Species-specific responses of Late Quaternary megafauna to climate and humans, Nature, vol.479, issue.7373, pp.359-364, 2011. ,
Interrogating a High-Density SNP Map for Signatures of Natural Selection, Genome Research, vol.12, issue.12, pp.1805-1814, 2002. ,
, What We Know and Why it Matters. Annual Review of Genomics and Human Genetics, vol.3, issue.1, pp.129-152, 2002.
Genetic data suggest a natural prehuman origin of open habitats in northern Madagascar and question the deforestation narrative in this region, Proceedings of the National Academy of Sciences, vol.109, issue.32, pp.13028-13033, 2012. ,
An Integrated Framework for the Inference of Viral Population History From Reconstructed Genealogies, Genetics, vol.155, issue.3, p.10880500, 2000. ,
Skyline-plot methods for estimating demographic history from nucleotide sequences, Molecular Ecology Resources, vol.11, issue.3, pp.423-434, 2011. ,
Recent population decline and selection shape diversity of taxol-related genes, Molecular Ecology, vol.21, issue.12, p.22574693, 2012. ,
Detecting past changes of effective population size, Evolutionary Applications, vol.7, issue.6, p.25067949, 2014. ,
Inference of human population history from individual whole-genome sequences, Nature, vol.475, pp.493-496, 2011. ,
Inferring human population size and separation history from multiple genome sequences, Nature Genetics, vol.46, p.24952747, 2014. ,
Estimating Variable Effective Population Sizes from Multiple Genomes: A Sequentially Markov Conditional Sampling Distribution Approach, Genetics, vol.194, issue.3, pp.647-662, 2013. ,
Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors, Molecular Biology and Evolution, vol.30, issue.9, p.23842528, 2013. ,
Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data, Genome Research, 2015. ,
, , p.25564017
Approximating the coalescent with recombination, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.360, pp.1387-1393, 1459. ,
coalescent" simulation, BMC Genetics, vol.7, issue.1, p.16, 2006. ,
Properties of a neutral allele model with intragenic recombination, Theoret Popul Biol, vol.23, pp.183-201, 1983. ,
Inbreeding in Danish Dairy Cattle Breeds, Journal of Dairy Science, vol.88, issue.5, pp.1865-1872, 2005. ,
Analyse généalogique des races bovines laitières françaises, INRA Prod Anim, vol.9, issue.5, pp.323-335, 1996. ,
Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse, Genetics Selection Evolution, vol.45, issue.1, 2013. ,
DOI : 10.1186/1297-9686-45-1
URL : https://hal.archives-ouvertes.fr/hal-01019858
Approximate Bayesian Computation in Population Genetics, Genetics, vol.162, issue.4, p.12524368, 2002. ,
Demographic History of Oceania Inferred from Genome-wide Data, Current Biology, vol.20, issue.22, pp.1983-1992, 2010. ,
DOI : 10.1016/j.cub.2010.10.040
URL : https://doi.org/10.1016/j.cub.2010.10.040
Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation, BMC Genetics, vol.13, issue.1, p.22, 2012. ,
DOI : 10.1186/1471-2156-13-22
URL : https://bmcgenet.biomedcentral.com/track/pdf/10.1186/1471-2156-13-22
Inferring the History of Population Size Change from Genome-Wide SNP Data, Molecular Biology and Evolution, vol.29, issue.12, p.22787284, 2012. ,
Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data, PLoS Genet, vol.11, issue.11, p.24244198, 2013. ,
Examining Phylogenetic Relationships Among Gibbon Genera Using Whole Genome Sequence Data Using an Approximate Bayesian Computation Approach, Genetics, vol.200, issue.1, p.25769979, 2015. ,
DOI : 10.1534/genetics.115.174425
URL : http://www.genetics.org/content/200/1/295.full.pdf
Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size, Genome Research, vol.13, issue.4, pp.635-643, 2003. ,
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data, PLoS Genet. 2009, vol.10, issue.10 ,
Demographic Inference Using Spectral Methods on SNP Data, with an Analysis of the Human Out-of-Africa Expansion, Genetics, vol.192, issue.2, p.22865734, 2012. ,
Robust Demographic Inference from Genomic and SNP Data, PLoS Genet, vol.10, issue.10, p.24204310, 2013. ,
DOI : 10.1371/journal.pgen.1003905
URL : https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1003905&type=printable
The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists, Nature Communications, vol.5, p.10061680, 2014. ,
URL : https://hal.archives-ouvertes.fr/halshs-01178754
Exploring population size changes using SNP frequency spectra, Nature genetics, vol.47, issue.5, p.25848749, 2015. ,
DOI : 10.1038/ng.3254
URL : http://europepmc.org/articles/pmc4414822?pdf=render
, Inferring Population Size History from Genome-Wide Data Using ABC, PLOS Genetics, 2016.
