Bacterial and archael resistance to ionizing radiation, J Phys, vol.261, p.12005, 2011. ,
Oxidative stress resistance in Deinococcus radiodurans, Microbiol Mol Biol Rev, vol.75, pp.133-191, 2011. ,
Biology of extreme radiation resistance: the way of Deinococcus radiodurans, Cold Spring Harb Perspect Biol, vol.5, 2013. ,
A decade of biochemical and structural studies of the DNA repair machinery of Deinococcus radiodurans: major findings, functional and mechanistic insight and challenges, Comput Struct Biotechnol J, vol.14, pp.168-176, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01430547
Reassembly of shattered chromosomes in Deinococcus radiodurans, Nature, vol.443, pp.569-573, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00116806
A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans, PLoS Genet, vol.6, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00506306
The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity, DNA Repair (Amst), vol.10, pp.1223-1231, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00764859
Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance?, Science, vol.299, pp.254-256, 2003. ,
A ring-like nucleoid is not necessary for radioresistance in the Deinococcaceae, BMC Microbiol, vol.5, p.17, 2005. ,
Death by protein damage in irradiated cells, DNA Repair (Amst), vol.11, pp.12-21, 2012. ,
How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress, FEMS Microbiol Rev, vol.29, pp.361-375, 2005. ,
Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance, Genetics, vol.168, pp.21-33, 2004. ,
Identification of new genes contributing to the extreme radioresistance of Deinococcus radiodurans using a Tn5-based transposon mutant library, PLoS One, vol.10, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01464760
The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation, J Bacteriol, vol.183, pp.6951-6956, 2001. ,
Quantification of RecA protein in Deinococcus radiodurans reveals involvement of RecA, but not LexA, in its regulation, Mol Genet Genomics, vol.268, pp.28-41, 2002. ,
Down-regulation of radioresistance by LexA2 in Deinococcus radiodurans, Microbiology, vol.152, pp.3217-3226, 2006. ,
Radiation response in Deinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO, Mol Microbiol, vol.94, pp.434-449, 2014. ,
DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in SUPPLEMENTARY REFERENCES, 2015. ,
Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources, PLoS One, vol.6, p.20081, 2011. ,
Characterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a cyclic AMP receptor protein-like DNA binding protein, J Bacteriol, vol.187, pp.7795-7804, 2005. ,
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator, J Biotechnol, vol.135, pp.340-350, 2008. ,
A novel CRP-dependent regulon controls expression of competence genes in Haemophilus influenzae, J Mol Biol, vol.347, pp.735-747, 2005. ,
Improved Complete Genome Sequence of the Extremely Radioresistant Bacterium Deinococcus radiodurans R1 Obtained Using PacBio Single-Molecule Sequencing, Genome Announc, vol.4, 2016. ,
Oxidative Stress Resistance in Deinococcus radiodurans, Microbiol Mol Biol Rev, vol.75, pp.133-191, 2011. ,
DNA repair in hyperthermophilic and hyperradioresistant microorganisms, Curr Opin Microbiol, vol.25, pp.103-112, 2015. ,
A new perspective on radiation resistance based on Deinococcus radiodurans, Nat Rev Microbiol, vol.7, pp.237-245, 2009. ,
Bacterial and archael resistance to ionizing radiation, J Phys, 2011. ,
Reassembly of shattered chromosomes in Deinococcus radiodurans, Nature, vol.443, pp.569-573, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00116806
Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans, Cell, vol.136, pp.1044-1055, 2009. ,
A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans, PLoS Genet, vol.6, p.1000774, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00506306
DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans, DNA Repair (Amst), vol.9, pp.805-812, 2010. ,
The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity, DNA Repair (Amst), vol.10, pp.1223-1231, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00764859
PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation, Mol Microbiol, vol.54, pp.278-285, 2004. ,
PprA contributes to Deinococcus radiodurans resistance to nalidixic acid, genome maintenance after DNA damage and interacts with deinococcal topoisomerases, PLoS One, vol.9, p.85288, 2014. ,
The PprA protein is required for accurate cell division of gamma-irradiated Deinococcus radiodurans bacteria, DNA Repair (Amst), vol.12, pp.265-272, 2013. ,
PprA, a pleiotropic protein for radioresistance, works through DNA gyrase and shows cellular dynamics during postirradiation recovery in Deinococcus radiodurans, J Genet, vol.93, pp.349-354, 2014. ,
PprA protein is involved in chomosome segregation via its physical and functional interaction with DNA gyrase in irradiated Deinococcus radiodurans bacteria, MSphere, vol.1, pp.36-51, 2016. ,
Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli, Mol Gen Genet, vol.250, pp.241-251, 1996. ,
Characterization of a prokaryotic SMC protein involved in chromosome partitioning, Genes Dev, vol.12, pp.1254-1259, 1998. ,
Physical and functional interaction between the condensin MukB and the decatenase topoisomerase IV in Escherichia coli, Proc Natl Acad Sci, vol.107, pp.18826-18831, 2010. ,
Interlinked sister chromosomes arise in the absence of condensin during fast replication in B. subtilis, Curr Biol, vol.24, pp.293-298, 2014. ,
The SMC condensin complex is required for origin segregation in Bacillus subtilis, Curr Biol, vol.24, pp.287-292, 2014. ,
The Deinococcus radiodurans SMC protein is dispensable for cell viability yet plays a role in DNA folding, Extremophiles, vol.13, pp.827-837, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00527433
Additive effects of SbcCD and PolX deficiencies in the in vivo repair of DNA double strand breaks in Deinococcus radiodurans, J Bacteriol, vol.189, pp.4784-4790, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00195312
Structural and functional characterization of an SMC-like protein RecN: new insights into double-strand break repair, Structure, vol.20, pp.2076-2089, 2012. ,
Repair of DNA double-strand breaks in Escherichia coli K12 requires a functional recN product, Mol Gen Genet, vol.195, pp.267-274, 1984. ,
Visualization of DNA double-strand break repair in live bacteria reveals dynamic recruitment of Bacillus subtilis RecF, RecO and RecN proteins to distinct sites on the nucleoids, Mol Microbiol, vol.52, pp.1627-1639, 2004. ,
RecA protein recruits structural maintenance of chromosomes (SMC)-like RecN protein to DNA double-strand breaks, J Biol Chem, vol.288, pp.29229-29237, 2013. ,
Recruitment of Bacillus subtilis RecN to DNA double-strand breaks in the absence of DNA end processing, J Bacteriol, vol.188, pp.353-360, 2006. ,
The cohesin-like RecN protein stimulates RecA-mediated recombinational repair of DNA double-strand breaks, Nat Commun, vol.8, p.15282, 2017. ,
RecN is a cohesin-like protein that stimulates intermolecular DNA interactions in vitro, J Biol Chem, vol.285, pp.16521-16529, 2010. ,
Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance, Genetics, vol.168, pp.21-33, 2004. ,
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation, Proc Natl Acad Sci U S A, vol.100, pp.4191-4196, 2003. ,
Deinococcus radiodurans -the consummate survivor, Nat Rev Microbiol, vol.3, pp.882-892, 2005. ,
Single strand annealing plays a major role in RecA-independent recombination betwween repeated sequences in the radioresistant Deinococcus radiodurans bacterium, PLoS Genet, vol.11, p.1005636, 2015. ,
Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance?, Science, vol.299, pp.254-256, 2003. ,
A comparative proteomic approach to better define Deinococcus nucleoid specificities, J Proteomics, vol.75, pp.2588-2600, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00757315
DNA topoisomerases: structure, function, and mechanism, Annu Rev Biochem, vol.70, pp.369-413, 2001. ,
The bacterial chromosome: architecture and action of bacterial SMC and SMC-like complexes, FEMS Microbiol Rev, vol.38, pp.380-392, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01893655
The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli, EMBO J, vol.10, pp.183-193, 1991. ,
Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I, Proc Natl Acad Sci, vol.97, pp.1671-1676, 2000. ,
MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves, Mol Microbiol, vol.65, pp.1485-1492, 2007. ,
A Bacillus subtilis geneencoding protein homologous to eukaryotic SMC motor protein is necessary for chromosome partition, Mol Microbiol, vol.29, pp.179-187, 1998. ,
Subcellular localization of the Bacillus subtilis structural maintenance of chromosomes (SMC) protein, Mol Microbiol, vol.46, pp.997-1009, 2002. ,
DNA compaction in the early part of the SOS response is dependent on RecN and RecA, Microbiology, vol.160, pp.872-882, 2014. ,
Management of E. coli sister chromatid cohesion in response to genotoxic stress, Nat Commun, vol.8, p.14618, 2017. ,
URL : https://hal.archives-ouvertes.fr/tel-01827812
Direct Evidence for the Formation of Precatenanes during DNA Replication, J Biol Chem, vol.290, pp.13725-13735, 2015. ,
Identification of a DNA processing complex from Deinococcus radiodurans, Biochem Cell Biol, vol.86, pp.448-458, 2008. ,
Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans, Mol Genet Genomics, vol.272, pp.460-469, 2004. ,
The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones, PLoS One, vol.8, p.56558, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00800853
The essential histonelike protein HU plays a major role in Deinococcus radiodurans nucleoid compaction, Mol Microbiol, vol.73, pp.240-252, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00529821
Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1, PLoS Biol, vol.2, p.304, 2004. ,
Involvement of an X family DNA polymerase in double-stranded break repair in the radioresistant organism Deinococcus radiodurans, Mol Microbiol, vol.53, 2004. ,
Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator, Mol Microbiol, vol.70, pp.60-75, 2008. ,
Identification of novel genes regulated by the oxidative stress-responsive transcriptional activator SdrP in Thermus thermophilus HB8, FEMS Microbiol Lett, vol.313, pp.127-161, 2010. ,
cAMP signaling in Mycobacterium tuberculosis, Indian J Exp Biol, vol.47, pp.393-400, 2009. ,
Autoregulation of the Escherichia coli crp gene: CRP is a transcriptional repressor for its own gene, Cell, vol.32, pp.141-150, 1983. ,
