Influence of the Photorhabdus luminescens phosphomannose isomerase gene, manA, on mannose utilization, exopolysaccharide structure, and biofilm formation, Appl. Environ. Microbiol, vol.77, pp.776-785, 2011. ,
Differential expression analysis for sequence count data, Genome Biol, vol.11, p.106, 2010. ,
Estimation of temperature dependent growth rate and lag time of Listeria monocytogenes by optical density measurements, J. Microbiol. Methods, vol.38, pp.137-146, 1999. ,
Microbial cell individuality and the underlying sources of heterogeneity, Nat. Rev. Microbiol, vol.4, pp.577-587, 2006. ,
Regulation of pap pilin phase variation by a mechanism involving differential dam methylation states, EMBO J, vol.9, pp.4045-4054, 1990. ,
Biochemical and physiological characterization of colony form variants in Xenorhabdus spp. (Enterobacteriaceae), J. Gen. Microbiol, vol.134, pp.751-761, 1988. ,
Insecticidal toxins from the bacterium Photorhabdus luminescens, Science, vol.280, pp.2129-2132, 1998. ,
Methylation patterns in pap regulatory DNA control pyelonephritis-associated pili phase variation in E. coli, Cell, vol.76, pp.577-588, 1994. ,
, , 2002.
, The PhlA hemolysin from the entomopathogenic bacterium Photorhabdus luminescens belongs to the two-partner secretion family of hemolysins, J. Bacteriol, vol.184, pp.3871-3878
Characterization of a small PlcRregulated gene co-expressed with cereolysin O, BMC Microbiol, vol.7, p.52, 2007. ,
Two distinct hemolytic activities in Xenorhabdus nematophila are active against immunocompetent insect cells, Appl. Environ. Microbiol, vol.67, pp.2515-2525, 2001. ,
Phase variation controls expression of Salmonella lipopolysaccharide modification genes by a DNA methylation-dependent mechanism, Mol. Microbiol, vol.77, pp.337-353, 2010. ,
Site-specific antiphagocytic function of the Photorhabdus luminescens type III secretion system during insect colonization, Cell. Microbiol, vol.7, pp.363-371, 2005. ,
An epigenetic switch involving overlapping fur and DNA methylation optimizes expression of a type VI secretion gene cluster, PLoS Genet, vol.7, p.1002205, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01458278
Bacterial DNA methylation and methylomes, Adv. Exp. Med. Biol, vol.945, pp.35-61, 2016. ,
Programmed heterogeneity: epigenetic mechanisms in bacteria, J. Biol. Chem, vol.288, pp.13929-13935, 2013. ,
The HcaR regulatory protein of Photorhabdus luminescens affects the production of proteins involved in oxidative stress and toxemia, Proteomics, vol.7, pp.4499-4510, 2007. ,
Alteration of DNA adenine methylase (Dam) activity in Pasteurella multocida causes increased spontaneous mutation frequency and attenuation in mice, Microbiology, vol.149, pp.2283-2290, 2003. ,
Photorhabdus: a model for the analysis of pathogenicity and mutualism, Cell. Microbiol, vol.10, pp.2159-2167, 2008. ,
The ProDom database of protein domain families, Nucleic Acids Res, vol.26, pp.323-326, 1998. ,
URL : https://hal.archives-ouvertes.fr/hal-00428470
, , 2016.
, OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica, Nucleic Acids Res, vol.44, pp.3595-3609
The global regulator Lrp contributes to mutualism, pathogenesis and phenotypic variation in the bacterium Xenorhabdus nematophila, Cell. Microbiol, vol.9, pp.1311-1323, 2007. ,
DNA adenine methylation is required to replicate both Vibrio cholerae chromosomes once per cell cycle, PLoS Genet, vol.6, p.1000939, 2010. ,
AstR-AstS, a new two-component signal transduction system, mediates swarming, adaptation to stationary phase and phenotypic variation in Photorhabdus luminescens, Microbiology, vol.150, pp.897-910, 2004. ,
The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects, J. Bacteriol, vol.186, pp.1270-1279, 2004. ,
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens, Nat. Biotechnol, vol.21, pp.1307-1313, 2003. ,
Motility is required for the competitive fitness of entomopathogenic Photorhabdus luminescens during insect infection, BMC Microbiol, vol.8, p.168, 2008. ,
Mutations within the catalytic motif of DNA adenine methyltransferase (Dam) of Aeromonas hydrophila cause the virulence of the Dam-overproducing strain to revert to that of the wild-type phenotype, Infect. Immun, vol.74, pp.5763-5772, 2006. ,
DNA adenine methyltransferase influences the virulence of Aeromonas hydrophila, Infect. Immun, vol.74, pp.410-424, 2006. ,
DNA adenine methylase mutants of Salmonella typhimurium show defects in protein secretion, cell invasion, and M cell cytotoxicity, Proc. Natl. Acad. Sci. U.S.A, vol.96, pp.11578-11583, 1999. ,
A syringe-like injection mechanism in Photorhabdus luminescens toxins, Nature, vol.495, pp.520-523, 2013. ,
Swarming and swimming changes concomitant with phase variation in Xenorhabdus nematophilus, Appl. Environ. Microbiol, vol.61, pp.1408-1413, 1995. ,
FlhDC, the flagellar master operon of Xenorhabdus nematophilus: requirement for motility, lipolysis, extracellular hemolysis, and full virulence in insects, J. Bacteriol, vol.182, pp.107-115, 2000. ,
Flagellar Regulation and Virulence in the Entomopathogenic Bacteria-Xenorhabdus nematophila and Photorhabdus luminescens, Curr. Top. Microbiol. Immunol, vol.402, pp.39-51, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01604010
Microbial bet-hedging: the power of being different, Curr. Opin. Microbiol, vol.25, pp.67-72, 2015. ,
Analysis of nonmethylated GATC sites in the Escherichia coli chromosome and identification of sites that are differentially methylated in response to environmental stimuli, J. Bacteriol, vol.176, pp.3438-3441, 1994. ,
An essential role for DNA adenine methylation in bacterial virulence, Science, vol.284, pp.967-970, 1999. ,
The major phase-variable outer membrane protein of Escherichia coli structurally resembles the immunoglobulin A1 and OxyR, J. Bacteriol, vol.181, pp.2132-2141, 1999. ,
DNA adenine methylation and bacterial pathogenesis, Int. J. Med. Microbiol, vol.297, pp.1-7, 2007. ,
Structure and substrate recognition of the Escherichia coli DNA adenine methyltransferase, J. Mol. Biol, vol.358, pp.559-570, 2006. ,
The role of motility as a virulence factor in bacteria, Int. J. Med. Microbiol, vol.291, pp.605-614, 2002. ,
FliZ is a global regulatory protein affecting the expression of flagellar and virulence genes in individual Xenorhabdus nematophila bacterial cells, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01190077
, PLoS Genet, vol.9, p.1003915
DNA adenine methylase is essential for viability and plays a role in the pathogenesis of Yersinia pseudotuberculosis and Vibrio cholerae, Infect. Immun, vol.69, pp.7610-7615, 2001. ,
DNA adenine methylase overproduction in Yersinia pseudotuberculosis alters YopE expression and secretion and host immune responses to infection, Infect. Immun, vol.70, pp.1006-1009, 2002. ,
Role of the Campylobacter jejuni Cj1461 DNA methyltransferase in regulating virulence characteristics, J. Bacteriol, vol.190, pp.6524-6529, 2008. ,
Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes, Gene, vol.166, pp.175-176, 1995. ,
Pleiotropic role of quorum-sensing autoinducer 2 in Photorhabdus luminescens, Appl. Environ. Microbiol, vol.72, pp.6439-6451, 2006. ,
FliZ, a flagellar regulator, is at the crossroads between motility, haemolysin expression and virulence in the insect pathogenic bacterium Xenorhabdus, Mol. Microbiol, vol.68, pp.516-533, 2008. ,
Draft genome sequence and annotation of the entomopathogenic bacterium Xenorhabdus nematophila strain F1, Genome Announc, vol.1, pp.342-355, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01837259
Transcriptional analysis of a Photorhabdus sp. variant reveals transcriptional control of phenotypic variation and multifactorial pathogenicity in insects, Appl. Environ. Microbiol, vol.77, 2011. ,
Software for computing and annotating genomic ranges, PLoS Comput. Biol, vol.9, 2013. ,
Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, vol.25, pp.1754-1760, 2009. ,
Human DNA methylomes at base resolution show widespread epigenomic differences, Nature, vol.462, pp.315-322, 2009. ,
Dam methylation: coordinating cellular processes, Curr. Opin. Microbiol, vol.8, pp.154-160, 2005. ,
Chromosomal replication incompatibility in Dam methyltransferase deficient Escherichia coli cells, EMBO J, vol.15, pp.5999-6008, 1996. ,
Clocks and switches: bacterial gene regulation by DNA adenine methylation, Curr. Opin. Microbiol, vol.11, pp.106-112, 2008. ,
Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more, FEMS Microbiol. Rev, vol.33, pp.488-503, 2009. ,
DNA methylation. EcoSal Plus 6, 2014. ,
A Dam methylation mutant of Klebsiella pneumoniae is partially attenuated, FEMS Microbiol. Lett, vol.268, pp.187-193, 2007. ,
Ail and PagC-related proteins in the entomopathogenic bacteria of Photorhabdus genus, PLoS ONE, vol.9, p.110060, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01075791
An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence, Sci. Rep, vol.7, p.43670, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606548
How the insect pathogen bacteria Bacillus thuringiensis and Xenorhabdus/Photorhabdus occupy their hosts, Curr. Opin. Microbiol, vol.15, pp.220-231, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01004177
Co-regulation of motility, exoenzyme and antibiotic production by the EnvZ-OmpR-FlhDC-FliA pathway in Xenorhabdus nematophila, Mol. Microbiol, vol.61, pp.1397-1412, 2006. ,
Two different stator systems drive a single polar flagellum in Shewanella oneidensis MR-1, Mol. Microbiol, vol.71, pp.836-850, 2009. ,
Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR, Nucleic Acids Res, vol.30, 2002. ,
Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria, Gene, vol.127, issue.93, pp.90611-90617, 1993. ,
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes, Nucleic Acids Res, vol.31, pp.1805-1812, 2003. ,
REBASE-a database for DNA restriction and modification: enzymes, genes and genomes, Nucleic Acids Res, vol.43, 2015. ,
A dam mutant of Yersinia pestis is attenuated and induces protection against plague, FEMS Microbiol. Lett, vol.252, pp.251-256, 2005. ,
DNA methylation impacts gene expression and ensures hypoxic survival of Mycobacterium tuberculosis, PLoS Pathog, vol.9, p.1003419, 2013. ,
A single promoter inversion switches Photorhabdus between pathogenic and mutualistic states, Science, vol.337, pp.88-93, 2012. ,
Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli, Nat Biotechnol, vol.16, pp.566-571, 1998. ,
Primer3-new capabilities and interfaces, Nucleic Acids Res, vol.40, p.115, 2012. ,
, , 2013.
Leucine-responsive regulatory protein and deoxyadenosine methylase control the phase variation and expression of the sfa and daa pili operons in Escherichia coli, Nucleic Acids Res, vol.41, pp.605-618, 1994. ,
Bistability, epigenetics, and bet-hedging in bacteria, Annu. Rev. Microbiol, vol.62, pp.193-210, 2008. ,
Inactivation of deoxyadenosine methyltransferase (dam) attenuates Haemophilus influenzae virulence, .x Frontiers in Microbiology | www.frontiersin.org 13, vol.53, p.1671, 2004. ,
Penetration of Insect Cuticle by Infective Juveniles of Heterorhabditis Spp. (Heterorhabditidae : Nematoda), 1982. ,
The pbgPE Operon in Photorhabdus Luminescens Is Required for Pathogenicity and Symbiosis, Journal of Bacteriology, vol.187, issue.1, pp.77-84, 2005. ,
Insertional Inactivation of Genes Encoding the Crystalline Inclusion Proteins of Photorhabdus Luminescens Results in Mutants with Pleiotropic Phenotypes, Journal of Bacteriology, vol.180, issue.5, pp.1261-69, 1998. ,
Symbiotic Bacteria of Entomopathogenic Nematodes, and a Proposal To Transfer Xenorhabdus Luminescens to a New Genus, Photorhabdus Gen, International Journal of Systematic and Evolutionary Microbiology, vol.43, issue.2, pp.249-55, 1993. ,
Isolation and Characterization of Intracellular Protein Inclusions Produced by the Entomopathogenic Bacterium Photorhabdus Luminescens, Applied and Environmental Microbiology, vol.67, issue.10, pp.4834-4875, 2001. ,
The PhlA Hemolysin from the Entomopathogenic Bacterium Photorhabdus Luminescens Belongs to the Two-Partner Secretion Family of Hemolysins, Journal of Bacteriology, vol.184, issue.14, pp.3871-78, 2002. ,
Epigenetic Gene Regulation in the Bacterial World, Microbiology and Molecular Biology Reviews: MMBR, vol.70, issue.3, pp.830-56, 2006. ,
Alteration of DNA Adenine Methylase (Dam) Activity in Pasteurella Multocida Causes Increased Spontaneous Mutation Frequency and Attenuation in Mice, Microbiology, pp.2283-90, 2003. ,
For the Insect Pathogen Photorhabdus Luminescens, Which End of a Nematode Is Out?, Applied and Environmental Microbiology, vol.69, issue.4, pp.1890-97, 2003. ,
Cell Invasion and Matricide during Photorhabdus Luminescens Transmission by Heterorhabditis Bacteriophora Nematodes, Applied and Environmental Microbiology, vol.74, issue.8, pp.2275-87, 2008. ,
Photorhabdus: A Model for the Analysis of Pathogenicity and Mutualism, Cellular Microbiology, vol.10, issue.11, pp.2159-67, 2008. ,
The Genetic Basis of the Symbiosis between Photorhabdus and Its Invertebrate Hosts, Advances in Applied Microbiology, vol.88, pp.1-29, 2014. ,
The Regulation of Secondary Metabolism in Photorhabdus, Current Topics in Microbiology and Immunology, vol.402, pp.81-102, 2017. ,
Virulence Mechanisms of Photorhabdus Sp. Strain K122 toward Wax Moth Larvae, Journal of Invertebrate Pathology, vol.66, issue.2, pp.149-55, 1995. ,
Integrating DNA Methylation and Gene Expression Data in the Development of the SoybeanBradyrhizobium N2-Fixing Symbiosis, Frontiers in Microbiology, 2016. ,
Identification of Genes Involved in the Mutualistic Colonization of the Nematode Heterorhabditis Bacteriophora by the Bacterium Photorhabdus Luminescens, BMC Microbiology, vol.10, p.45, 2010. ,
DNA Adenine Methylase Mutants of Salmonella Typhimurium Show Defects in Protein Secretion, Cell Invasion, and M Cell Cytotoxicity, Proceedings of the National Academy of Sciences of the United States of America, vol.96, pp.11578-83, 1920. ,