Non-linear regression models for Approximate Bayesian Computation, Statistics and Computing, vol.20, issue.1, pp.63-73, 2010. ,
A comparative review of dimension reduction methods in approximate Bayesian computation, Statistical Science, vol.28, pp.189-208, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00861839
On the history of cattle genetic resources, Diversity, vol.6, issue.4, pp.705-750, 2014. ,
Analyses of pig genomes provide insight into porcine demography and evolution, Nature, vol.491, pp.393-398, 2012. ,
URL : https://hal.archives-ouvertes.fr/cea-00880676
Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation, Nature Genetics, vol.45, issue.1, p.23242367, 2013. ,
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs, Science, vol.346, issue.6215, 2014. ,
Drastic population fluctuations explain the rapid extinction of the passenger pigeon, Proceedings of the National Academy of Sciences, vol.111, issue.29, pp.10636-10641, 2014. ,
A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness, PLoS Genet, vol.4, issue.4, 2014. ,
Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle, Nat Genet, vol.46, p.25017103, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01193853
Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds, Science, vol.324, issue.5926, pp.528-532, 2009. ,
Domestication and early agriculture in the Mediterranean Basin: Origins, diffusion, and impact, Proceedings of the National Academy of Sciences, vol.105, issue.33, pp.11597-11604, 2008. ,
Dual Origins of Dairy Cattle Farming-Evidence from a Comprehensive Survey of European Y-Chromosomal Variation, PLoS ONE, vol.6, issue.1, 20111. ,
Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds, PLoS ONE, vol.9, issue.9, p.20927341, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-01193678
On the Breeds of Cattle-Historic and Current Classifications, Diversity, vol.3, issue.4, pp.660-692, 2011. ,
Approximate Bayesian Computation (ABC) in practice, Trends in Ecology and Evolution, vol.25, issue.7, pp.410-418, 2010. ,
Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs, Genome Research, p.21518737, 2011. ,
Estimation of effective population size from data on linkage disequilibrium, Genetics Research, vol.38, pp.209-216, 1981. ,
Inferring population size changes with sequence and SNP data: lessons from human bottlenecks, Heredity, vol.110, pp.409-419, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00809457
How Population Growth Affects Linkage Disequilibrium, Genetics, 2014. ,
, Inferring Population Size History from Genome-Wide Data Using ABC, PLOS Genetics, 2016.
Estimation of historical effective population size using linkage disequilibria with marker data, Journal of Animal Breeding and Genetics, vol.129, issue.4, pp.257-270, 2012. ,
Descartes' rule of signs and the identifiability of population demographic models from genomic variation data, Ann Statist, vol.12, issue.6, pp.2469-2493, 2014. ,
Inferring Bottlenecks from Genome-Wide Samples of Short Sequence Blocks, Genetics, vol.201, issue.3, pp.1157-1169, 2015. ,
Inferring Demographic History from a Spectrum of Shared Haplotype Lengths, PLoS Genet, vol.6, issue.6, 2013. ,
Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data, PLoS ONE, vol.7, issue.7, p.22911679, 2012. ,
Genome-Wide Estimation of Linkage Disequilibrium from Population-Level HighThroughput Sequencing Data, Genetics, 2014. ,
Effective population size of an indigenous Swiss cattle breed estimated from linkage disequilibrium, Journal of Animal Breeding and Genetics, vol.127, issue.5, p.20831557, 2010. ,
Accurate Estimation of Effective Population Size in the Korean Dairy Cattle Based on Linkage Disequilibrium Corrected by Genomic Relationship Matrix ,
, Asian Australas J Anim Sci, vol.26, issue.12, p.25049757, 2013.
Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection, PLoS Biol, vol.10, issue.2, p.22346734, 2012. ,
The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes, Genetics, vol.186, issue.3, p.20739713, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00601940
Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure, Molecular Ecology, vol.19, issue.21, p.20735743, 2010. ,
The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History, PLoS ONE, vol.5, issue.5, 2013. ,
Demographic inference using genetic data from a single individual: Separating population size variation from population structure, Theoretical Population Biology, vol.104, pp.46-58, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01887143
On the importance of being structured: instantaneous coalescence rates and human evolution-lessons for ancestral population size inference, Heredity, vol.PMID, p.26647653, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01633153
Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation, Bioinformatics, vol.24, issue.23, p.18842597, 2008. ,
Genetic Variants in REC8, RNF212, and PRDM9 Influence Male Recombination in Cattle, PLoS Genet, vol.7, issue.7, 2012. ,
Linkage Disequilibrium Between Loci With Unknown Phase, Genetics, vol.182, pp.839-844, 2009. ,
Generating samples under a Wright-Fisher neutral model of genetic variation, Bioinformatics, vol.18, p.11847089, 2002. ,
GCTA: A Tool for Genome-wide Complex Trait Analysis, The American Journal of Human Genetics, vol.88, issue.1, pp.76-82, 2011. ,
abc: an R package for approximate Bayesian computation (ABC), Methods in Ecology and Evolution, vol.3, issue.3, pp.475-479, 2012. ,
Lectures on probability theory and statistics, 2004. ,
High-density marker imputation accuracy in sixteen French cattle breeds, Genetics Selection Evolution, vol.45, issue.1, p.33, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01001056
, Inferring Population Size History from Genome-Wide Data Using ABC
, No structured constantsize population
, Comparing the T 2 values
, , p.9
, Number of rejections with alpha=0, vol.05, p.5
, The corresponding ms-command is: ./utils/ms, vol.2, p.10000
, M_list, lambda_list, n_obs, number_of_tests) Sampling in the same island, The corresponding ms-command is: ./utils/ms, vol.2, p.10000
, The corresponding ms-command is: ./utils/ms, vol.2, p.10000
, M_list, lambda_list, n_obs, number_of_tests) Sampling in the same island, The corresponding ms-command is: ./utils/ms, vol.2, p.10000
, The corresponding ms-command is: ./utils/ms, vol.2, p.10000
, Now changing both, gene flow and population size
, M_list, lambda_list, n_obs, number_of_tests) Sampling in the same island, The corresponding ms-command is: ./utils/ms, vol.2, p.10000
A new look at the statistical model identification. Automatic Control, IEEE Transactions on, vol.19, issue.6, pp.716-723, 1974. ,
Coalescence time for two genes from a subdivided population, Journal of Mathematical Biology, vol.43, issue.5, pp.397-410, 2001. ,
DOI : 10.1007/s002850100104
Neutral evolution in spatially continuous populations, Theoretical Population Biology, vol.61, issue.1, pp.31-48, 2002. ,
DOI : 10.1006/tpbi.2001.1557
, Genealogies and geography. Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol.349, pp.49-59, 1327.
Detecting population expansion and decline using microsatellites, Genetics, vol.153, issue.4, pp.2013-2029, 1999. ,
Approximate bayesian computation in evolution and ecology. Annual review of ecology, evolution, and systematics, vol.41, pp.379-406, 2010. ,
DOI : 10.1146/annurev-ecolsys-102209-144621
Approximate bayesian computation in population genetics, Genetics, vol.162, issue.4, pp.2025-2035, 2002. ,
Inferring population size history from large samples of genome-wide molecular data -an approximate bayesian computation approach, PLoS Genet, vol.12, issue.3, pp.1-36, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01310742
Genetic bottlenecks driven by population disconnection, Conservation Biology, vol.24, issue.6, pp.1596-1605, 2010. ,
URL : https://hal.archives-ouvertes.fr/halsde-00538676
, , 2013.
, Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution, PLoS Genet, vol.9, issue.3, pp.1-8
The latent roots of certain markov chains arising in genetics: A new approach, i. haploid models, Advances in Applied Probability, vol.6, issue.2, pp.260-290, 1974. ,
Effective population size and patterns of molecular evolution and variation, Nat Rev Genet, vol.10, issue.3, pp.195-205, 2009. ,
DOI : 10.1038/nrg2526
The effects of genetic and geographic structure on neutral variation, Evolution, and Systematics, pp.99-125, 2003. ,
Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study, Molecular Ecology Notes, vol.7, issue.5, pp.747-756, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00370267
The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes, Genetics, vol.186, issue.3, pp.983-995, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00601940
Baps 2: enhanced possibilities for the analysis of genetic population structure, Bioinformatics, vol.20, issue.15, pp.2363-2369, 2004. ,
Inferring population history with diy abc: a user-friendly approach to approximate bayesian computation, Bioinformatics, vol.24, issue.23, pp.2713-2719, 2008. ,
DOI : 10.1093/bioinformatics/btn514
URL : https://academic.oup.com/bioinformatics/article-pdf/24/23/2713/16885395/btn514.pdf
Eighty years ago: the beginnings of population genetics, Genetics, vol.119, issue.3, p.473, 1988. ,
Approximate bayesian computation (abc) in practice, Trends in Ecology & Evolution, vol.25, issue.7, pp.410-418, 2010. ,
Comment on "ongoing adaptive evolution of aspm, a brain size determinant in homo sapiens" and "microcephalin, a gene regulating brain size, continues to evolve adaptively in humans, Science, vol.313, issue.5784, pp.172-172, 2006. ,
, Modèles aléatoires, 2006.
Coalescents and genealogical structure under neutrality, Annual Review of Genetics, vol.29, issue.1, p.8825481, 1995. ,
DOI : 10.1146/annurev.genet.29.1.401
Bayesian coalescent inference of past population dynamics from molecular sequences, Molecular Biology and Evolution, vol.22, issue.5, pp.1185-1192, 2005. ,
Probability models for DNA sequence evolution, 2008. ,
DOI : 10.1007/978-1-4757-6285-3
Mathematical Population Genetics 1: Theoretical Introduction, vol.27, 2012. ,
Evolutionary trees from dna sequences: A maximum likelihood approach, Journal of Molecular Evolution, vol.17, issue.6, pp.368-376, 1981. ,
DOI : 10.1007/bf01734359
The genetical theory of natural selection: a complete variorum edition, 1930. ,
Inferring population decline and expansion from microsatellite data: A simulation-based evaluation of the msvar method, Genetics, vol.188, issue.1, pp.165-179, 2011. ,
Human migrations and population structure: what we know and why it matters, Annual Review of Genomics and Human Genetics, vol.3, issue.1, pp.129-152, 2002. ,
Genetic signature of anthropogenic population collapse in orang-utans, PLoS Biology, vol.4, issue.2, p.285, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00122669
, , p.346, 2014.
The number of heterozygous loci between two randomly chosen completely linked sequences of loci in two subdivided population models, Journal of Mathematical Biology, vol.12, issue.2, pp.251-261, 1981. ,
Simulating probability distributions in the coalescent, Theoretical Population Biology, vol.46, issue.2, pp.131-159, 1994. ,
Sampling theory for neutral alleles in a varying environment, Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol.344, pp.403-410, 1310. ,
Analyses of pig genomes provide insight into porcine demography and evolution, Nature, vol.491, pp.393-398, 2012. ,
URL : https://hal.archives-ouvertes.fr/cea-00880676
Geneland: a computer package for landscape genetics, Molecular Ecology Notes, vol.5, issue.3, pp.712-715, 2005. ,
Inferring the joint demographic history of multiple populations from multidimensional snp frequency data, PLoS Genet, vol.5, issue.10, p.1000695, 2009. ,
Acceleration of evolutionary spread by long-range dispersal, Proceedings of the National Academy of Sciences, vol.111, issue.46, pp.4911-4919, 2014. ,
A structured ancestral population for the evolution of modern humans. Current opinion in genetics & development, vol.14, pp.667-674, 2004. ,
Mendelian proportions in a mixed population, Science, vol.28, issue.706, pp.49-50, 1908. ,
Genetic perspectives on human origins and differentiation, Annual Review of Genomics and Human Genetics, vol.1, issue.1, pp.361-385, 2000. ,
The confounding effect of population structure on bayesian skyline plot inferences of demographic history, PLoS ONE, vol.8, issue.5, p.62992, 2013. ,
Stochastic models in population genetics: genealogy and genetic differentiation in structured populations, 1994. ,
The study of structured populations -new hope for a difficult and divided science, Nat Rev Genet, vol.4, issue.7, pp.535-543, 2003. ,
On computing the coalescence time density in an isolation-with-migration model with few samples, Genetics, vol.187, issue.4, pp.1241-1243, 2011. ,
Properties of a neutral allele model with intragenic recombination, Theoretical Population Biology, vol.23, issue.2, pp.183-201, 1983. ,
Generating samples under a wright-fisher neutral model of genetic variation, Bioinformatics, vol.18, issue.2, pp.337-338, 2002. ,
Gene genealogies and the coalescent process, Oxford surveys in evolutionary biology, vol.7, p.44, 1990. ,
Drastic population fluctuations explain the rapid extinction of the passenger pigeon, Proceedings of the National Academy of Sciences, vol.111, issue.29, pp.10636-10641, 2014. ,
On the genealogy of nested subsamples from a haploid population, Advances in Applied Probability, vol.16, issue.3, pp.471-491, 1984. ,
Scipy: Open source scientific tools for python, 2001. ,
The stepping stone model of population structure and the decrease of genetic correlation with distance, Genetics, vol.49, issue.4, pp.561-76, 1964. ,
, The coalescent. Stochastic Processes and their Applications, vol.13, pp.235-248, 1982.