Novel biochemical properties of a CRP/FNR family transcription factor from Mycobacterium tuberculosis, Int J Med Microbiol, vol.297, pp.451-458, 2007. ,
Genome scale portrait of cAMP-receptor protein (CRP) regulons in mycobacteria points to their role in pathogenesis, Gene, vol.407, pp.148-58, 2008. ,
Vfr controls quorum sensing in Pseudomonas aeruginosa, J Bacteriol, vol.179, pp.3928-3963, 1997. ,
In vitro reconstitution of the Schizosaccharomyces pombe alternative excision repair pathway, Biochemistry, vol.39, pp.2659-66, 2000. ,
A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli, Genes Dev, vol.6, pp.2646-54, 1992. ,
Studies on a radioresistant micrococcus. I. Isolation, morphology, cultural characteristics, and resistance to gamma radiation, Food Technol, vol.10, pp.575-578, 1956. ,
YeiL, the third member of the CRP-FNR family in Escherichia coli, Microbiology 146 Pt, vol.12, pp.3157-70, 2000. ,
A novel heme protein that acts as a carbon monoxide-dependent transcriptional activator in Rhodospirillum rubrum, Biochem Biophys Res Commun, vol.228, pp.752-758, 1996. ,
The Crp regulator of Pseudomonas putida: evidence of an unusually high affinity for its physiological effector, cAMP, Environ Microbiol, vol.14, pp.702-715, 2012. ,
Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity, J Biol Chem, vol.274, pp.33105-33118, 1999. ,
In vivo architecture and action of bacterial structural maintenance of chromosome proteins, Science, vol.338, pp.528-559, 2012. ,
Characterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a cyclic AMP receptor protein-like DNA binding protein, J Bacteriol, vol.187, pp.7795-804, 2005. ,
cAMP levels within Mycobacterium tuberculosis and Mycobacterium bovis BCG increase upon infection of macrophages, FEMS Immunol Med Microbiol, vol.55, pp.68-73, 2009. ,
Dysregulation of serine biosynthesis contributes to the growth defect of a Mycobacterium tuberculosis crp mutant, Mol Microbiol, vol.82, pp.180-98, 2011. ,
The sodium cycle. III. Vibrio alginolyticus resembles Vibrio cholerae and some other vibriones by flagellar motor and ribosomal 5S-RNA structures, Biochim Biophys Acta, vol.850, pp.466-72, 1986. ,
Gamma radiation-induced proteome of Deinococcus radiodurans primarily targets DNA repair and oxidative stress alleviation, Mol Cell Proteomics, vol.11, 2012. ,
Against all odds: the survival strategies of Deinococcus radiodurans, Annu Rev Microbiol, vol.51, pp.203-227, 1997. ,
fixK, a gene homologous with fnr and crp from Escherichia coli, regulates nitrogen fixation genes both positively and negatively in Rhizobium meliloti, EMBO J, vol.8, pp.1279-86, 1989. ,
Differential regulation of twitching motility and elastase production by Vfr in Pseudomonas aeruginosa, J Bacteriol, vol.184, pp.3605-3618, 2002. ,
Cyclic AMP receptor protein-dependent activation of the Escherichia coli acsP2 promoter by a synergistic class III mechanism, J Bacteriol, vol.185, pp.5148-57, 2003. ,
O2 as the regulatory signal for FNR-dependent gene regulation in Escherichia coli, J Bacteriol, vol.178, pp.4515-4536, 1996. ,
Dunaliella bardawil can survive especially high irradiance levels by the accumulation of beta-carotene, Trends Biotechnol, vol.8, pp.121-126, 1990. ,
RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli, EMBO J, vol.28, pp.193-204, 2009. ,
Additive effects of SbcCD and PolX deficiencies in the in vivo repair of DNA double-strand breaks in Deinococcus radiodurans, J Bacteriol, vol.189, pp.4784-90, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00195312
A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans, PLoS Genet, vol.6, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00506306
, , 1982.
, J Radiol, vol.64, pp.515-524
The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes, J Biol Chem, vol.271, pp.25059-62, 1996. ,
Correlation between growth rates, EIIACrr phosphorylation, and intracellular cyclic AMP levels in Escherichia coli K-12, J Bacteriol, vol.189, pp.6891-900, 2007. ,
The N-terminal extensions of Deinococcus radiodurans Dps-1 mediate DNA major groove interactions as well as assembly of the dodecamer, J Biol Chem, vol.282, pp.11921-11951, 2007. ,
Conservation and diversity of the IrrE/DdrOcontrolled radiation response in radiation-resistant Deinococcus bacteria, 2017. ,
DNA polymerase X from Deinococcus radiodurans possesses a structure-modulated 3'-->5' exonuclease activity involved in radioresistance, Mol Microbiol, vol.60, pp.165-76, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00100337
The complete genome sequence of Escherichia coli K-12, Science, vol.277, pp.1453-62, 1997. ,
Chitin colonization, chitin degradation and chitin-induced natural competence of Vibrio cholerae are subject to catabolite repression, Environ Microbiol, vol.14, pp.1898-912, 2012. ,
Quantification of RecA protein in Deinococcus radiodurans reveals involvement of RecA, but not LexA, in its regulation, Mol Genet Genomics, vol.268, pp.28-41, 2002. ,
Cyclic AMP in prokaryotes, Microbiol Rev, vol.56, pp.100-122, 1992. ,
The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity, DNA Repair (Amst), vol.10, pp.1223-1254, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00764859
In vivo and in vitro characterization of DdrC, a DNA damage response protein in Deinococcus radiodurans bacterium, PLoS One, vol.12, p.177751, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02187767
The Deinococcus radiodurans SMC protein is dispensable for cell viability yet plays a role in DNA folding, Extremophiles, vol.13, pp.827-864, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00527433
Repairing DNA double-strand breaks by the prokaryotic non-homologous end-joining pathway, Biochem Soc Trans, vol.37, pp.539-584, 2009. ,
Synthetic lethal phenotypes caused by mutations affecting chromosome partitioning in Bacillus subtilis, J Bacteriol, vol.181, pp.5860-5864, 1999. ,
Characterization of a prokaryotic SMC protein involved in chromosome partitioning, Genes Dev, vol.12, pp.1254-1263, 1998. ,
Nomenclature for "Micrococcus radiodurans" and other radiationresistant cocci: Deinococcaceae fam. nov. Deinococcus gen. nov., including five species, Int J syst Bacteriol, vol.31, pp.353-360, 1981. ,
Structure and mechanism of action of type IA DNA topoisomerases, Biochemistry (Mosc), vol.74, pp.1467-81, 2009. ,
Transcription activation by catabolite activator protein (CAP), J Mol Biol, vol.293, pp.199-213, 1999. ,
The bacterial LexA transcriptional repressor, Cell Mol Life Sci, vol.66, pp.82-93, 2009. ,
Description of four novel psychrophilic, ionizing radiation-sensitive Deinococcus species from alpine environments, Int J Syst Evol Microbiol, vol.58, pp.1252-1260, 2008. ,
Design principles of the proteolytic cascade governing the sigmaE-mediated envelope stress response in Escherichia coli: keys to graded, buffered, and rapid signal transduction, Genes Dev, vol.21, pp.124-160, 2007. ,
Signalling mechanisms in Mycobacteria, Tuberculosis (Edinb), vol.91, pp.432-472, 2011. ,
Escherichia coli sbcC mutants permit stable propagation of DNA replicons containing a long palindrome, Gene, vol.71, pp.201-206, 1988. ,
DNA topoisomerases: structure, function, and mechanism, Annuv Rev Biochem, vol.70, pp.369-413, 2001. ,
The gene encoding cAMP receptor protein is required for competence development in Haemophilus influenzae Rd, Proc Natl Acad Sci, vol.89, pp.1626-1656, 1992. ,
Functional characterization of the role of the chromosome I partitioning system in genome segregation in Deinococcus radiodurans, J Bacteriol, vol.194, pp.5739-5787, 2012. ,
Two nonconsensus Clp binding sites are involved in upregulation of the gum operon involved in xanthan polysaccharide synthesis in Xanthomonas campestris pv. campestris, Res Microbiol, vol.161, pp.583-592, 2010. ,
DR2539 is a novel DtxR-like regulator of Mn/Fe ion homeostasis and antioxidant enzyme in Deinococcus radiodurans, Biochem Biophys Res Commun, vol.396, pp.413-421, 2010. ,
A novel OxyR sensor and regulator of hydrogen peroxide stress with one cysteine residue in Deinococcus radiodurans, PLoS One, vol.3, p.1602, 2008. ,
Toxic Effect of Manganese on Growth and Sporulation of Bacillus stearothermophilus, Journal of general microbiology, vol.128, issue.10, pp.2395-2402, 1982. ,
The cAMP receptorlike protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris, J Mol Biol, vol.396, pp.646-62, 2010. ,
New regulatory gene that contributes to control of Bacteroides thetaiotaomicron starch utilization genes, J Bacteriol, vol.183, pp.7198-205, 2001. ,
Salt-mediated multicell formation in Deinococcus radiodurans, J Bacteriol, vol.173, pp.3184-90, 1991. ,
Delicate conformational changes of a protein in the CRP family lead to dramatic functional changes via binding of an alternate secondary messenger molecule, Virulence, vol.2, pp.152-159, 2011. ,
DNA cleavage and degradation by the SbcCD protein complex from Escherichia coli, Nucleic Acids Res, vol.27, pp.1039-1085, 1999. ,
The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA, Proc Natl Acad Sci U S A, vol.95, pp.7969-74, 1998. ,
The sbcC and sbcD genes of Escherichia coli encode a nuclease involved in palindrome inviability and genetic recombination, Genes Cells, vol.1, pp.285-91, 1996. ,
Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli, PLoS Genet, vol.4, p.35, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00266850
Comparative gene expression profiles following UV exposure in wild-type and SOSdeficient Escherichia coli, Genetics, vol.158, pp.41-64, 2001. ,
Deinococcus radiodurans -the consummate survivor, Nat Rev Microbiol, vol.3, pp.882-92, 2005. ,
Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements, Genes Dev, vol.14, pp.2881-92, 2000. ,
topoIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB, Nucleic Acids Res, vol.44, pp.2795-805, 2016. ,
A new perspective on radiation resistance based on Deinococcus radiodurans, Nat Rev Microbiol, vol.7, pp.237-282, 2009. ,
Death by protein damage in irradiated cells, DNA Repair (Amst), vol.11, pp.12-21, 2012. ,
Smallmolecule antioxidant proteome-shields in Deinococcus radiodurans, PLoS One, vol.5, 2010. ,
Protein oxidation implicated as the primary determinant of bacterial radioresistance, PLoS Biol, vol.5, p.92, 2007. ,
Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance, Science, vol.306, pp.1025-1033, 2004. ,
An alternative pathway of recombination of chromosomal fragments precedes recA-dependent recombination in the radioresistant bacterium Deinococcus radiodurans, J Bacteriol, vol.178, pp.4461-71, 1996. ,
MukB colocalizes with the oriC region and is required for organization of the two Escherichia coli chromosome arms into separate cell halves, Mol Microbiol, vol.65, pp.1485-92, 2007. ,
