4, 2018. ,

Foundations of modern probability. Probability and its Applications, 2002. ,

Classification of selection-migration structures and conditions for a protected polymorphism, Evol. Biol, pp.61-204, 1982. ,

Reticulate phylogeny of gastropod-shellbreeding cichlids from lake tanganyika-the result of repeated introgressive hybridization, BMC Evolutionary Biology, vol.7, issue.1, p.7, 2007. ,

Stepping-stone model of population, Annual Report of the National Institute of Genetics, vol.3, pp.62-63, 1953. ,

Evolutionary rate at the molecular level, Nature, vol.217, 1968. ,

, The coalescent. Stochastic Processes and their Applications, vol.13, pp.235-248, 1982.

The average number of generations until extinction of an individual mutant gene in finite population, Genetics, vol.3, issue.63, 1969. ,

Resistance distance, Journal of Mathematical Chemistry, vol.12, pp.81-95, 1993. ,

Multivariate distributions and the moment problem, Journal of Multivariate Analysis, vol.113, pp.7-18, 2013. ,

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of lake victoria cichlid fishes, Molecular Ecology, vol.22, issue.11, pp.2848-2863, 2013. ,

The branching process with logistic growth, Ann. Appl. Prob, vol.15, pp.1506-1535, 2005. ,

The link prediction problem for social networks, International Conference on Information and Knowledge Management (CIKM), pp.556-559, 2003. ,

Thomas Hunt Morgan, genetic recombination, and gene mapping, Nature Education, vol.1, issue.1, p.205, 2008. ,

The concept of duality and applications to markov processes arising in neutral population sgenetics models, Bernoulli, vol.5, issue.5, pp.761-777, 1999. ,

Forward and backward diffusion approximations for haploid exchangeable population models, Stochastic Processes and their Applications, vol.95, pp.133-149, 2001. ,

Les mathématiques de l'hérédité. Barnéoud frères, 1948. ,

170 years of "lock-and-key": Genital morphology and reproductive isolation, Int. J. Evol. Biol, 2012. ,

Systematics and the Origin of Species, 1942. ,

Distribution of parental genome blocks in recombinant inbred lines, Genetics, vol.189, issue.2, pp.645-654, 2011. ,

URL : https://hal.archives-ouvertes.fr/hal-01000534

Marker densities and the mapping of ancestral junctions, Genetical research, vol.85, issue.01, pp.69-79, 2005. ,

Gregor Mendel and the principles of inheritance, Nature Education, vol.1, issue.1, p.134, 2008. ,

Barac-Lauc. Runs of homozygosity in european populations, The American Journal of Human Genetics, vol.83, issue.3, pp.359-372, 2008. ,

The real cost of sequencing: scaling computation to keep pace with data generation, Genome Biology, vol.17, issue.1, p.53, 2016. ,

How does geographical distance translate into genetic distance?, 2017. ,

URL : https://hal.archives-ouvertes.fr/hal-01484800

Speciation by hybridization in heliconius butterflies, Nature, vol.441, issue.7095, pp.868-871, 2006. ,

Isolating mechanisms, evolution and temperature, Biol. Symp, vol.811, pp.71-125, 1942. ,

The relation of recombination to mutational advance, Mutat. Res, vol.106, pp.2-9, 1964. ,

An invasive lineage of sculpins, cottus sp. (pisces, teleostei) in the rhine with new habitat adaptations has originated from hybridization between old phylogeographic groups, Proceedings of the Royal Society B, vol.272, pp.2379-2387, 2005. ,

Models of evolution of reproductive isolation, Genetics, vol.103, pp.557-579, 1983. ,

Instability of the sexual continuum, Proc. R. Soc. Lond. B, vol.264, pp.1389-1393, 1997. ,

Isolating hereditary material: Frederick Griffith, Nature Education, vol.1, issue.1, p.105, 2008. ,