flhDC, the Flagellar Master Operon of Xenorhabdus Nematophilus: Requirement for Motility, Lipolysis, Extracellular Hemolysis, and Full Virulence in Insects, Journal of Bacteriology, vol.182, issue.1, pp.107-122, 2000. ,
A Novel Tool for Stable Genomic Reporter Gene Integration to Analyze Heterogeneity in Photorhabdus Luminescens at the Single-Cell Level, BioTechniques, vol.59, issue.2, pp.74-81, 2015. ,
Pathogenicity, Development, and Reproduction of Heterorhabditis Bacteriophora and Steinernema Carpocapsae under Axenic in Vivo Conditions, Journal of Invertebrate Pathology, vol.75, issue.1, pp.55-58, 2000. ,
An Essential Role for DNA Adenine Methylation in Bacterial Virulence, Science, vol.284, issue.5416, pp.967-70, 1999. ,
Common Molecular Mechanisms of Symbiosis and Pathogenesis, Trends in Microbiology, vol.8, issue.5, pp.226-257, 2000. ,
DNA Adenine Methylation Changes Dramatically during Establishment of Symbiosis, The FEBS Journal, vol.274, issue.4, pp.951-62, 2007. ,
Epigenetic Modification of Rhizobial Genome Is Essential for Efficient Nodulation, Biochemical and Biophysical Research Communications, vol.389, issue.2, pp.301-305, 2009. ,
FliZ Is a Global Regulatory Protein Affecting the Expression of Flagellar and Virulence Genes in Individual Xenorhabdus Nematophila Bacterial Cells, PLoS Genetics, vol.9, issue.10, p.1003915, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01190077
DNA Adenine Methylase Is Essential for Viability and Plays a Role in the Pathogenesis of Yersinia Pseudotuberculosis and Vibrio Cholerae, Infection and Immunity, vol.69, issue.12, pp.7610-7625, 2001. ,
DNA Adenine Methylase Overproduction in Yersinia Pseudotuberculosis Alters YopE Expression and Secretion and Host Immune Responses to Infection, Infection and Immunity, vol.70, issue.2, pp.1006-1015, 2002. ,
Insect Pathogens as Biological Control Agents: Back to the Future, Journal of Invertebrate Pathology, vol.132, pp.1-41, 2015. ,
A Dam Methylation Mutant of Klebsiella Pneumoniae Is Partially Attenuated, FEMS Microbiology Letters, vol.268, issue.2, pp.187-93, 2007. ,
How the Insect Pathogen Bacteria Bacillus Thuringiensis and Xenorhabdus/Photorhabdus Occupy Their Hosts, Current Opinion in Microbiology, vol.15, issue.3, pp.220-251, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01004177
DNA Adenine Methyltransferase (Dam) Overexpression Impairs Photorhabdus Luminescens Motility and Virulence, Frontiers in Microbiology, vol.8, p.1671, 2017. ,
DOI : 10.3389/fmicb.2017.01671
URL : https://hal.archives-ouvertes.fr/hal-01628662
A Dam Mutant of Yersinia Pestis Is Attenuated and Induces Protection against Plague, FEMS Microbiology Letters, vol.252, issue.2, pp.251-56, 2005. ,
Photorhabdus Phase Variants Express a Novel Fimbrial Locus, Mad, Essential for Symbiosis, Molecular Microbiology, vol.77, issue.4, pp.1021-1059, 2010. ,
A Single Promoter Inversion Switches Photorhabdus between Pathogenic and Mutualistic States, Science, vol.337, issue.6090, pp.88-93, 2012. ,
Inactivation of Deoxyadenosine Methyltransferase (Dam) Attenuates Haemophilus Influenzae Virulence, Molecular Microbiology, vol.53, issue.2, pp.651-64, 2004. ,
The exbD Gene of Photorhabdus Temperata Is Required for Full Virulence in Insects and Symbiosis with the Nematode Heterorhabditis, Molecular Microbiology, vol.56, issue.3, pp.763-73, 2005. ,
Inactivation of DNA Adenine Methyltransferase Alters Virulence Factors in Actinobacillus Actinomycetemcomitans, e international journal of biochemistry & cell biology, vol.21, issue.4, pp.391-395, 2000. ,
Adenine Methylation in Euaryotic DNA, Molecular Biology, vol.39, pp.473-481, 2005. ,
,
e content of 5-methylcytosine in animal DNA: e species and tissue specificity, Biochimica et Biophysica Acta (BBA)-Nucleic Acids and Protein Synthesis, vol.299, pp.397-403, 1973. ,
DNA methylation in thermophilic bacteria: N4-methylcytosine, 5-methylcytosine, and N6-methyladenine, Nucleic Acids es, vol.13, pp.1399-1412, 1985. ,
, Bacterial DNA Methylation and Methylomes. Advances in experimental medicine and biology, vol.945, pp.35-61, 2016.
DNA methylation: bisulphite modification and analysis, Nature protocols, vol.1, pp.2353-2364, 2006. ,
Direct detection of DNA methylation during single-molecule, real-time sequencing, Nature methods, vol.7, pp.461-465, 2010. ,
Highlights of the DNA cutters: a short history of the restriction enzymes, Nucleic Acids es, vol.42, pp.3-19, 2014. ,
EBASE-a database for DNA restriction and modification: enzymes, genes and genomes, Nucleic Acids es, vol.43, pp.298-299, 2015. ,
, DNA Mismatch epair. EcoSal Plus, 2012.
Leucine-responsive regulatory protein controls the expression of both the pap andfan pili operons in Escherichia coli, Proceedings of the National Academy of Sciences, vol.89, pp.4250-4254, 1992. ,
Methylation patterns in pap regulatory DNA control pyelonephritis-associated pili phase variation in E. coli, Cell, vol.76, pp.577-588, 1994. ,
Alteration of DNA adenine methylase (Dam) activity in Pasteurella multocida causes increased spontaneous mutation frequency and attenuation in mice, Microbiology, vol.149, pp.2283-2290, 2003. ,
Mutations within the catalytic motif of DNA adenine methyltransferase (Dam) of Aeromonas hydrophila cause the virulence of the Dam-overproducing strain to revert to that of the wild-type phenotype, Infection and Immunity, vol.74, pp.5763-5772, 2006. ,
Salmonella DNA adenine methylase mutants confer cross-protective immunity, Infect Immun, vol.69, pp.6725-6730, 2001. ,
DOI : 10.1128/iai.69.11.6725-6730.2001
URL : https://iai.asm.org/content/69/11/6725.full.pdf
DNA adenine methylase is essential for viability and plays a role in the pathogenesis of Yersinia pseudotuberculosis and Vibrio cholerae, Infect Immun, vol.69, pp.7610-7615, 2001. ,
DNA adenine methylase overproduction in Yersinia pseudotuberculosis alters YopE expression and secretion and host immune responses to infection, Infect Immun, vol.70, pp.1006-1009, 2002. ,
DNA Adenine Methyltransferase (Dam) Overexpression Impairs Photorhabdus luminescens Motility andVirulence, Frontiers in microbiology 8, 1671, 2017. ,
DOI : 10.3389/fmicb.2017.01671
URL : https://www.frontiersin.org/articles/10.3389/fmicb.2017.01671/pdf
An essential role for DNA adenine methylation in bacterial virulence, Science, vol.284, pp.967-970, 1999. ,
A Dam methylation mutant of lebsiella pneumoniae is partially attenuated, FEMS Microbiology Letters, vol.268, pp.187-193, 2007. ,
A dam mutant of Yersinia pestis is attenuated and induces protection against plague, FEMS Microbiology Letters, vol.252, pp.251-256, 2005. ,
Inactivation of deoxyadenosine methyltransferase (dam) attenuates Haemophilus influenzae virulence, Molecular Microbiology, vol.53, pp.651-664, 2004. ,
Inactivation of DNA adenine methyltransferase alters virulence factors in Actinobacillus actinomycetemcomitans, Oral Microbiology and Immunology, vol.21, pp.238-244, 2006. ,
, Eco Sal Plus, vol.6, 2014.