Exchangeability and the evolution of large populations, Exchangeability in Probability and Statistics, pp.97-112, 1982. ,
On the genealogy of large populations, Journal of Applied Probability, vol.19, pp.27-43, 1982. ,
Survival analysis: techniques for censored and truncated data, 2003. ,
Genetics of recent habitat contraction and reduction in population size: does isolation by distance matter?, Molecular Ecology, vol.15, issue.12, pp.3601-3615, 2006. ,
Inference of human population history from individual whole-genome sequences, Nature, vol.475, issue.7357, pp.493-496, 2011. ,
Exploring population size changes using snp frequency spectra, Nature genetics, 2015. ,
Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors, Molecular Biology and Evolution, vol.30, issue.9, pp.2209-2223, 2013. ,
Fast "coalescent" simulation, BMC Genetics, vol.7, issue.1, pp.1-9, 2006. ,
On the importance of being structured: instantaneous coalescence rates and human evolution[mdash]lessons for ancestral population size inference, 2015. ,
, Heredity
Demographic inference using genetic data from a single individual: Separating population size variation from population structure, Theoretical Population Biology, vol.104, pp.46-58, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01887143
Inference of gorilla demographic and selective history from whole genome sequence data, Molecular Biology and Evolution, pp.600-612, 2015. ,
Approximating the coalescent with recombination, Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol.360, pp.1387-1393, 1459. ,
Approximating the coalescent with recombination, Philos. Trans. R. Soc. Lond., B, Biol. Sci, vol.360, pp.1387-93, 1459. ,
Nineteen dubious ways to compute the exponential of a matrix, twenty-five years later, SIAM Review, vol.45, issue.1, pp.3-49, 2003. ,
Random processes in genetics, Mathematical Proceedings of the Cambridge Philosophical Society, vol.54, pp.60-71, 1958. ,
The strong-migration limit in geographically structured populations, Journal of Mathematical Biology, vol.9, issue.2, pp.101-114, 1980. ,
Effective population size, genetic diversity, and coalescence time in subdivided populations, J. Mol. Evol, vol.37, issue.3, pp.240-244, 1993. ,
A simplex method for function minimization, The computer journal, vol.7, issue.4, pp.308-313, 1965. ,
Statistical inferences in phylogeography, Molecular Ecology, vol.18, issue.6, pp.1034-1047, 2009. ,
Distinguishing migration from isolation: A markov chain monte carlo approach, Genetics, vol.158, issue.2, pp.885-896, 2001. ,
Detecting past changes of effective population size, Evolutionary Applications, vol.7, issue.6, pp.663-681, 2014. ,
Coalescent theory. Handbook of Statistical Genetics, 2001. ,
The coalescent and the genealogical process in geographically structured population, Journal of Mathematical Biology, vol.29, issue.1, pp.59-75, 1990. ,
The strong-migration limit for the genealogical process in geographically structured populations, Journal of Mathematical Biology, vol.31, issue.2, pp.115-122, 1993. ,
From genetic diversity and structure to conservation: genetic signature of recent population declines in three mouse lemur species (microcebus spp, Biological Conservation, vol.141, issue.5, pp.1257-1271, 2008. ,
The demographic history of populations experiencing asymmetric gene flow: combining simulated and empirical data, Molecular ecology, vol.22, issue.12, pp.3279-3291, 2013. ,
Distinguishing between population bottleneck and population subdivision by a bayesian model choice procedure, Molecular Ecology, vol.19, issue.21, pp.4648-4660, 2010. ,
Great ape genetic diversity and population history, Nature, vol.499, issue.7459, pp.471-475, 2013. ,
Inference of population structure using multilocus genotype data, Genetics, vol.155, issue.2, pp.945-959, 2000. ,
, , pp.43-49, 2014.