Why have sex? the population genetics of sex and recombination, Biochemical Society Transactions, vol.34, issue.4, 2006. ,

Developing the chromosome theory, Nature Education, vol.1, issue.1, p.44, 2008. ,

The population genetics of speciation: The evolution of hybrid incompatibilities, Genetics, vol.139, pp.1805-1815, 1995. ,

population genetic inference from genomic sequence variation, Genome Res, vol.20, issue.3, pp.291-300, 2010. ,

Genetic and environmental melanoma models in fish, Pigment Cell and Melanoma Research, vol.23, issue.3, pp.314-337, 2010. ,

Discovery of DNA structure and function: Watson and Crick, Nature Education, vol.1, issue.1, p.100, 2008. ,

Image segmentation using commute times, Proceedings of the 16th British Machine Vision Conference (BMVC), pp.929-938, 2005. ,

A high-density genetic map for soybean based on specific length amplified fragment sequencing, PLoS ONE, vol.9, issue.8, p.104871, 2014. ,

The geography of recent genetic ancestry across, Europe. PLoS biology, vol.11, p.1001555, 2013. ,

Inferring recent demography from isolation by distance of long shared sequence blocks, Genetics, vol.205, issue.3, pp.1335-1351, 2017. ,

Topological descriptors in drug design and modeling studies, Molecular Diversity, vol.4, issue.8, pp.321-323, 2004. ,

A high-resolution map of arabidopsis recombinant inbred lines by whole-genome exon array hybridization, PLoS Genetics, vol.2, issue.9, 2006. ,

Linkage disequilibrium -understanding the evolutionary past and mapping the medical future, Nature Reviews. Genetics, vol.9, issue.6, pp.477-485, 2008. ,

Host shift to an invasive plant triggers rapid animal hybrid speciation, Nature, vol.436, issue.7050, pp.546-549, 2005. ,

,

,

Detecting recent positive selection in the human genome from haplotype structure, Nature, vol.419, pp.832-837, 2002. ,

The Problem of Moments, American Mathematical Society, 1950. ,

The distribution of the fraction of the genome identical by descent in finite random mating populations, Genetical Research, vol.35, issue.2, pp.131-155, 1980. ,

An ultrahigh-density, transcript-based, genetic map of lettuce, Genes| Genomes| Genetics, vol.3, issue.4, pp.617-631, 2013. ,

Experimental evolution with caenorhabditis nematodes, Genetics, vol.2, issue.206, pp.691-716, 2017. ,

Hitting and commute times in large random neighborhood graphs, Journal of Machine Learning Research, vol.15, issue.1, pp.1751-1798, 2014. ,

Selection in the rapid evolution of gamete recognition proteins in marine invertebrates, Cold Spring Harbor Perspectives in Biology, vol.3, issue.11, 2011. ,

Coalescent Theory: An Introduction, 2016. ,

On the number of ancestor to a DNA sequence, Genetics, vol.147, pp.1459-1468, 1997. ,

The roles of mutation, inbreeding, crossbreeding, and selection in evolution, Proceedings of the Sixth International Congress on Genetics, pp.355-366, 1932. ,

Isolation by distance, Genetics, vol.28, issue.2, p.114, 1943. ,

High-density haplotyping with microarray-based expression and single feature polymorphism markers in arabidopsis, Genome Research, vol.16, issue.6, pp.787-795, 2006. ,

Parent-independent genotyping for constructing an ultrahighdensity linkage map based on population sequencing, Proceedings of the National Academy of Sciences, vol.107, pp.10578-10583, 2010. ,

First passage time to allopatric speciation, Interface Focus, vol.3, issue.6, 2013. ,

Smallness of the number of incompatibility loci can facilitate parapatric speciation, Journal of Theoretical Biology, vol.405, pp.36-45, 2015. ,

Clustering using a random walk based distance measure, Proceedings of the 13th Symposium on Artificial Neural Networks (ESANN), pp.317-324, 2005. ,