A novel class of heat and secretion stress-responsive genes is controlled by the autoregulated CssRS two-component system of Bacillus subtilis, J Bacteriol, vol.184, pp.5661-71, 2002. ,
Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert, Int J Syst Evol Microbiol, vol.55, pp.2441-2447, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00079616
Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti, PLoS Genet, vol.5, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00459812
Comparative proteomics reveals key proteins recruited at the nucleoid of Deinococcus after irradiation-induced DNA damage, Proteomics, vol.13, pp.3457-69, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-02014014
Deletion of a cyclic AMP receptor protein homologue diminishes germination and affects morphological development of Streptomyces coelicolor, J Bacteriol, vol.186, pp.1893-1900, 2004. ,
The CtsR regulator of stress response is active as a dimer and specifically degraded in vivo at 37 degrees C, Mol Microbiol, vol.38, pp.335-382, 2000. ,
Characterization of the role of the RadS/RadR two-component system in the radiation resistance of Deinococcus radiodurans, Microbiology, vol.157, pp.2974-82, 2011. ,
Trigger factor and DnaK cooperate in folding of newly synthesized proteins, Nature, vol.400, pp.693-699, 1999. ,
The mechanisms of carbon catabolite repression in bacteria, Curr Opin Microbiol, vol.11, pp.87-93, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00315464
PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01412363
DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in the radioresistant Deinococcus radiodurans bacterium, Mol Microbiol, vol.96, pp.1069-84, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01464823
The PprA protein is required for accurate cell division of gamma-irradiated Deinococcus radiodurans bacteria, DNA Repair (Amst), vol.12, pp.265-72, 2013. ,
Molecular cloning and DNA sequence analysis of Escherichia coli topB, the gene encoding topoisomerase III, J Biol Chem, vol.264, pp.17924-17954, 1989. ,
RecBCD enzyme and the repair of double-stranded DNA breaks, Microbiol Mol Biol Rev, vol.72, pp.642-71, 2008. ,
Repair of extensive ionizing-radiation DNA damage at 95 degrees C in the hyperthermophilic archaeon Pyrococcus furiosus, J Bacteriol, vol.179, pp.4643-4648, 1997. ,
Survival in extreme dryness and DNA-single-strand breaks, Adv Space Rev, vol.12, pp.221-230, 1992. ,
Histonelike proteins of bacteria, Microbiol Rev, vol.51, pp.301-320, 1987. ,
DNA gyrase, topoisomerase IV, and the 4-quinolones, Microbiol Mol Biol Rev, vol.61, pp.377-92, 1997. ,
The problem of hypernegative supercoiling and R-loop formation in transcription, Front Biosci, vol.8, pp.210-231, 2003. ,
N-Acetyltransferase Mpr1 confers ethanol tolerance on Saccharomyces cerevisiae by reducing reactive oxygen species, Appl Microbiol Biotechnol, vol.75, pp.1343-51, 2007. ,
Interactions between a Bacillus subtilis antisigma factor (RsbW) and its antagonist (RsbV), J Bacteriol, vol.176, pp.1813-1833, 1994. ,
Identification of new genes contributing to the extreme radioresistance of Deinococcus radiodurans using a Tn5-based transposon mutant library, PLoS One, vol.10, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01464760
Small RNA-mediated regulation in bacteria: A growing palette of diverse mechanisms, Gene, vol.656, pp.60-72, 2018. ,
The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression, J Bacteriol, vol.184, pp.6216-6240, 2002. ,
Genetic evidence that the uvsE gene product of Deinococcus radiodurans R1 is a UV damage endonuclease, J Bacteriol, vol.184, pp.1003-1012, 2002. ,
CtsR inactivation during thiol-specific stress in low GC, Gram+ bacteria, Mol Microbiol, vol.79, pp.772-85, 2011. ,
DOI : 10.1111/j.1365-2958.2010.07489.x
A physical and functional interaction between Escherichia coli FtsK and topoisomerase IV, J Biol Chem, vol.278, pp.44639-44683, 2003. ,
Untangling intracellular DNA topology, Mol Microbiol, vol.52, pp.925-956, 2004. ,
DOI : 10.1111/j.1365-2958.2004.04047.x
URL : https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2958.2004.04047.x
Streptococcus pneumoniae DivIVA: localization and interactions in a MinCD-free context, J Bacteriol, vol.189, pp.1288-98, 2007. ,
DOI : 10.1128/jb.01168-06
URL : https://jb.asm.org/content/189/4/1288.full.pdf
The MukF subunit of Escherichia coli condensin: architecture and functional relationship to kleisins, EMBO J, vol.24, pp.1921-1951, 2005. ,
Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs, Int J Syst Bacteriol, vol.47, pp.939-986, 1997. ,
Identification of the Escherichia coli recN gene product as a major SOS protein, J Bacteriol, vol.164, pp.653-661, 1985. ,
Genetic regulation of nitrogen fixation in rhizobia, Microbiol Rev, vol.58, pp.352-86, 1994. ,
A dynamic, mitotic-like mechanism for bacterial chromosome segregation, Genes Dev, vol.20, pp.3269-82, 2006. ,
DOI : 10.1101/gad.1496506
URL : http://genesdev.cshlp.org/content/20/23/3269.full.pdf
Interplay between cyclic AMP-cyclic AMP receptor protein and cyclic di-GMP signaling in Vibrio cholerae biofilm formation, J Bacteriol, vol.190, pp.6646-59, 2008. ,
DOI : 10.1128/jb.00466-08
URL : https://jb.asm.org/content/190/20/6646.full.pdf
Nucleoid restructuring in stationary-state bacteria, Mol Microbiol, vol.51, pp.395-405, 2004. ,
DOI : 10.1046/j.1365-2958.2003.03855.x
URL : https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2958.2003.03855.x
The Pseudomonas aeruginosa Vfr regulator controls global virulence factor expression through cyclic AMP-dependent and -independent mechanisms, J Bacteriol, vol.192, pp.3553-64, 2010. ,
DOI : 10.1128/jb.00363-10
URL : https://jb.asm.org/content/192/14/3553.full.pdf
McsB is a protein arginine kinase that phosphorylates and inhibits the heat-shock regulator CtsR, Science, vol.324, pp.1323-1330, 2009. ,
Identification and disruption analysis of the recN gene in the extremely radioresistant bacterium Deinococcus radiodurans, Mutat Res, vol.435, pp.151-61, 1999. ,
Profound asymmetry in the structure of the cAMP-free cAMP Receptor Protein (CRP) from Mycobacterium tuberculosis, J Biol Chem, vol.284, pp.8228-8260, 2009. ,
Biological roles of cAMP: variations on a theme in the different kingdoms of life, Biol Rev Camb Philos Soc, vol.88, pp.645-68, 2013. ,
Crp is a global regulator of antibiotic production in streptomyces, MBio, vol.3, 2012. ,
Internal promoter characterization and expression of the Deinococcus radiodurans pprI-folP gene cluster, FEMS Microbiol Lett, vol.257, pp.195-201, 2006. ,
DOI : 10.1111/j.1574-6968.2006.00169.x
URL : https://academic.oup.com/femsle/article-pdf/257/2/195/19123096/257-2-195.pdf
Regulation of DNA supercoiling in Escherichia coli, Cold Spring Harb Symp Quant Bio 47 Pt, vol.2, pp.763-770, 1983. ,
DNA gyrase: an enzyme that introduces superhelical turns into DNA, Proc Natl Acad Sci U S A, vol.73, pp.3872-3878, 1976. ,
cAMP receptor protein (CRP)-mediated resistance/tolerance in bacteria: mechanism and utilization in biotechnology, Appl Microbiol Biotechnol, vol.99, pp.4533-4576, 2015. ,
DNA protection mechanisms are not involved in the radioresistance of the hyperthermophilic archaea Pyrococcus abyssi and P. furiosus, Mol Genet Genomics, vol.266, pp.72-80, 2001. ,
How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress, FEMS Microbiol Rev, vol.29, pp.361-75, 2005. ,
Lipid hydroperoxide generation, turnover, and effector action in biological systems, J Lipid Res, vol.39, pp.1529-1571, 1998. ,
Extreme resistance of bdelloid rotifers to ionizing radiation, Proc Natl Acad Sci U S A, vol.105, pp.5139-5183, 2008. ,
Structure of the manganese-bound manganese transport regulator of Bacillus subtilis, Nat Struct Biol, vol.10, pp.652-659, 2003. ,
Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C, Nat Struct Mol Biol, vol.12, pp.304-316, 2005. ,
Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli, J Bacteriol, vol.186, pp.3516-3540, 2004. ,
A novel regulatory switch mediated by the FNR-like protein of Lactobacillus casei, Microbiology, vol.144, pp.705-722, 1998. ,
Two operons that encode FNR-like proteins in Lactococcus lactis, Mol Microbiol, vol.31, pp.1523-1558, 1999. ,
Bacterial small RNA regulators: versatile roles and rapidly evolving variations, Cold Spring Harb Perspect Biol, vol.3, 2011. ,
Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome, Proc Natl Acad Sci U S A, vol.102, pp.17693-17701, 2005. ,
Bacillus subtilis SMC is required for proper arrangement of the chromosome and for efficient segregation of replication termini but not for bipolar movement of newly duplicated origin regions, J Bacteriol, vol.182, pp.6463-71, 2000. ,
Dynamics of the bacterial SMC complex and SMClike proteins involved in DNA repair, Chromosome Res, vol.17, pp.265-75, 2009. ,
Subcellular localization of Bacillus subtilis SMC, a protein involved in chromosome condensation and segregation, J Bacteriol, vol.180, pp.5749-55, 1998. ,
A superfamily of proteins that contain the cold-shock domain, Trends Biochem Sci, vol.23, pp.286-90, 1998. ,
Cyclic-AMP and bacterial cyclic-AMP receptor proteins revisited: adaptation for different ecological niches, Curr Opin Microbiol, vol.18, pp.1-7, 2014. ,
Emendation of Methylobacterium Patt, Cole, and Hanson 1976; Methylobacterium rhodinum (Heumann 1962) comb. nov. corrig.; Methylobacterium radiotolerans (Ito and Iizuka 1971) comb. nov. corrig.; and Methylobacterium mesophilicum (Austin and Goodfellow 1979) comb. nov, Int. J. Syst. Bacteriol, vol.33, pp.875-877, 1983. ,
Distinctive protein signatures provide molecular markers and evidence for the monophyletic nature of the deinococcus-thermus phylum, J Bacteriol, vol.186, pp.3097-107, 2004. ,
Identification of signature proteins that are distinctive of the Deinococcus-Thermus phylum, Int Microbiol, vol.10, pp.201-209, 2007. ,
Mutations in the cyclic AMP binding site of the cyclic AMP receptor protein of Escherichia coli, Biochem J, vol.253, pp.801-808, 1988. ,
Chromosomal cohesin forms a ring, Cell, vol.112, pp.765-77, 2003. ,
A chaperone network controls the heat shock response in E. coli, Genes Dev, vol.18, pp.2812-2833, 2004. ,
Signature sequences in diverse proteins provide evidence of a close evolutionary relationship between the Deinococcus-thermus group and cyanobacteria, J Mol Evol, vol.46, pp.716-736, 1998. ,
Sequencing, targeted mutagenesis and expression of a recA gene required for the extreme radioresistance of Deinococcus radiodurans, Gene, vol.141, pp.31-38, 1994. ,
, Free radicals in biology and medicine, 1999.