Cytosine DNA methylation influences drug resistance in Escherichia coli through increased sugE expression, FEMS Microbiology Letters, vol.350, pp.100-106, 2014. ,
Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription, Nature communications, vol.3, 2012. ,
Epigenetic gene regulation in the bacterial world, Microbiol Mol Biol ev, vol.70, pp.830-856, 2006. ,
A DNA methylation ratchet governs progression through a bacterial cell cycle, Proc Natl Acad Sci, vol.104, pp.17111-17116, 2007. ,
A Caulobacter DNA methyltransferase that functions only in the predivisional cell, J Mol Biol, vol.235, pp.472-485, 1994. ,
A cell cycle-regulated bacterial DNA methyltransferase is essential for viability, Proc Natl Acad Sci, vol.93, pp.1210-1214, 1996. ,
e functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach, Nucleic Acids es, vol.42, pp.3720-3735, 2014. ,
e Epigenomic Landscape of Proaryotes, Plos Genet, vol.12, 2016. ,
Comparative Genomics eveals the Diversity of estriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes, Appl Environ Microbiol, vol.83, 2017. ,
, The datasets generated and analysed during the current study are available at https
Integrating DNA Methylation and Gene Expression Data in the Development of the SoybeanBradyrhizobium N2-Fixing Symbiosis, Frontiers in microbiology, vol.8, pp.12091-12125, 2016. ,
Comparative Analysis of alstonia solanacearum Methylomes. Frontiers in plant science 8, vol.504, 2017. ,
Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing, Nature biotechnology, vol.30, pp.1232-1239, 2012. ,
e complete methylome of Helicobacter pylori UM032, BMC Genomics, vol.16, 2015. ,
A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data, Frontiers in microbiology, vol.5, 2014. ,
Precision methylome characterization of Mycobacterium tuberculosis complex (MTBC) using PacBio single-molecule real-time (SMMT) technology. Nucleic Acids es 44, pp.730-743, 2016. ,
Methylome Analysis of Two Xanthomonas spp, vol.32, pp.500-507, 2016. ,
SMT sequencing of the Campylobacter coli Bf-CA-9557 genome sequence reveals unique methylation motifs, BMC Genomics, vol.16, 1088. ,
How the insect pathogen bacteria Bacillus thuringiensis and Xenorhabdus/Photorhabdus occupy their hosts, Curr Opin Microbiol, vol.15, p.6, 2012. ,
A single promoter inversion switches Photorhabdus between pathogenic and mutualistic states, Science, vol.337, pp.88-93, 2012. ,
An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence, Scientific reports, vol.7, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606548
e genome sequence of the entomopathogenic bacterium Photorhabdus luminescens, Nature biotechnology, vol.21, pp.1307-1313, 2003. ,
Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus, BMC Genomics, vol.11, 2010. ,
A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI), pp.3019-3030, 2010. ,
Identification of a Pseudomonas aeruginosa PAO1 DNA Methyltransferase, Its Targets, and Physiological oles, 2017. ,
A role for the bacterial GATC methylome in antibiotic stress survival, Nature genetics, vol.48, pp.581-586, 2016. ,
Genomewide Dam Methylation in Escherichia coli during Long-Term Stationary Phase. mSystems 1, 2016. ,
Lineage-Specific Methyltransferases Define the Methylome of the Globally Disseminated Escherichia coli ST131 Clone, vol.6, pp.1602-01615, 2015. ,
Efficient and accurate whole genome assembly and methylome profiling of E. coli, BMC Genomics, vol.14, 2013. ,
Phase variation of a Type IIG restriction-modification enzyme alters site-specific methylation patterns and gene expression in Campylobacter jejuni strain NCTC11168, Nucleic Acids esearch, vol.44, pp.4581-4594, 2016. ,
A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae, Nature communications, vol.6, 2015. ,
, Molecular Pathogenesis and Signal Transduction by, pp.105-127, 2017.
