, GATA promoter motif [LRE] 19512765 19512770 agataa

, GATA promoter motif [LRE] 19512105 19512110 agataa

, GATA promoter motif [LRE] 19511560 19511565 agatag

, GATA promoter motif [LRE] 19511519 19511524 tgatag

, GATA promoter motif [LRE] 19511479 19511484 agatag

, GATA promoter motif [LRE] 19511297 19511302 tgataa

, GATA promoter motif [LRE] 19511090 19511095 agataa

, GATA promoter motif [LRE] 19510347 19510352 agatag

, GATA promoter motif [LRE] 19510338 19510343 agatag

, GCC-box promoter motif 19511400 19511405 gccgcc

, Ibox promoter motif 19510763 19510768 gataag

, Ibox promoter motif 19511296 19511301 gataag

, L1-box promoter motif 19510946 19510953 taaatgca

, L1-box promoter motif 19510808 19510815 taaatgta

, SORLIP2 19510383 19510387 gggcc

A. Thaliana, , vol.506, p.25, 20045-01-19.

, TAIR7 Annotations (green=protein-coding gene, red=pseudogene/transposon, others=various RNA types)

, Z-Scores of NimbleGen Log Ratios Histone H3K9 Dimethylation to H3 via MNase Digestion Z-Scores of NimbleGen Log Ratios Histone H3K9 Dimethylation to H3 via Crosslinking Histone H3 Lysine K27 Trimethylation Original Unique HMM BPmap LHP1 DamID HMM LHP1 GATC Merged Low Nucleosome Density HMM Methylation in Wild Type

, Methylation in Triple Mutant (ddc->mCIP->bkgndCorr->uniqueProbes->TileMap pV)

, Methylation in Single Mutant (met1->mCIP->bkgndCorr->uniqueProbes->TileMap pV)

, Methylation in Wild Type (Columbia->HMBD->bkgndCorr->uniqueProbes->TileMap pV)

, Methylation in Wild Type (Columbia->mCIP->bkgndCorr->remapProbes->TileMap pV)

, Methylation in Triple Mutant (ddc->mCIP->bkgndCorr->remapProbes->TileMap pV)

, Methylation in Single Mutant (met1->mCIP->bkgndCorr->remapProbes->TileMap pV)

, Methylation in Wild Type (Columbia->HMBD->bkgndCorr->remapProbes->TileMap pV)

B. Nature and . Cs, 64 Wild Type Bisulfite Lanes (green=CG, blue=CHG, red=CHH; dark=methylated) H3K9m2MD, p.3

, Col.mCIP:buTMap ddc.mCIP:buTMap met1.mCIP:buTMap Col.HMBD:buTMap Col.mCIP:brTMap ddc.mCIP:brTMap met1.mCIP:brTMap Col.HMBD:brTMap Figure 5.6: Methylation map of the TT10 gene region

, Methylation map of the DNA in seedlings have been pictured by the Genome Browser at http:// epigenomics.mcdb.ucla, Genome Bioinformatics

, Transposon in TT10 promoter Figure 5.7: Alignment of transposon sequence

, Alignment of the Col-0 wild-type intergenic region -2.2-kb to -1.0-kb of TT10 promoter. In-del is a promoter fragment identified by Hirofumi Ishihara which is not present in Ler

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