Multiplicity of genome equivalents in the radiation-resistant bacterium Micrococcus radiodurans, J Bacteriol, vol.134, pp.71-76, 1978. ,
Allosteric regulation of the cAMP receptor protein, Biochim Biophys Acta, vol.1547, pp.1-17, 2001. ,
RecQ helicase and topoisomerase III comprise a novel DNA strand passage function: a conserved mechanism for control of DNA recombination, Mol cell, vol.3, pp.611-631, 1999. ,
Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1, PLoS Biol, vol.2, p.304, 2004. ,
Genome multiplicity and radiation resistance in Micrococcus radiodurans, J Biochem, vol.90, pp.877-80, 1981. ,
, , 2011.
Physical and functional interaction between the condensin MukB and the decatenase topoisomerase IV in Escherichia coli, C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli, vol.7, pp.18826-18857, 2010. ,
Characterization of a COresponsive transcriptional activator from Rhodospirillum rubrum, J Biol Chem, vol.271, pp.120-123, 1996. ,
Involvement of the global Crp regulator in cyclic AMP-dependent utilization of aromatic amino acids by Pseudomonas putida, J Bacteriol, vol.194, pp.406-418, 2012. ,
Nitrogen control in cyanobacteria, J Bacteriol, vol.183, pp.411-436, 2001. ,
Two distinct modes of strand unlinking during theta-type DNA replication, J Biol Chem, vol.271, pp.21529-21564, 1996. ,
Accumulation of altered proteins and ageing: causes and effects, Exp Gerontol, vol.41, pp.464-73, 2006. ,
Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells, J Bacteriol, vol.171, pp.1496-505, 1989. ,
Bimodal activation of SMC ATPase by intra-and inter-molecular interactions, EMBO J, vol.20, pp.3238-50, 2001. ,
Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA, EMBO J, vol.21, pp.5733-5777, 2002. ,
Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica, Syst Appl Microbiol, vol.27, pp.636-681, 2004. ,
How relevant is the Escherichia coli UvrABC model for excision repair in eukaryotes?, J Cell Sci, vol.100, pp.687-91, 1991. ,
The Induction of Mitotic Recombination by Mitomycin C in Ustilago and Saccharomyces, Genetics, vol.50, pp.323-358, 1964. ,
The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair, Nature, vol.418, pp.562-568, 2002. ,
Structural biochemistry and interaction architecture of the DNA double-strand break repair Mre11 nuclease and Rad50-ATPase, Cell, vol.105, pp.473-85, 2001. ,
Genetic analysis of the recF pathway to genetic recombination in Escherichia coli K12: isolation and characterization of mutants, J Mol Biol, vol.80, pp.327-371, 1973. ,
High hydrostatic pressure tolerance of four different anhydrobiotic animal species, Zoolog Sci, vol.26, pp.238-280, 2009. ,
Structure of the topoisomerase IV C-terminal domain: a broken beta-propeller implies a role as geometry facilitator in catalysis, J Biol Chem, vol.279, pp.55587-93, 2004. ,
Thermodynamic properties of superhelical DNAs, Biochemistry, vol.14, pp.527-562, 1975. ,
Characteristics of nuclease activity of the SbcCD complex from Deinococcus radiodurans, J Biochem, vol.147, pp.307-322, 2010. ,
Improved Complete Genome Sequence of the Extremely Radioresistant Bacterium Deinococcus radiodurans R1 Obtained Using PacBio Single-Molecule Sequencing, Genome Announc, vol.4, 2016. ,
PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans, Biochem Biophys Res Commun, vol.306, pp.354-60, 2003. ,
The nitric oxide regulated nor promoter of Paracoccus denitrificans, Microbiology, vol.146, pp.2635-2676, 2000. ,
A novel two-component regulatory system in Bacillus subtilis for the survival of severe secretion stress, Mol Microbiol, vol.41, pp.1159-72, 2001. ,
Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents, Bioprocess Biosyst Eng, vol.36, pp.781-790, 2012. ,
Global analysis of photosynthesis transcriptional regulatory networks, PLoS Genet, vol.10, 2014. ,
Iron-sulphur clusters and the problem with oxygen, Mol Microbiol, vol.59, pp.1073-82, 2006. ,
spo0J is required for normal chromosome segregation as well as the initiation of sporulation in Bacillus subtilis, J Bacteriol, vol.176, pp.5320-5329, 1994. ,
PprM is necessary for up-regulation of katE1, encoding the major catalase of Deinococcus radiodurans, under unstressed culture conditions, J Microbiol, vol.54, pp.426-457, 2016. ,
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes, Cell, vol.110, pp.551-61, 2002. ,
Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation, Int J Syst Evol Microbiol, vol.53, pp.847-51, 2003. ,
Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1, Mol Microbiol, vol.59, pp.338-387, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00079723
FNR is a direct oxygen sensor having a biphasic response curve, FEBS Lett, vol.416, pp.349-52, 1997. ,
EzrA contributes to the regulation of cell size in Staphylococcus aureus, PLoS One, vol.6, p.27542, 2011. ,
Prokaryotic DNA mismatch repair, Prog Nucleic Acid Res Mol Biol, vol.81, pp.1-49, 2006. ,
Protein recycling is a major component of post-irradiation recovery in Deinococcus radiodurans strain R1, Biochem Biophys Res Commun, vol.320, pp.1112-1119, 2004. ,
SpoIIIE and a novel type of DNA translocase, SftA, couple chromosome segregation with cell division in Bacillus subtilis, Mol Microbiol, vol.74, pp.810-835, 2009. ,
Two DNA translocases synergistically affect chromosome dimer resolution in Bacillus subtilis, J Bacteriol, vol.193, pp.1334-1374, 2011. ,
Increased synthesis of signaling molecules coincides with reversible inhibition of nucleolytic activity during postirradiation recovery of Deinococcus radiodurans, FEMS Microbiol Lett, vol.303, pp.18-25, 2010. ,
Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNAbinding protein: A common step in genetic recombination, Proc Natl Acad Sci U S A, vol.99, pp.15327-15359, 2002. ,
RecA protein recruits structural maintenance of chromosomes (SMC)-like RecN protein to DNA double-strand breaks, J Biol Chem, vol.288, pp.29229-29266, 2013. ,
Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays, Proc NatI Acad Sci, vol.97, pp.9419-9443, 2000. ,
Visualization of DNA double-strand break repair in live bacteria reveals dynamic recruitment of Bacillus subtilis RecF, RecO and RecN proteins to distinct sites on the nucleoids, Mol Microbiol, vol.52, pp.1627-1666, 2004. ,
Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster, FEMS Microbiol Rev, vol.22, pp.341-52, 1998. ,
Fnr mutants that activate gene expression in the presence of oxygen, J Bacteriol, vol.173, pp.16-22, 1991. ,
Identification and characterization of glxR, a gene involved in regulation of glyoxylate bypass in Corynebacterium glutamicum, J Bacteriol, vol.186, pp.3453-60, 2004. ,
Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy, Nucleic Acids Res, vol.32, pp.1982-92, 2004. ,
Bacterial DNA topoisomerase I can relax positively supercoiled DNA containing a single-stranded loop, J Mol Biol, vol.185, pp.625-662, 1985. ,
The tyrosine kinase McsB is a regulated adaptor protein for ClpCP, EMBO J, vol.26, pp.2061-70, 2007. ,
Two steps away from novelty--principles of bacterial DNA uptake, Mol Microbiol, vol.80, pp.860-867, 2011. ,
Mapping conformational transitions in cyclic AMP receptor protein: crystal structure and normal-mode analysis of Mycobacterium tuberculosis apo-cAMP receptor protein, Biophys J, vol.98, pp.305-319, 2010. ,
Requirement of nitric oxide for induction of genes whose products are involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3, J Biol Chem, vol.271, pp.24382-24390, 1996. ,
Structural biochemistry of ATP-driven dimerization and DNA-stimulated activation of SMC ATPases, Curr Biol, vol.14, pp.1778-82, 2004. ,
Catabolite activator protein: DNA binding and transcription activation, Curr Opin Struct Biol, vol.14, pp.10-20, 2004. ,
DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen, J Biol Chem, vol.271, pp.2762-2770, 1996. ,
Repair by recombination of DNA containing a palindromic sequence, Mol Microbiol, vol.26, pp.597-606, 1997. ,
Viability of lambda phages carrying a perfect palindrome in the absence of recombination nucleases, Nature, vol.305, pp.448-51, 1983. ,
Repair of double-strand breaks and lethal damage in DNA of Ustilago maydis, Genet Res, vol.35, pp.291-307, 1980. ,
Vectors for regulated gene expression in the radioresistant bacterium Deinococcus radiodurans, Gene, vol.336, pp.25-35, 2004. ,
Redox regulation of OxyR requires specific disulfide bond formation involving a rapid kinetic reaction path, Nat Struct Mol Biol, vol.11, pp.1179-85, 2004. ,
Mutagenesis of the cyclic AMP receptor protein of Escherichia coli: targeting positions 83, 127 and 128 of the cyclic nucleotide binding pocket, Nucleic Acids Res, vol.22, pp.2894-901, 1994. ,
The chromosome partitioning proteins Soj (ParA) and Spo0J (ParB) contribute to accurate chromosome partitioning, separation of replicated sister origins, and regulation of replication initiation in Bacillus subtilis, Mol Microbiol, vol.60, pp.853-69, 2006. ,
The in vivo association of manganese with the chromosome of Micrococcus radiodurans, Photochem Photobiol, vol.23, pp.45-50, 1976. ,
Deinoxanthin: a new carotenoid isolated from Deinococcus radiodurans, Tetrahedron, vol.53, pp.919-926, 1997. ,
URL : https://hal.archives-ouvertes.fr/hal-00155200
, Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance, vol.299, pp.254-260, 2003.