Phase variation of DNA methyltransferases and the regulation of virulence and immune evasion in the pathogenic Neisseria, Pathogens and disease, vol.75, 2017. ,
e PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects, Journal of bacteriology, vol.186, pp.1270-1279, 2004. ,
Cell Cycle Constraints and Environmental Control of Local DNA Hypomethylation in ?-Proteobacteria, Plos Genetics, vol.12, 2016. ,
DNA adenine methyltransferase influences the virulence of Aeromonas hydrophila, Infection and Immunity, vol.74, pp.410-424, 2006. ,
Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules, BioTechniques, vol.61, pp.203-205, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01603946
Mauve: multiple alignment of conserved genomic sequence with rearrangements, Genome research, vol.14, pp.1394-1403, 2004. ,
e methylomes of six bacteria, Nucleic Acids esearch, vol.40, pp.11450-11462, 2012. ,
e Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline, Plos One, vol.10, 2015. ,
Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq), Nature protocols, vol.12, pp.534-547, 2017. ,
Bismar: a flexible aligner and methylation caller for Bisulfite-Seq applications, Bioinformatics, vol.27, pp.1571-1572, 2011. ,
MEME-ChIP: motif analysis of large DNA datasets, Bioinformatics, vol.27, pp.1696-1697, 2011. ,
DistAMo: A Web-Based Tool to Characterize DNA-Motif Distribution on Bacterial Chromosomes, Frontiers in microbiology, vol.7, 2016. ,
elative expression soware tool (EST) for group-wise comparison and statistical analysis of relative expression results in real-time PCC, Nucleic Acids es, vol.30, p.36, 2002. ,
The Coordinated Functions of the E. Coli MutS and MutL Proteins in Mismatch Repair, Molecular Cell, vol.12, issue.1, pp.233-279, 2003. ,
Restriction Landmark Genomic Scanning (RLGSM)-Based Genome-Wide Scanning of Mouse Liver Tumors for Alterations in DNA Methylation Status, Cancer Research, vol.57, issue.15, pp.3294-99, 1997. ,
Morphological and Functional Dimorphism in Xenorhabdus Spp., Bacteria Symbiotically Associated with the Insect Pathogenic Nematodes Neoaplectana and Heterorhabditis, Microbiology, vol.121, issue.2, pp.303-312, 1980. ,
DNA Sequencing with Chain-Terminating Inhibitors.-PubMedNCBI, Accessed September, vol.13, 1977. ,
The Effect of Methylation on DNA Replication in Salmonella Enterica Serovar Typhimurium, Comptes Rendus Biologies, vol.330, issue.8, pp.576-80, 2007. ,
Initiation of Methyl-Directed Mismatch Repair, The Journal of Biological Chemistry, vol.267, issue.17, pp.12142-12190, 1992. ,
Dam Methylation Is Required for Efficient Biofilm Production in Salmonella Enterica Serovar Enteritidis, International Journal of Food Microbiology, vol.193, pp.15-22, 2015. ,
Biogenesis of E. Coli Pap Pili: papH, a Minor Pilin Subunit Involved in Cell Anchoring and Length Modulation, Cell, vol.49, issue.2, pp.241-51, 1987. ,
Alarmone (p)ppGpp Regulates the Transition from Pathogenicity to Mutualism in Photorhabdus Luminescens, Molecular Microbiology, vol.100, issue.4, pp.735-782, 2016. ,
DNA Adenine Methylation Regulates Virulence Gene Expression in Salmonella Enterica Serovar Typhimurium, Journal of Bacteriology, vol.188, issue.23, pp.8160-68, 2006. ,
Mechanisms of Antimicrobial Peptide Resistance in Gram-Negative Bacteria, Antibiotics, vol.4, issue.1, pp.18-41, 2015. ,
Penetration of Insect Cuticle by Infective Juveniles of Heterorhabditis Spp. (Heterorhabditidae : Nematoda), 1982. ,
The pbgPE Operon in Photorhabdus Luminescens Is Required for Pathogenicity and Symbiosis, Journal of Bacteriology, vol.187, issue.1, pp.77-84, 2005. ,
A Cell Cycle-Regulated Adenine DNA Methyltransferase from Caulobacter Crescentus Processively Methylates GANTC Sites on Hemimethylated DNA, Proceedings of the National Academy of Sciences, vol.95, issue.6, pp.2874-79, 1998. ,
Genome-Wide DNA Methylation Profiling, Wiley Interdisciplinary Reviews. Systems Biology and Medicine, vol.2, issue.2, pp.210-233, 2010. ,
Biology of DNA Restriction, Microbiological Reviews, vol.57, issue.2, pp.434-50, 1993. ,
Insertional Inactivation of Genes Encoding the Crystalline Inclusion Proteins of Photorhabdus Luminescens Results in Mutants with Pleiotropic Phenotypes, Journal of Bacteriology, vol.180, issue.5, pp.1261-69, 1998. ,
Control of Bacteriophage P2 Gene Expression: Analysis of Transcription of the Ogr Gene, Journal of Bacteriology, vol.173, issue.21, pp.6927-6961, 1991. ,
The Epigenomic Landscape of Prokaryotes, PLoS Genetics, vol.12, issue.2, 2016. ,
Regulation of Pap Pilin Phase Variation by a Mechanism Involving Differential Dam Methylation States, The EMBO Journal, vol.9, issue.12, pp.4045-54, 1990. ,
Biochemical and physiological characterization of colony form variants in Xenorhabdus spp. (Enterobacteriaceae), Journal of General Microbiology, vol.134, pp.751-761, 1988. ,
Symbiotic Bacteria of Entomopathogenic Nematodes, and a Proposal To Transfer Xenorhabdus Luminescens to a New Genus, Photorhabdus Gen, International Journal of Systematic and Evolutionary Microbiology, vol.43, issue.2, pp.249-55, 1993. ,
Simple Bacteriological Tests for Phenotypic Characterization of Xenorhabdus and Photorhabdus Phase Variants, Symbiosis, vol.22, p.131058, 1997. ,
Flagellar Phase Variation in Salmonella Enterica Is Mediated by a Posttranscriptional Control Mechanism, Journal of Bacteriology, vol.185, issue.12, pp.3567-74, 2003. ,
Isolation and Characterization of Intracellular Protein Inclusions Produced by the Entomopathogenic Bacterium Photorhabdus Luminescens, Applied and Environmental Microbiology, vol.67, issue.10, pp.4834-4875, 2001. ,
Methylation Patterns in Pap Regulatory DNA Control Pyelonephritis-Associated Pili Phase Variation in E. Coli, Cell, vol.76, issue.3, pp.577-88, 1994. ,
Sequence Information Can Be Obtained from Single DNA Molecules, Proceedings of the National Academy of Sciences of the United States of America, vol.100, issue.7, pp.3960-64, 2003. ,
DOI : 10.1073/pnas.0230489100
URL : http://www.pnas.org/content/100/7/3960.full.pdf
The PhlA Hemolysin from the Entomopathogenic Bacterium Photorhabdus Luminescens Belongs to the Two-Partner Secretion Family of Hemolysins, Journal of Bacteriology, vol.184, issue.14, pp.3871-78, 2002. ,
Phase Variation Controls Expression of Salmonella Lipopolysaccharide Modification Genes by a DNA Methylation-Dependent Mechanism, Molecular Microbiology, vol.77, issue.2, pp.337-53, 2010. ,
Site-Specific Antiphagocytic Function of the Photorhabdus Luminescens Type III Secretion System during Insect Colonization, Cellular Microbiology, vol.7, issue.3, pp.363-71, 2005. ,