An integrated framework for the inference of viral population history from reconstructed genealogies, Genetics, vol.155, issue.3, pp.1429-1437, 2000. ,
Genetic data suggest a natural prehuman origin of open habitats in northern madagascar and question the deforestation narrative in this region, Proceedings of the National Academy of Sciences, vol.109, issue.32, pp.13028-13033, 2012. ,
Population growth makes waves in the distribution of pairwise genetic differences, Molecular biology and evolution, vol.9, issue.3, pp.552-569, 1992. ,
, Processus stochastiques: avec applications aux phénomènes d'attente et de fiabilité, vol.6, 1989.
Signature of a pre-human population decline in the critically endangered reunion island endemic forest bird coracina newtoni, PloS one, vol.7, issue.8, p.43524, 2012. ,
Inferring human population size and separation history from multiple genome sequences, Nat Genet, vol.46, issue.8, pp.919-925, 2014. ,
Estimating variable effective population sizes from multiple genomes: A sequentially markov conditional sampling distribution approach, Genetics, vol.194, issue.3, pp.647-662, 2013. ,
On the meaning and existence of an effective population size, Genetics, vol.169, issue.2, pp.1061-1070, 2005. ,
Population divergence with or without admixture: selecting models using an abc approach, Heredity, vol.108, issue.5, pp.521-530, 2012. ,
The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations, Genetics, vol.182, issue.1, pp.205-216, 2009. ,
Exploring the demographic history of dna sequences using the generalized skyline plot, Molecular Biology and Evolution, vol.18, issue.12, pp.2298-2305, 2001. ,
The coalescent in two partially isolated diffusion populations, Genetical Research, vol.52, pp.213-222, 1988. ,
Part i: Ancestral inference in population genetics, Lectures on Probability Theory and Statistics, vol.1837, pp.1-188, 2004. ,
Detecting natural selection in genomic data, Annual Review of Genetics, vol.47, pp.97-120, 2013. ,
Population subdivision and molecular sequence variation: Theory and analysis of drosophila ananassae data, Genetics, vol.165, issue.3, pp.1385-1395, 2003. ,
Nonequilibrium migration in human history, Genetics, vol.153, issue.4, pp.1863-1871, 1999. ,
The coalescent in an island model of population subdivision with variation among demes, Theoretical Population Biology, vol.59, issue.2, pp.133-144, 2001. ,
Coalescent theory: an introduction, Number, vol.575, pp.519-521, 2009. ,
Gene genealogies in a metapopulation, Genetics, vol.159, issue.2, pp.893-905, 2001. ,
Extensions of the coalescent effective population size, Genetics, vol.181, issue.1, pp.341-345, 2009. ,
The diploid genome sequence of an asian individual, Nature, vol.456, issue.7218, pp.60-65, 2008. ,
Estimating divergence parameters with small samples from a large number of loci, Genetics, vol.184, issue.2, pp.363-379, 2010. ,
On the number of segregating sites in genetical models without recombination, Theoretical Population Biology, vol.7, issue.2, pp.256-276, 1975. ,
, Über vererbungsgesetze beim menschen. Zeitschrift für Induktive Abstammungs-und Vererbungslehre, vol.1, pp.440-460, 1908.
The coalescent in a continuous, finite, linear population, Genetics, vol.161, issue.2, pp.873-888, 2002. ,
Genealogy and subpopulation differentiation under various models of population structure, Journal of Mathematical Biology, vol.37, issue.6, pp.535-585, 1998. ,
Evolution in mendelian populations, Genetics, vol.16, issue.2, p.97, 1931. ,
Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle, Nature Genetics, vol.45, issue.5, pp.563-566, 2013. ,
Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation, Nature Genetics, vol.45, issue.1, pp.67-71, 2013. ,
Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations, Nat Commun, vol.4, 2013. ,
DOI : 10.1038/ncomms3708
URL : https://www.nature.com/articles/ncomms3708.pdf
Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history, Nature Genetics, vol.46, issue.12, pp.1303-1310, 2014. ,