Modulation of allosteric behavior through adjustment of the differential stability of the two interacting domains in E. coli cAMP receptor protein, Biophys Chem, vol.159, pp.210-216, 2011. ,
RNA-Binding Domain is Necessary for PprM Function in Response to the Extreme Environmental Stress in Deinococcus radiodurans, Indian J Microbiol, vol.57, pp.492-498, 2017. ,
The cyclic AMP receptor protein modulates quorum sensing, motility and multiple genes that affect intestinal colonization in Vibrio cholerae, Microbiology, vol.153, pp.2964-75, 2007. ,
Identification and characterization of a bacterial chromosome partitioning site, Cell, vol.92, pp.675-85, 1998. ,
Structural maintenance of chromosomes protein of Bacillus subtilis affects supercoiling in vivo, J Bacteriol, vol.184, pp.5317-5339, 2002. ,
SurR: a transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus, Mol Microbiol, vol.71, pp.332-381, 2009. ,
The SOS regulatory system of Escherichia coli, Cell, vol.29, pp.11-22, 1982. ,
A PerR-like protein involved in response to oxidative stress in the extreme bacterium Deinococcus radiodurans, Biochem Biophys Res Commun, vol.450, pp.575-80, 2014. ,
Supercoiling of the DNA template during transcription, Proc Natl Acad Sci U S A, vol.84, pp.7024-7031, 1987. ,
The structural basis of the response regulator DrRRA from Deinococcus radiodurans, Biochem Biophys Res Commun, vol.417, pp.1206-1218, 2012. ,
, Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation, vol.100, pp.4191-4197, 2003.
Identification and genetic analysis of sbcC mutations in commonly used recBC sbcB strains of Escherichia coli K-12, J Bacteriol, vol.164, pp.836-880, 1985. ,
Inducible expression of a gene specific to the RecF pathway for recombination in Escherichia coli K12, Mol Gen Genet, vol.190, pp.162-169, 1983. ,
Deinococcus radiodurans PriA is a Pseudohelicase, PLoS One, vol.10, p.133419, 2015. ,
Characterization of the role of DR0171 in transcriptional response to radiation in the extremely radioresistant bacterium Deinococcus radiodurans, Arch Microbiol, vol.193, pp.741-50, 2011. ,
RsmA regulates biofilm formation in Xanthomonas campestris through a regulatory network involving cyclic di-GMP and the Clp transcription factor, PLoS One, vol.7, 2012. ,
, Genome-wide transcriptome and antioxidant analyses on gammairradiated phases of Deinococcus radiodurans R1, vol.9, p.85649, 2014.
Radiation response in Deinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO, Mol Microbiol, vol.94, pp.434-483, 2014. ,
Molecular mechanism for the operation of nitrogen control in cyanobacteria, EMBO J, vol.13, pp.2862-2871, 1994. ,
Assembly dynamics of the bacterial MinCDE system and spatial regulation of the Z ring, Annu Rev Biochem, vol.76, pp.539-62, 2007. ,
Regulation of anaerobic arginine catabolism in Bacillus licheniformis by a protein of the Crp/Fnr family, FEMS Microbiol Lett, vol.191, pp.227-261, 2000. ,
Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics, Microbiol Mol Biol Rev, vol.65, pp.44-79, 2001. ,
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks, PLoS One, vol.2, p.955, 2007. ,
A novel structure of DNA repair protein RecO from Deinococcus radiodurans, Structure, vol.12, pp.1881-1890, 2004. ,
, , 2011.
, Cyclic GMP controls Rhodospirillum centenum cyst development. Mol Microbiol, vol.79, pp.600-615
Targeted mutagenesis by duplication insertion in the radioresistant bacterium Deinococcus radiodurans: radiation sensitivities of catalase (katA) and superoxide dismutase (sodA) mutants, J Bacteriol, vol.181, pp.666-675, 1999. ,
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System, J Bacteriol, vol.198, pp.1442-50, 2016. ,
Identifying global regulators in transcriptional regulatory networks in bacteria, Curr Opin Microbiol, vol.6, pp.482-491, 2003. ,
Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps, J Bacteriol, vol.179, pp.5188-94, 1997. ,
Bacillus subtilis SbcC protein plays an important role in DNA inter-strand cross-link repair, BMC Mol Biol, vol.7, p.20, 2006. ,
Cell cycledependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein, EMBO J, vol.21, pp.3108-3126, 2002. ,
Dynamic assembly, localization and proteolysis of the Bacillus subtilis SMC complex, BMC Cell Biol, vol.6, p.28, 2005. ,
Comparison of MukB homodimer versus MukBEF complex molecular architectures by electron microscopy reveals a higher-order multimerization, Biochem Biophys Res Commun, vol.333, pp.694-702, 2005. ,
Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation, J Bacteriol, vol.178, pp.633-640, 1996. ,
Divisome and segrosome components of Deinococcus radiodurans interact through cell division regulatory proteins, Microbiology, vol.162, pp.1321-1355, 2016. ,
Branch migration prevents DNA loss during doublestrand break repair, PLoS Genet, vol.10, 2014. ,
Repair of UV damage in the fission yeast Schizosaccharomyces pombe, Mutat Res, vol.451, pp.197-210, 2000. ,
Structure of catabolite gene activator protein at 2.9 A resolution suggests binding to left-handed B-DNA, Nature, vol.290, pp.744-753, 1981. ,
The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge, J Cell Biol, vol.142, pp.1595-604, 1998. ,
Pleiotropic control of Listeria monocytogenes virulence factors by a gene that is autoregulated, Mol Microbiol, vol.5, pp.2273-83, 1991. ,
Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans, Mol Genet Genomics, vol.272, pp.460-469, 2004. ,
Reassessing the Structure and Function Relationship of the O 2 Sensing Transcription Factor FNR, Antioxid Redox Signal, 2017. ,
DdrI, a cAMP Receptor Protein Family Member, Acts as a Major Regulator for Adaptation of Deinococcus radiodurans to Various Stresses, J Bacteriol, 0200. ,
URL : https://hal.archives-ouvertes.fr/hal-02109450
Prokaryotic ParA-ParB-parS system links bacterial chromosome segregation with the cell cycle, Plasmid, vol.67, pp.1-14, 2012. ,
Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida, Environ Microbiol, vol.13, pp.324-363, 2011. ,
SMC is recruited to oriC by ParB and promotes chromosome segregation in Streptococcus pneumoniae, Mol Microbiol, vol.81, pp.676-88, 2011. ,
DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans, Mol Microbiol, vol.13, pp.9-15, 1994. ,
A model for repair of radiation-induced DNA doublestrand breaks in the extreme radiophile Deinococcus radiodurans, Bioessays, vol.17, pp.457-64, 1995. ,
Escherichia coli cyclic AMP receptor protein mutants provide evidence for ligand contacts important in activation, J Bacteriol, vol.174, pp.8030-8035, 1992. ,
RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: a universal step of recombinational repair, Mol Cell, vol.11, pp.1337-1384, 2003. ,
Influence of the nucleoid and the early stages of DNA replication on positioning the division site in Bacillus subtilis, Mol Microbiol, vol.76, pp.634-681, 2010. ,
A Bacillus subtilis gene-encoding protein homologous to eukaryotic SMC motor protein is necessary for chromosome partition, Mol Microbiol, vol.29, pp.179-87, 1998. ,
Identification of the major protein component of the pneumococcal eclipse complex, J Bacteriol, vol.189, pp.6497-500, 2007. ,
Isolation and properties of strains of Micrococcus (Deinococcus) radiodurans unable to excise ultraviolet light-induced pyrimidine dimers from DNA: evidence for two excision pathways, J Gen Microbiol, vol.129, pp.2437-2482, 1983. ,
Transformation in Micrococcus radiodurans and the ultraviolet sensitivity of its transforming DNA, Proc Natl Acad Sci U S A, vol.61, pp.176-83, 1968. ,
Cell division in Deinococcus radiodurans and a method for displaying septa, Can J Microbiol, vol.29, pp.1412-1435, 1983. ,
OB (oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences, EMBO J, vol.12, pp.861-868, 1993. ,
Transcriptional regulation of the heat shock regulatory gene rpoH in Escherichia coli: involvement of a novel catabolite-sensitive promoter, J Bacteriol, vol.172, pp.2710-2715, 1990. ,
Degradation of Escherichia coli RecN aggregates by ClpXP protease and its implications for DNA damage tolerance, J Biol Chem, vol.281, pp.30941-30947, 2006. ,
PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation, Mol Microbiol, vol.54, pp.278-85, 2004. ,
The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation, J Bacteriol, vol.183, pp.6951-6957, 2001. ,
The structure and function of SMC and kleisin complexes, Annu Rev Biochem, vol.74, pp.595-648, 2005. ,
The essential histone-like protein HU plays a major role in Deinococcus radiodurans nucleoid compaction, Mol Microbiol, vol.73, pp.240-52, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00529821
The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli, EMBO J, vol.10, pp.183-93, 1991. ,
Signal perception by the secretion stress-responsive CssRS two-component system in Bacillus subtilis, J Bacteriol, vol.194, pp.1800-1814, 2012. ,
DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation, J Biol Chem, vol.284, pp.21402-21413, 2009. ,
Thioredoxin system from Deinococcus radiodurans, J Bacteriol, vol.192, pp.494-501, 2010. ,
Interacting regulatory circuits involved in orderly control of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1, J Bacteriol, vol.182, pp.3081-3088, 2000. ,
Identification of PprM: a modulator of the PprI-dependent DNA damage response in Deinococcus radiodurans, Extremophiles, vol.13, pp.471-480, 2009. ,