An Epigenetic Switch Involving Overlapping Fur and DNA Methylation Optimizes Expression of a Type VI Secretion Gene Cluster, PLoS Genetics, vol.7, issue.7, p.1002205, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01458278
In Vivo Requirement for RecJ, ExoVII, ExoI, and ExoX in Methyl-Directed Mismatch Repair, Proceedings of the National Academy of Sciences of the United States of America, vol.98, issue.12, pp.6765-70, 2001. ,
The Na+-Specific Interaction between the LysR-Type Regulator, NhaR, and the nhaA Gene Encoding the Na+/H+ Antiporter of Escherichia Coli, The EMBO Journal, vol.16, pp.5922-5951, 1997. ,
Bacterial DNA Methylation and Methylomes, Advances in Experimental Medicine and Biology, vol.945, pp.35-61, 2016. ,
Epigenetic Gene Regulation in the Bacterial World, Microbiology and Molecular Biology Reviews: MMBR, vol.70, issue.3, pp.830-56, 2006. ,
Programmed Heterogeneity: Epigenetic Mechanisms in Bacteria, The Journal of Biological Chemistry, vol.288, issue.20, pp.13929-13964, 2013. ,
The Type VI Secretion Toolkit, EMBO Reports, vol.9, issue.8, pp.735-776, 2008. ,
Transcript Abundance of Photorhabdus Insect-Related (Pir) Toxin in Manduca Sexta and Galleria Mellonella Infections, Toxins, vol.8, issue.10, 2016. ,
,
The proPO-System: Pros and Cons for Its Role in Invertebrate Immunity, Trends in Immunology, vol.29, issue.6, pp.263-71, 2008. ,
Building Biological Memory by Linking Positive Feedback Loops, Proceedings of the National Academy of Sciences, vol.107, issue.1, pp.175-80, 2010. ,
The Cyclomodulin Cif of Photorhabdus Luminescens Inhibits Insect Cell Proliferation and Triggers Host Cell Death by Apoptosis, Microbes and Infection, vol.12, pp.1208-1226, 2010. ,
Alteration of DNA Adenine Methylase (Dam) Activity in Pasteurella Multocida Causes Increased Spontaneous Mutation Frequency and Attenuation in Mice, Microbiology, pp.2283-90, 2003. ,
Correct Timing of dnaA Transcription and Initiation of DNA Replication Requires Trans Translation, Journal of Bacteriology, vol.191, issue.13, pp.4268-75, 2009. ,
Regulators of Oxidative Stress Response Genes in Escherichia Coli and Their Functional Conservation in Bacteria, Archives of Biochemistry and Biophysics, vol.525, issue.2, pp.161-69, 2012. ,
Regulation of Bacteriophage P2 Late-Gene Expression: The Ogr Gene, Proceedings of the National Academy of Sciences of the United States of America, vol.83, issue.10, pp.3238-3280, 1986. ,
Bacteriophage P2, Bacteriophage, vol.6, issue.1, p.1145782, 2016. ,
A Phosphopantetheinyl Transferase Homolog Is Essential for Photorhabdus Luminescens To Support Growth and Reproduction of the Entomopathogenic Nematode Heterorhabditis Bacteriophora, Journal of Bacteriology, vol.183, issue.10, pp.3117-3143, 2001. ,
Dangerous Liaisons: The Symbiosis of Entomopathogenic Nematodes and Bacteria, Third International Symposium on Entomopathogenic Nematodes and Symbiotic Bacteria, vol.38, pp.22-46, 2006. ,
For the Insect Pathogen Photorhabdus Luminescens, Which End of a Nematode Is Out?, Applied and Environmental Microbiology, vol.69, issue.4, pp.1890-97, 2003. ,
Cell Invasion and Matricide during Photorhabdus Luminescens Transmission by Heterorhabditis Bacteriophora Nematodes, Applied and Environmental Microbiology, vol.74, issue.8, pp.2275-87, 2008. ,
Photorhabdus: A Model for the Analysis of Pathogenicity and Mutualism, Cellular Microbiology, vol.10, issue.11, pp.2159-67, 2008. ,
The Genetic Basis of the Symbiosis between Photorhabdus and Its Invertebrate Hosts, Advances in Applied Microbiology, vol.88, pp.1-29, 2014. ,
The Regulation of Secondary Metabolism in Photorhabdus, Current Topics in Microbiology and Immunology, vol.402, pp.81-102, 2017. ,
Virulence Mechanisms of Photorhabdus Sp. Strain K122 toward Wax Moth Larvae, Journal of Invertebrate Pathology, vol.66, issue.2, pp.149-55, 1995. ,
A DNA Methylation Ratchet Governs Progression through a Bacterial Cell Cycle, Proceedings of the National Academy of Sciences of the United States of America, vol.104, issue.43, pp.17111-17127, 2007. ,
DnaA Couples DNA Replication and the Expression of Two Cell Cycle Master Regulators, The EMBO Journal, vol.25, issue.2, pp.346-56, 2006. ,
Insecticidal Toxins from Photorhabdus Bacteria and Their Potential Use in Agriculture, Toxicon: Official Journal of the International Society on Toxinology, vol.49, issue.4, pp.436-51, 2007. ,
Developing Galleria Mellonella as a Model Host for Human Pathogens, Virulence, vol.4, issue.5, pp.350-53, 2013. ,
STM2209STM2208 (opvAB): A Phase Variation Locus of Salmonella Enterica Involved in Control of O-Antigen Chain Length, PLoS ONE, vol.7, issue.5, 2012. ,
OxyR-Dependent Formation of DNA Methylation Patterns in OpvABOFF and OpvABON Cell Lineages of Salmonella Enterica, Nucleic Acids Research, vol.44, issue.8, pp.3595-3609, 2016. ,
Epigenetic Control of Salmonella Enterica O-Antigen Chain Length: A Tradeoff between Virulence and Bacteriophage Resistance, PLoS Genetics, vol.11, issue.11, 2015. ,
Small Molecule Perimeter Defense in Entomopathogenic Bacteria, Proceedings of the National Academy of Sciences of the United States of America, vol.109, pp.10821-10847, 2012. ,
A Single Photorhabdus Gene, Makes Caterpillars Floppy (Mcf), Proceedings of the National Academy of Sciences of the United States of America, vol.99, issue.16, pp.10742-10789, 2002. ,
Salmonellae PhoPQ Regulation of the Outer Membrane to Resist Innate Immunity, Current Opinion in Microbiology, vol.17, pp.106-119, 2014. ,
Mismatch-, MutS-, MutL-, and Helicase II-Dependent Unwinding from the Single-Strand Break of an Incised Heteroduplex, The Journal of Biological Chemistry, vol.273, issue.15, pp.9202-9209, 1998. ,
On the Structure and Operation of Type I DNA Restriction enzymes11Edited by J. Karn, Journal of Molecular Biology, vol.290, issue.2, pp.565-79, 1999. ,
Entering the Era of Bacterial Epigenomics with Single Molecule Real Time DNA Sequencing, Current Opinion in Microbiology, vol.16, issue.2, pp.192-98, 2013. ,
Integrating DNA Methylation and Gene Expression Data in the Development of the SoybeanBradyrhizobium N2-Fixing Symbiosis, Frontiers in Microbiology, 2016. ,
What Do You Mean, Genetics, vol.199, issue.4, pp.887-96, 2015. ,
The Burst Size Distribution in the Growth of Bacterial Viruses (Bacteriophages)1, Journal of Bacteriology, vol.50, issue.2, pp.131-166, 1945. ,
DNA Adenine Methylation Is Required to Replicate Both Vibrio Cholerae Chromosomes Once per Cell Cycle, PLoS Genetics, vol.6, issue.5, p.1000939, 2010. ,
AstRAstS, a New Two-Component Signal Transduction System, Mediates Swarming, Adaptation to Stationary Phase and Phenotypic Variation in Photorhabdus Luminescens, Microbiology, pp.897-910, 2004. ,