Dynamic state of DNA topology is essential for genome condensation in bacteria, EMBO J, vol.25, pp.5591-602, 2006. ,
An extreme thermophile, Thermus thermophilus, is a polyploid bacterium, J Bacteriol, vol.192, pp.5499-505, 2010. ,
Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance, BMC Evol Biol, vol.5, p.57, 2005. ,
Functional characterization of the glxR deletion mutant of Corynebacterium glutamicum ATCC 13032: involvement of GlxR in acetate metabolism and carbon catabolite repression, FEMS Microbiol Lett, vol.304, pp.107-122, 2010. ,
In vitro reconstitution of catabolite repression in Escherichia coli, J Biol Chem, vol.281, pp.6448-54, 2006. ,
Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface, J Mol Biol, vol.260, pp.395-408, 1996. ,
, Nucleoid organization in the radioresistant bacterium Deinococcus radiodurans, vol.97, pp.759-74, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01464688
Dual repression by Fe( 2+ ) Fur and Mn( 2+ ) MntR of the mntH gene, encoding an NRAMP-like Mn( 2+ ) transporter in Escherichia coli, J Bacteriol, vol.183, pp.4806-4819, 2001. ,
Expression, purification and preliminary structural analysis of the coiled-coil domain of Deinococcus radiodurans RecN, Acta Crystallogr Sect F Struct Biol Cryst Commun, vol.68, pp.218-239, 2011. ,
Structural and functional characterization of an SMC-like protein RecN: new insights into double-strand break repair, Structure, vol.20, pp.2076-89, 2012. ,
Expression, purification and preliminary structural analysis of the head domain of Deinococcus radiodurans RecN, Acta Crystallogr Sect F Struct Biol Cryst Commun, vol.68, pp.81-85, 2012. ,
A role for topoisomerase III in Escherichia coli chromosome segregation, Mol Microbiol, vol.86, pp.1007-1029, 2012. ,
Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB, J Biol Chem, vol.281, pp.34208-34225, 2006. ,
How to get (a)round: mechanisms controlling growth and division of coccoid bacteria, Nat Rev Microbiol, vol.11, pp.601-615, 2013. ,
Structural basis for cAMP-mediated allosteric control of the catabolite activator protein, Proc Natl Acad Sci U S A, vol.106, pp.6927-6959, 2009. ,
Bacterial chromosome segregation, Front Biosci (Landmark Ed), vol.17, pp.1020-1054, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01635952
Phosphorylation of Deinococcus radiodurans RecA Regulates Its Activity and May Contribute to Radioresistance, J Biol Chem, vol.291, pp.16672-85, 2016. ,
Pyrroloquinoline quinone and a quinoprotein kinase support gamma-radiation resistance in Deinococcus radiodurans and regulate gene expression, J Basic Microbiol, vol.53, pp.518-549, 2013. ,
Characterization of a DNA damage-inducible membrane protein kinase from Deinococcus radiodurans and its role in bacterial radioresistance and DNA strand break repair, Mol Microbiol, vol.77, pp.1470-82, 2010. ,
Structure-function study of deinococcal serine/threonine protein kinase implicates its kinase activity and DNA repair protein phosphorylation roles in radioresistance of Deinococcus radiodurans, Int J Biochem Cell Biol, vol.45, pp.2541-52, 2013. ,
Deletion of the cell-division inhibitor MinC results in lysis of Neisseria gonorrhoeae, Microbiology, vol.147, pp.225-262, 2001. ,
Structural insights into the mechanism of the allosteric transitions of Mycobacterium tuberculosis cAMP receptor protein, J Biol Chem, vol.284, pp.36581-91, 2009. ,
A novel CRP-dependent regulon controls expression of competence genes in Haemophilus influenzae, J Mol Biol, vol.347, pp.735-782, 2005. ,
Functional comparison of Deinococcus radiodurans Dps proteins suggests distinct in vivo roles, Biochem J, vol.447, pp.381-91, 2012. ,
Chromosome replication and segregation in bacteria, Annu Rev Genet, vol.46, pp.121-164, 2012. ,
RecN is a cohesin-like protein that stimulates intermolecular DNA interactions in vitro, J Biol Chem, vol.285, pp.16521-16530, 2010. ,
Transcription activation by the Escherichia coli cyclic AMP receptor protein: determinants within activating region 3, J Mol Biol, vol.299, pp.295-310, 2000. ,
A member of the cAMP receptor protein family of transcription regulators in Mycobacterium tuberculosis is required for virulence in mice and controls transcription of the rpfA gene coding for a resuscitation promoting factor, Mol Microbiol, vol.56, pp.1274-86, 2005. ,
Borrelia burgdorferi EbfC defines a newly-identified, widespread family of bacterial DNA-binding proteins, Nucleic Acids Res, vol.37, pp.1973-83, 2009. ,
Regulation of heat-shock genes in bacteria: from signal sensing to gene expression output, FEMS Microbiol Rev, vol.41, pp.549-574, 2017. ,
Involvement of the Slayer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1, Microbiology, vol.152, pp.2779-87, 2006. ,
E. coli DNA binding protein HU forms nucleosomelike structure with circular double-stranded DNA, Cell, vol.17, pp.265-74, 1979. ,
DNA-binding properties of a cGMPbinding CRP homologue that controls development of metabolically dormant cysts of Rhodospirillum centenum, Microbiology, vol.161, pp.2256-64, 2015. ,
RecFOR and RecOR as distinct RecA loading pathways, J Biol Chem, vol.284, pp.3264-72, 2009. ,
Bacillus subtilis RecN binds and protects 3'-singlestranded DNA extensions in the presence of ATP, Nucleic Acids Res, vol.33, pp.2343-50, 2005. ,
Recruitment of Bacillus subtilis RecN to DNA double-strand breaks in the absence of DNA end processing, J Bacteriol, vol.188, pp.353-60, 2006. ,
Down-regulation of radioresistance by LexA2 in Deinococcus radiodurans, Microbiology, vol.152, pp.3217-3243, 2006. ,
Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I, Proc Natl Acad Sci U S A, vol.97, pp.1671-1677, 2000. ,
Kleisins: a superfamily of bacterial and eukaryotic SMC protein partners, Mol Cell, vol.11, pp.571-576, 2003. ,
Role of RecA in DNA damage repair in Deinococcus radiodurans, FEMS Microbiol Lett, vol.274, pp.342-349, 2007. ,
Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans, J Bacteriol, vol.187, pp.3339-51, 2005. ,
HspR is a global negative regulator of heat shock gene expression in Deinococcus radiodurans, Mol Microbiol, vol.55, pp.1579-90, 2005. ,
Involvement of two putative alternative sigma factors in stress response of the radioresistant bacterium Deinococcus radiodurans, J Bacteriol, vol.184, pp.6182-6191, 2002. ,
Molecular and functional characterization of a carbon starvation gene of Escherichia coli, J Mol Biol, vol.218, pp.129-169, 1991. ,
Regulation of bacterial heat shock stimulons, Cell Stress Chaperones, vol.21, pp.959-968, 2016. ,
Characterization of the Lactococcus lactis transcription factor FlpA and demonstration of an in vitro switch, Mol Microbiol, vol.35, pp.1383-93, 2000. ,
Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli, J Bacteriol, vol.183, pp.7173-81, 2001. ,
DdrA, DdrD, and PprA: components of UV and mitomycin C resistance in Deinococcus radiodurans R1, PLoS One, vol.8, p.69007, 2013. ,
Occurrence of thioredoxin reductase in Deinococcus species, the UV resistant bacteria, J Microbiol, vol.44, pp.461-466, 2006. ,
The ClpPX protease is required for radioresistance and regulates cell division after gamma-irradiation in Deinococcus radiodurans, Mol Microbiol, vol.66, pp.1231-1240, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00195196
Structure of apo-CAP reveals that large conformational changes are necessary for DNA binding, Proc Natl Acad Sci U S A, vol.106, pp.16604-16613, 2009. ,
FNR activates and represses transcription in vitro, Proc Biol Sci, vol.245, pp.219-245, 1991. ,
Homology between CAP and Fnr, a regulator of anaerobic respiration in Escherichia coli, J Mol Biol, vol.166, pp.241-248, 1983. ,
A single substitution in the putative helix-turn-helix motif of the pleiotropic activator PrfA attenuates Listeria monocytogenes virulence, Mol Microbiol, vol.20, pp.785-97, 1996. ,
CooA, a CO-sensing transcription factor from Rhodospirillum rubrum, is a CO-binding heme protein, Proc Natl Acad Sci U S A, vol.94, pp.11216-11236, 1997. ,
LexA analog (dra0074) is a regulatory protein that is irrelevant to recA induction, J Biochem, vol.136, pp.787-93, 2004. ,
The Rv0805 gene from Mycobacterium tuberculosis encodes a 3',5'-cyclic nucleotide phosphodiesterase: biochemical and mutational analysis, Biochemistry, vol.44, pp.15695-704, 2005. ,
SSB as an organizer/mobilizer of genome maintenance complexes, Crit Rev Biochem Mol Biol, vol.43, pp.289-318, 2008. ,
Novel roles of cAMP receptor protein (CRP) in regulation of transport and metabolism of carbon sources, Mol Microbiol, vol.6, pp.1031-1073, 2009. ,
Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans, Cell, vol.136, pp.1044-55, 2009. ,
Oxidative stress resistance in Deinococcus radiodurans, Microbiol Mol Biol Rev, vol.75, pp.133-91, 2011. ,
Transcriptional regulation of the cpr gene cluster in ortho-chlorophenol-respiring Desulfitobacterium dehalogenans, J Bacteriol, vol.182, pp.5683-91, 2000. ,
Tricksy business: transcriptome analysis reveals the involvement of thioredoxin A in redox homeostasis, oxidative stress, sulfur metabolism, and cellular differentiation in Bacillus subtilis, J Bacteriol, vol.187, pp.3921-3951, 2005. ,
The Transcriptional Regulators of the CRP Family Regulate Different Essential Bacterial Functions and Can Be Inherited Vertically and Horizontally, Front Microbiol, vol.8, p.959, 2017. ,
Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB, Mol Microbiol, vol.45, pp.59-71, 2002. ,
The FNR family of transcriptional regulators, Antonie Van Leeuwenhoek, vol.66, pp.23-36, 1994. ,
FNR and its role in oxygen-regulated gene expression in Escherichia coli, FEMS Microbiol Rev, vol.6, pp.399-428, 1990. ,
Escherichia coli DNA topoisomerase III: purification and characterization of a new type I enzyme, Biochemistry, vol.23, pp.1899-906, 1984. ,
Carotenoid mixtures protect multilamellar liposomes against oxidative damage: synergistic effects of lycopene and lutein, FEBS Lett, vol.427, pp.305-313, 1998. ,
Mycobacterium tuberculosis cAMP receptor protein (Rv3676) differs from the Escherichia coli paradigm in its cAMP binding and DNA binding properties and transcription activation properties, J Biol Chem, vol.285, pp.7016-7043, 2010. ,
Bacterial chromosome segregation: evidence for DNA gyrase involvement in decatenation, Cell, vol.36, pp.1081-1089, 1984. ,
Multiple essential roles for EzrA in cell division of Staphylococcus aureus, Mol Microbiol, vol.80, pp.542-55, 2011. ,
Mutations in the gene coding for Escherichia coli DNA topoisomerase I affect transcription and transposition, Proc Natl Acad Sci U S A, vol.78, pp.2747-51, 1981. ,
Oxidative stress, Curr Opin Microbiol, vol.2, pp.188-94, 1999. ,
The heat shock response of E. coli is regulated by changes in the concentration of sigma 32, Nature, vol.329, pp.348-51, 1987. ,
SMC complexes in bacterial chromosome condensation and segregation, Plasmid, vol.55, pp.135-179, 2006. ,
Carbon catabolite repression in bacteria, Curr Opin Microbiol, vol.2, pp.195-201, 1999. ,
The structure of DdrB from Deinococcus: a new fold for single-stranded DNA binding proteins, Nucleic Acids Res, vol.38, pp.3432-3472, 2010. ,
Regulation of MntH by a dual Mn(II) and Fe(II)-dependent transcriptional repressor (DR2539) in Deinococcus radiodurans, PLoS One, vol.7, p.35057, 2012. ,
Resolution of converging replication forks by RecQ and topoisomerase III, Mol Cell, vol.30, pp.779-89, 2008. ,
The resistance of Micrococcus radiodurans to killing and mutation by agents which damage DNA, Mutat Res, vol.34, pp.175-86, 1976. ,
Gonococcal MinD affects cell division in Neisseria gonorrhoeae and Escherichia coli and exhibits a novel self-interaction, J Bacteriol, vol.183, pp.6253-64, 2001. ,
An equilibrium study of the cooperative binding of adenosine cyclic 3',5'-monophosphate and guanosine cyclic 3',5'-monophosphate to the adenosine cyclic 3',5'-monophosphate receptor protein from Escherichia coli, Biochemistry, vol.19, pp.5124-5154, 1980. ,
Ligand-modulated binding of a gene regulatory protein to DNA. Quantitative analysis of cyclic-AMP induced binding of CRP from Escherichia coli to non-specific and specific DNA targets, J Mol Biol, vol.207, pp.783-96, 1989. ,
Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance, Genetics, vol.168, pp.21-33, 2004. ,
Characterization of pathways dependent on the uvsE, uvrA1, or uvrA2 gene product for UV resistance in Deinococcus radiodurans, J Bacteriol, vol.187, pp.3693-3700, 2005. ,
Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae, Nucleic Acids Res, vol.30, pp.3152-62, 2002. ,
Effects of carotenoids from Deinococcus radiodurans on protein oxidation, Lett Appl Microbiol, vol.49, pp.689-94, 2009. ,
Chemiluminescence assay for reactive oxygen species scavenging activities and inhibition on oxidative damage of DNA in Deinococcus radiodurans, Luminescence, vol.19, pp.78-84, 2004. ,
Evaluation of the antioxidant effects of carotenoids from Deinococcus radiodurans through targeted mutagenesis, chemiluminescence, and DNA damage analyses, Biochim Biophys Acta, vol.1770, pp.902-913, 2007. ,
Plant-activated bacterial receptor adenylate cyclases modulate epidermal infection in the Sinorhizobium meliloti-Medicago symbiosis, Proc Natl Acad Sci U S A, vol.109, pp.6751-6757, 2012. ,
Transformation in Micrococcus radiodurans: measurement of various parameters and evidence for multiple, independently segregating genomes per cell, J. Gen. Microbiol, vol.119, pp.287-296, 1980. ,
Model for the mechanism controlling the expression of competent state in Pneumococcus cultures, J Bacteriol, vol.91, pp.1050-61, 1966. ,
CRP subunit association and hinge conformation changes in response to cAMP binding: analysis of C-helix cysteinesubstituted CRP, Biochemistry, vol.45, pp.13438-13484, 2006. ,
Cloning and characterization of nnrR, whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3, J Bacteriol, vol.178, pp.4958-64, 1996. ,
A comparative proteomic approach to better define Deinococcus nucleoid specificities, J Proteomics, vol.75, pp.2588-600, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00757315
Folding chromosomes in bacteria: examining the role of Csp proteins and other small nucleic acid-binding proteins, Curr Top Dev Biol, vol.55, pp.173-201, 2003. ,
Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation, Appl Environ Microbiol, vol.81, pp.1754-64, 2015. ,
PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli, J Bacteriol, vol.176, pp.7439-7485, 1994. ,
A Mur regulator protein in the extremophilic bacterium Deinococcus radiodurans, PLoS One, vol.9, 2014. ,
Contrasting enzymatic activities of topoisomerase IV and DNA gyrase from Escherichia coli, J Biol Chem, vol.271, pp.31549-55, 1996. ,
The cohesin-like RecN protein stimulates RecA-mediated recombinational repair of DNA double-strand breaks, Nat Commun, vol.8, pp.151-155, 1995. ,
Ring, helix, sphere and cylinder: the basic geometry of prokaryotic cell division, EMBO Rep, vol.4, pp.655-60, 2003. ,
A prokaryotic condensin/cohesin-like complex can actively compact chromosomes from a single position on the nucleoid and binds to DNA as a ring-like structure, Mol Cell Biol, vol.8, pp.5638-50, 2003. ,
Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae, Berlin/Heidelberg, vol.386, pp.704-720, 2006. ,
OMP peptide signals initiate the envelope-stress response by activating DegS protease via relief of inhibition mediated by its PDZ domain, Cell, vol.113, pp.61-71, 2003. ,
Genetic and biochemical characteristics of the histone-like protein DR0199 in Deinococcus radiodurans, Microbiology, vol.158, pp.936-979, 2012. ,
DNA topoisomerases, Annu Rev Biochem, vol.54, pp.665-97, 1985. ,
DrRRA: a novel response regulator essential for the extreme radioresistance of Deinococcus radiodurans, Mol Microbiol, vol.67, pp.1211-1233, 2008. ,
Induction of resistance to hydrogen peroxide and radiation in Deinococcus radiodurans, Can J Microbiol, vol.41, pp.170-176, 1995. ,
Different effects of recJ and recN mutations on the postreplication repair of UV-damaged DNA in Escherichia coli K-12, J Bacteriol, vol.170, pp.2555-2564, 1988. ,
Protease activity of PprI facilitates DNA damage response: Mn 2+ dependence and substrate sequence-specificity of the proteolytic reaction, Syst Appl Microbiol, vol.10, pp.128-162, 1989. ,
Identification of a DNA nonhomologous end-joining complex in bacteria, Science, vol.297, pp.1686-1695, 2002. ,
The CssRS two-component regulatory system controls a general secretion stress response in Bacillus subtilis, FEBS J, vol.273, pp.3816-3843, 2006. ,
, Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1, vol.286, pp.1571-1578, 1999.
Effect of lipid peroxidation on the properties of lipid bilayers: a molecular dynamics study, Biophys J, vol.93, pp.4225-4261, 2007. ,
Amino acids of walls of Micrococcus radiodurans, Nature, vol.201, pp.1107-1109, 1964. ,
Homologous recombination and the repair of DNA double-strand breaks, J Biol Chem, vol.293, pp.10524-10535, 2018. ,
Nucleoid occlusion and bacterial cell division, Nature reviews Microbiology, vol.10, pp.8-12, 2012. ,
DNA double-strand break repair: all's well that ends well, Annu Rev Genet, vol.40, pp.363-83, 2006. ,
Deinococcus petrolearius sp. nov. isolated from crude oil recovery water in China, Antonie Van Leeuwenhoek, vol.111, pp.353-360, 2018. ,
DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans, DNA Repair (Amst), vol.9, pp.805-817, 2010. ,
RecO is essential for DNA damage repair in Deinococcus radiodurans, J Bacteriol, vol.190, pp.2624-2632, 2008. ,
The Nudix hydrolases of Deinococcus radiodurans, Mol Microbiol, vol.39, pp.286-90, 2001. ,
Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli, Mol Gen Genet, vol.250, pp.241-51, 1996. ,
Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli, EMBO J, vol.18, pp.5873-84, 1999. ,
Cyclic AMP Receptor Protein Acts as a Transcription Regulator in Response to Stresses in Deinococcus radiodurans, PLoS One, vol.11, 2010. ,
, DRA0336, another OxyR homolog, involved in the antioxidation mechanisms in Deinococcus radiodurans, J Microbiol, vol.48, pp.473-482
Characterization of the alternative excision repair pathway of UV-damaged DNA in Schizosaccharomyces pombe, Nucleic Acids Res, vol.25, pp.1553-1561, 1997. ,
Isolation of highly radioresistant bacterium, Arthrobacter radiotolerans nov. sp. Agric, Biol. Chem, vol.37, pp.2269-2275, 1973. ,
Role of residue 138 in the interdomain hinge region in transmitting allosteric signals for DNA binding in Escherichia coli cAMP receptor protein, Biochemistry, vol.43, pp.4662-4671, 2004. ,
Role of the C terminus of FtsK in Escherichia coli chromosome segregation, J Bacteriol, vol.180, pp.6424-6432, 1998. ,
, , 2009.
, Deinococcus gobiensis sp. nov., an extremely radiation-resistant bacterium, Int J Syst Evol Microbiol, vol.59, pp.1513-1520
Reassembly of shattered chromosomes in Deinococcus radiodurans, Nature, vol.443, pp.569-73, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00116806
Roles of topoisomerases in maintaining steadystate DNA supercoiling in Escherichia coli, J Biol Chem, vol.275, pp.8103-8116, 2000. ,
Knockout of pprM Decreases Resistance to Desiccation and Oxidation in Deinococcus radiodurans, Indian J Microbiol, vol.57, pp.316-321, 2017. ,
Proteomic analysis of Deinococcus radiodurans recovering from gamma-irradiation, Proteomics, vol.5, pp.138-181, 2005. ,
Induction of a futile Embden-Meyerhof-Parnas pathway in Deinococcus radiodurans by Mn: possible role of the pentose phosphate pathway in cell survival, Appl Environ Microbiol, vol.66, pp.105-117, 2000. ,
Knockout of crtB or crtI gene blocks the carotenoid biosynthetic pathway in Deinococcus radiodurans R1 and influences its resistance to oxidative DNA-damaging agents due to change of free radicals scavenging ability, Arch Microbiol, vol.188, pp.411-420, 2007. ,
Identification of the CRP regulon using in vitro and in vivo transcriptional profiling, Nucleic Acids Res, vol.32, pp.5874-93, 2004. ,
Activation of the OxyR transcription factor by reversible disulfide bond formation, Science, vol.279, pp.1718-1739, 1998. ,
Essential constituents of the 3'-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme, J Biol Chem, vol.280, pp.33707-33722, 2005. ,
Microbial DNA topoisomerases and their inhibition by antibiotics, J Basic Microbiol, vol.30, pp.209-233, 1990. ,
A ring-like nucleoid is not necessary for radioresistance in the Deinococcaceae, BMC Microbiol, vol.5, p.17, 2005. ,
Molecular Mechanisms of TwoComponent Signal Transduction, J Mol Biol, vol.428, pp.3752-75, 2016. ,
The oligonucleotides used for construction of all these strains are listed in S2 Table. The double mutants were constructed by transformation of a single mutant by the genomic DNA of another single mutant. Genomic DNA of D. radiodurans was purified and transformation of D. radiodurans with PCR products or genomic DNA was performed as previously described [8]. The genetic structure and the purity of mutant strains were verified by PCR. Oligonucleotides used for diagnostic PCR and sequencing are available upon request. D. radiodurans bacteria were grown at 30?C in TGY2X (1% tryptone, 0.2% dextrose, 0.6% yeast extract) or plated on TGY1X containing 1.5% agar. E. coli bacteria were grown at 37?C in Luria Broth. Media were supplemented with the appropriate antibiotics used at the following concentrations: hygromycin, 50 ?g/ml for D. radiodurans; chloramphenicol, 35 ?g/ml for E. coli and 3.5 ?g/ml for D. radiodurans; kanamycin, 30 ?g/ml for E, CIRCE, a novel heat shock element involved in regulation of heat shock operon dnaK of Bacillus subtilis, vol.176, pp.1359-63, 1994. ,
, Thermo-Scientific) (4361 bp), as well as 200 ng of RFI (5386 bp) or single-stranded DNA of phiX174 virion were, ng of supercoiled pBR322 or pBR322 linearized by PstI, p.12
After 15 min incubation at 4?C, 4 ?l of 6X DNA Loading Dye (Fermentas) were added to the mixture before electrophoresis through 1.2% agarose gels. All the non-denaturing electrophoreses were performed in TEP buffer (36 mM Tris-HCl, pH 7.8, 30 mM NaH 2 PO 4 , 1 mM EDTA) at 4.3V/cm for 3 h at 4?C. After staining of the gels with ethidium bromide (1 ?g/ml) for 30 min, bands were visualized under UV, using Image Lab (Bio-Rad) software. Binding of DdrC protein to oligonucleotides was performed using a single-stranded 67-mer Cy5 labeled oligonucleotide (oligo-67) or the corresponding double-stranded 67-mer substrate, glycerol) with increasing concentrations of DdrC (0.86 ?M, 1.7 ?M, 3.5 ?M, 7 ?M and 8.6 ?M), vol.1, p.18568848, 2008. ,
Bacterial and archaeal resistance to ionizing radiation, J Phys:ConfSer, vol.261, 2011. ,
A new perspective on radiation resistance based on Deinococcus radiodurans, Nat Rev Microbiol, vol.7, p.19172147, 2009. ,
DNA repair in hyperthermophilic and hyperradioresistant microorganisms, Curr Opin Microbiol, vol.25, p.26056771, 2015. ,
Oxidative stress resistance in Deinococcus radiodurans, Microbiol Mol Biol Rev, vol.75, p.21372322, 2011. ,
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation, Proc Natl Acad Sci U S A, vol.100, p.12651953, 2003. ,
Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance, Genetics, vol.168, p.15454524, 2004. ,
The deinococcal DdrB protein is involved in an early step of DNA double-strand break repair and in plasmid transformation through its single-strand annealing activity, DNA Repair (Amst), vol.10, pp.1223-1231, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00764859
Mechanism for accurate, protein-assisted DNA annealing by Deinococcus radiodurans DdrB, Proc Natl Acad Sci U S A, vol.113, p.27044084, 2016. ,
DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans, DNA Repair (Amst), vol.9, pp.805-812, 2010. ,
Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1, PLoS Biol, vol.2, p.15361932, 2004. ,
Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1, Mol Microbiol, vol.59, p.16359339, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00079723
PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation, Mol Microbiol, vol.54, p.15458422, 2004. ,
PprA protein is involved in chromosome segregation via its physical and functional interaction with DNA gyrase in Irradiated Deinococcus radiodurans bacteria, vol.1, pp.36-51, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01412363
The PprA protein is required for accurate cell division of gamma-irradiated Deinococcus radiodurans bacteria, DNA Repair (Amst), vol.12, pp.265-272, 2013. ,
PprA contributes to Deinococcus radiodurans resistance to nalidixic acid, genome maintenance after DNA damage and interacts with In vivo and in vitro characterization of, DdrC PLOS ONE, 2014. ,
, deinococcal topoisomerases, vol.9, p.24454836
DdrA, DdrD, and PprA: components of UV and mitomycin C resistance in Deinococcus radiodurans R1, PLoS One, vol.8, p.23840905, 2013. ,
Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics, Microbiol Mol Biol Rev, vol.65, p.11238985, 2001. ,
Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1, Science, vol.286, p.10567266, 1999. ,
Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti, PLoS Genetics, vol.5, p.19370165, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00379051
Improved complete genome sequence of the extremely radioresistant bacterium Deinococcus radiodurans R1 obtained using Pacbio single-molecule sequencing, Genome Announc, vol.4, p.27587813, 2016. ,
Deinococcus geothermalis: The pool of extreme radiation resistance genes shrinks, PLoS ONE, vol.2, p.17895995, 2007. ,
DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in the radioresistant Deinococcus radiodurans bacterium, Mol Microbiol, vol.96, p.25754115, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01464823
Radiation response in Deinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO, Mol Microbiol, vol.94, p.25170972, 2014. ,
Protease activity of PprI facilitates DNA damage response: Mn2+-dependence and substrate sequence-specificity of the proteolytic reaction, PLoS One, vol.10, p.25811789, 2015. ,
Crystal structure of the IrrE protein, a central regulator of DNA damage repair in Deinococcaceae, J Mol Biol, vol.386, p.19150362, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00532606
Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans, Mol Genet Genomics, vol.272, p.15503140, 2004. ,
The Deinococcus radiodurans SMC protein is dispensable for cell viability yet plays a role in DNA folding, Extremophiles, vol.13, p.19629621, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00527433
, Nucleoid organization in the radioresistant bacterium Deinococcus radiodurans, vol.97, p.25988355, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01464688
Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: A common step in genetic recombination, Proc Natl Acad Sci U S A, vol.99, p.12438681, 2002. ,
C-terminal region of bacterial Ku controls DNA bridging, DNA threading and recruitment of DNA ligase D for double strand breaks repair, Nucleic Acids Res, vol.44, pp.4785-4806, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01457533
Isolation and properties of strains of Micrococcus (Deinococcus) radiodurans unable to excise ultraviolet light-induced pyrimidine dimers from DNA: evidence for two excision pathways, J Gen Microbiol, vol.129, p.6415229, 1983. ,
Characterization of pathways dependent on the uvsE, uvrA1, or gene product for UV resistance in Deinococcus radiodurans, J Bacteriol, vol.187, p.15901692, 2005. ,
High-resolution AFM imaging of single-stranded DNA-binding (SSB) protein-DNA complexes, Nucleic Acids Res, vol.35, p.17392343, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-02295472
DrRRA: a novel response regulator essential for the extreme radioresistance of Deinococcus radiodurans, Mol Microbiol, vol.67, p.18208531, 2008. ,
RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti, Genome Biol Evol, vol.6, p.24723731, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02014046
Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans, Cell, vol.136, p.19303848, 2009. ,
Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation, J Bacteriol, vol.178, p.8550493, 1996. ,
Analysis of interaction between DNA and Deinococcus radiodurans PprA protein by atomic force microscopy, Biochim Biophys Acta, vol.1764, p.16309981, 2006. ,
DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation, J Biol Chem, vol.284, p.19515845, 2009. ,
, DdrC PLOS ONE, 201720-05-18.