The PhoP-PhoQ Two-Component Regulatory System of Photorhabdus Luminescens Is Essential for Virulence in Insects, Journal of Bacteriology, vol.186, issue.5, pp.1270-79, 2004. ,
Type III Secretion Systems: The Bacterial Flagellum and the Injectisome, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, vol.370, 1679. ,
,
Identification of a Pseudomonas aeruginosa PAO1 DNA Methyltransferase, Its Targets, and Physiological Roles, vol.8, pp.2312-2328, 2017. ,
Na+-Induced Transcription of nhaA, Which Encodes an Na+/H+ Antiporter in Escherichia Coli, Is Positively Regulated by nhaR and Affected by Hns, Journal of Bacteriology, vol.178, issue.22, pp.6508-6525, 1996. ,
Transcription of nhaA, the Main Na+/H+ Antiporter of Escherichia Coli, Is Regulated by Na+ and Growth Phase, Journal of Bacteriology, vol.183, issue.2, pp.644-53, 2001. ,
The Insecticidal Toxin Makes Caterpillars Floppy (Mcf) Promotes Apoptosis in Mammalian Cells, Cellular Microbiology, vol.6, issue.4, pp.345-53, 2004. ,
The Mcf1 Toxin Induces Apoptosis via the Mitochondrial Pathway and Apoptosis Is Attenuated by Mutation of the BH3-like Domain, Cellular Microbiology, vol.9, issue.10, pp.2470-84, 2007. ,
The in Vitro Assembly of the EcoKI Type I DNA Restriction/modification Enzyme and Its in Vivo Implications, Biochemistry, vol.36, issue.5, pp.1065-76, 1997. ,
The Genome Sequence of the Entomopathogenic Bacterium Photorhabdus Luminescens, Nature Biotechnology, vol.21, issue.11, pp.1307-1320, 2003. ,
DNA Rearrangements and Phenotypic Switching in Prokaryotes, Molecular Microbiology, vol.10, issue.3, pp.465-71, 1993. ,
Motility Is Required for the Competitive Fitness of Entomopathogenic Photorhabdus Luminescens during Insect Infection, BMC Microbiology, vol.8, p.168, 2008. ,
Real-Time DNA Sequencing from Single Polymerase Molecules, Science, vol.323, issue.5910, pp.133-171, 2009. ,
An Antibiotic Produced by an Insect-Pathogenic Bacterium Suppresses Host Defenses through Phenoloxidase Inhibition, Proceedings of the National Academy of Sciences of the United States of America, vol.104, issue.7, pp.2419-2443, 2007. ,
Comparative Analysis of Ralstonia Solanacearum Methylomes, Frontiers in Plant Science, vol.8, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01602628
Mutations within the Catalytic Motif of DNA Adenine Methyltransferase (Dam) of Aeromonas Hydrophila Cause the Virulence of the Dam-Overproducing Strain To Revert to That of the Wild-Type Phenotype, Infection and Immunity, vol.74, issue.10, pp.5763-72, 2006. ,
Opening the Iron Box: Transcriptional Metalloregulation by the Fur Protein, Journal of Bacteriology, vol.181, pp.6223-6252, 1920. ,
Overproduction of DNA Adenine Methyltransferase Alters Motility, Invasion, and the Lipopolysaccharide OAntigen Composition of Yersinia Enterocolitica, Infection and Immunity, vol.75, issue.10, pp.4990-97, 2007. ,
Genome-Wide Mapping of Methylated Adenine Residues in Pathogenic Escherichia Coli Using Single-Molecule Real-Time Sequencing, Nature Biotechnology, vol.30, issue.12, pp.1232-1271, 2012. ,
Phylogenies and Quantitative Characters, Annual Review of Ecology and Systematics, vol.19, issue.1, pp.445-71, 1988. ,
Self-Perpetuating States in Signal Transduction: Positive Feedback, Double-Negative Feedback and Bistability, Current Opinion in Cell Biology, vol.14, issue.2, pp.140-188, 2002. ,
DNA Binding of the Cell Cycle Transcriptional Regulator GcrA Depends on N6-Adenosine Methylation in Caulobacter Crescentus and Other Alphaproteobacteria, PLoS Genetics, vol.9, issue.5, p.1003541, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01110809
Direct Detection of DNA Methylation during Single-Molecule, Real-Time Sequencing, Nature Methods, vol.7, issue.6, pp.461-65, 2010. ,
Bacteria-Nematode Symbiosis, Entomopathogenic Nematology., 57. Gaugler, 2002. ,
Molecular Biology of the Symbiotic-Pathogenic Bacteria Xenorhabdus Spp. and Photorhabdus Spp, Microbiological Reviews, vol.60, issue.1, pp.21-43, 1996. ,
A Genomic Sequencing Protocol That Yields a Positive Display of 5-Methylcytosine Residues in Individual DNA Strands, Proceedings of the National Academy of Sciences of the United States of America, vol.89, issue.5, pp.1827-1858, 1992. ,
Restriction-Modification Systems as Mobile Epigenetic Elements, 2013. ,
Methylome Diversification through Changes in DNA Methyltransferase Sequence Specificity, PLoS Genetics, vol.10, issue.4, 2014. ,
Characterization of the Na+/H+ Antiporter from Yersinia Pestis, PLOS ONE, vol.6, issue.11, p.26115, 2011. ,
DNA Adenine Methylase Mutants of Salmonella Typhimurium Show Defects in Protein Secretion, Cell Invasion, and M Cell Cytotoxicity, Proceedings of the National Academy of Sciences of the United States of America, vol.96, pp.11578-83, 1920. ,
The Influence of Photorhabdus Luminescens Strains and Form Variants on the Reproduction and Bacterial Retention of Heterorhabditis Megidis, Fundamental and Applied Nematology, vol.20, issue.4, pp.317-339, 1997. ,
flhDC, the Flagellar Master Operon of Xenorhabdus Nematophilus: Requirement for Motility, Lipolysis, Extracellular Hemolysis, and Full Virulence in Insects, Journal of Bacteriology, vol.182, issue.1, pp.107-122, 2000. ,
Flagellar Regulation and Virulence in the Entomopathogenic Bacteria-Xenorhabdus Nematophila and Photorhabdus Luminescens, Current Topics in Microbiology and Immunology, vol.402, pp.39-51, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01604010
A Novel Tool for Stable Genomic Reporter Gene Integration to Analyze Heterogeneity in Photorhabdus Luminescens at the Single-Cell Level, BioTechniques, vol.59, issue.2, pp.74-81, 2015. ,
Virulence of the Nematode (Steinernematids and Heterorhabditis)-Bacteria (Xenorhabdus Spp.) Complex to the Egyptian Cotton Leafworm Spodoptera Littoralis (Lepidoptera: Noctuidae), Journal of Invertebrate Pathology, vol.57, issue.1, p.90045, 1991. ,
SPONTANEOUS MUTAGENESIS IN Escherichia Coli STRAINS LACKING 6-METHYLADENINE RESIDUES IN THEIR DNA, Mutation Research ,
Intracellular Survival Strategies of Mutualistic and Parasitic Prokaryotes, Trends in Microbiology, vol.9, issue.6, pp.267-73, 2001. ,
DNA Methylation by CcrM Activates the Transcription of Two Genes Required for the Division of Caulobacter Crescentus, Molecular Microbiology, vol.88, issue.1, pp.203-221, 2013. ,
The Functions of DNA Methylation by CcrM in Caulobacter Crescentus: A Global Approach, Nucleic Acids Research, vol.42, issue.6, pp.3720-3755, 2014. ,
Physiological Consequences of Blocked Caulobacter Crescentus dnaA Expression, an Essential DNA Replication Gene, Molecular Microbiology, vol.40, issue.2, pp.485-97, 2001. ,
Phase Variation of Ag43 in Escherichia Coli: Dam-Dependent Methylation Abrogates OxyR Binding and OxyR-Mediated Repression of Transcription, Molecular Microbiology, vol.35, issue.4, pp.877-87, 2000. ,
Playing Dr Jekyll and Mr Hyde: Combined Mechanisms of Phase Variation in Bacteria, Current Opinion in Microbiology, vol.4, issue.5, pp.570-81, 2001. ,
Pathogenicity, Development, and Reproduction of Heterorhabditis Bacteriophora and Steinernema Carpocapsae under Axenic in Vivo Conditions, Journal of Invertebrate Pathology, vol.75, issue.1, pp.55-58, 2000. ,
Effect of Photorhabdus Luminescens Phase Variants on the in Vivo and in Vitro Development and Reproduction of the Entomopathogenic Nematodes Heterorhabditis Bacteriophora and Steinernema Carpocapsae, FEMS Microbiology Ecology, vol.35, issue.3, pp.239-286, 2001. ,
Single-Molecule DNA Sequencing of a Viral Genome, Science, vol.320, pp.106-115, 2008. ,
SugE, a New Member of the SMR Family of Transporters, Contributes to Antimicrobial Resistance in Enterobacter Cloacae!, Antimicrobial Agents and Chemotherapy, vol.55, issue.8, pp.3954-57, 2011. ,
The Sequence of Sequencers: The History of Sequencing DNA, Genomics, vol.107, issue.1, pp.1-8, 2016. ,
An Essential Role for DNA Adenine Methylation in Bacterial Virulence, Science, vol.284, issue.5416, pp.967-70, 1999. ,
The Major Phase-Variable Outer Membrane Protein of Escherichia Coli Structurally Resembles the Immunoglobulin A1 Protease Class of Exported Protein and Is Regulated by a Novel Mechanism Involving Dam and OxyR, Journal of Bacteriology, vol.181, issue.7, pp.2132-2173, 1999. ,
Escherichia Coli K-12 Clones That Overproduce Dam Methylase Are Hypermutable, Journal of Bacteriology, vol.145, issue.1, pp.644-690, 1981. ,
Escherichia Coli Dam Methylase. Physical and Catalytic Properties of the Homogeneous Enzyme, Journal of Biological Chemistry, vol.257, issue.5, pp.2605-2617, 1982. ,
The Mechanism by Which DNA Adenine Methylase and PapI Activate the Pap Epigenetic Switch, Molecular Cell, vol.12, issue.4, pp.947-57, 2003. ,
DOI : 10.1016/s1097-2765(03)00383-6
URL : https://doi.org/10.1016/s1097-2765(03)00383-6
Self-Perpetuating Epigenetic Pili Switches in Bacteria, Proceedings of the National Academy of Sciences of the United States of America, vol.99, pp.16470-76, 2002. ,
DOI : 10.1073/pnas.182427199
URL : http://europepmc.org/articles/pmc139910?pdf=render
Roles of NhaA, NhaB, and NhaD Na+/H+ Antiporters in Survival of Vibrio Cholerae in a Saline Environment, Journal of Bacteriology, vol.185, issue.4, pp.1236-1280, 2003. ,
Pilin Gene Variation in Neisseria Gonorrhoeae: Reassessing the Old Paradigms, FEMS Microbiology Reviews, vol.33, issue.3, pp.521-551, 2009. ,
DOI : 10.1111/j.1574-6976.2009.00171.x
URL : https://academic.oup.com/femsre/article-pdf/33/3/521/18141851/33-3-521.pdf
Oscillating Global Regulators Control the Genetic Circuit Driving a Bacterial Cell Cycle, Science, vol.304, issue.5673, pp.983-87, 2004. ,
DOI : 10.1126/science.1095191
Molecular Models Accounting for the Gene Conversion Reactions Mediating Gonococcal Pilin Antigenic Variation, Molecular Microbiology, vol.37, issue.5, pp.1146-58, 2000. ,
DOI : 10.1046/j.1365-2958.2000.02067.x
URL : https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2958.2000.02067.x
Synergism of Dam, MutH, and MutS in Methylation-Directed Mismatch Repair in Escherichia Coli, Mutation Research, vol.795, pp.31-33, 2017. ,
Antibiotic Production in Relation to Bacterial Growth and Nematode Development in Photorhabdus-Heterorhabditis Infected Galleria Mellonella Larvae, FEMS Microbiology Letters, vol.189, issue.2, pp.219-242, 2000. ,
Methylation-Specific Digital Karyotyping, Nature Protocols, vol.1, issue.3, pp.1621-1657, 2006. ,
DOI : 10.1038/nprot.2006.278
WormBook: The Online Review of, C. Elegans Biology, 2007. ,
Biogenesis of the Bacterial Pilus, Current Opinion in Genetics & Development, vol.1, issue.3, p.80293, 1991. ,
DOI : 10.1016/s0959-437x(05)80293-x
DNA Adenine Methylation Changes Dramatically during Establishment of Symbiosis, The FEBS Journal, vol.274, issue.4, pp.951-62, 2007. ,
DOI : 10.1111/j.1742-4658.2007.05643.x
URL : https://febs.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1742-4658.2007.05643.x
Epigenetic Modification of Rhizobial Genome Is Essential for Efficient Nodulation, Biochemical and Biophysical Research Communications, vol.389, issue.2, pp.301-305, 2009. ,
DOI : 10.1016/j.bbrc.2009.08.137
DNA Mismatch Repair: Functions and Mechanisms, Chemical Reviews, vol.106, issue.2, pp.302-325, 2006. ,
DOI : 10.1002/chin.200620268
Cytosine Methylation and CpG, TpG (CpA) and TpA Frequencies, Gene, vol.333, pp.143-192, 2004. ,
DOI : 10.1016/j.gene.2004.02.043
Liquid Culture Mass Production of Biocontrol Nematodes, Heterorhabditis Bacteriophora (Nematoda: Rhabditida): Improved Timing of Dauer Juvenile Inoculation, Applied Microbiology and Biotechnology, vol.64, issue.5, pp.651-58, 2004. ,
Lambda Repressor and Cro-Components of an Efficient Molecular Switch, Nature, vol.294, issue.5838, pp.217-240, 1981. ,
DOI : 10.1038/294217a0
Fimbriae, Pili, Flagella and Bacterial Virulence, Contributions to Microbiology, vol.12, pp.67-89, 2005. ,
DOI : 10.1159/000081690
The Role of Motility as a Virulence Factor in Bacteria, International Journal of Medical Microbiology: IJMM, vol.291, issue.8, pp.605-619, 2002. ,
Bacterial Biosynthesis of a Multipotent Stilbene, International Ed. in English), vol.47, issue.10, pp.1942-1987, 2008. ,
,
A hexA Homologue from Photorhabdus Regulates Pathogenicity, Symbiosis and Phenotypic Variation, Molecular Microbiology, vol.47, issue.5, pp.1445-57, 2003. ,
The Regulation of Pathogenicity and Mutualism in Photorhabdus, Current Opinion in Microbiology, vol.9, issue.2, pp.127-159, 2006. ,
FliZ Is a Global Regulatory Protein Affecting the Expression of Flagellar and Virulence Genes in Individual Xenorhabdus nematophila Bacterial Cells, PLoS Genetics, vol.9, issue.10, p.1003915, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01190077
Cycle Inhibiting Factors (CIFs) Are a Growing Family of Functional Cyclomodulins Present in Invertebrate and Mammal Bacterial Pathogens, PloS One, vol.4, issue.3, 2009. ,
DNA Adenine Methylase Is Essential for Viability and Plays a Role in the Pathogenesis of Yersinia Pseudotuberculosis and Vibrio Cholerae, Infection and Immunity, vol.69, issue.12, pp.7610-7625, 2001. ,
DNA Adenine Methylase Overproduction in Yersinia Pseudotuberculosis Alters YopE Expression and Secretion and Host Immune Responses to Infection, Infection and Immunity, vol.70, issue.2, pp.1006-1015, 2002. ,
Genomics of DNA Cytosine Methylation in Escherichia Coli Reveals Its Role in Stationary Phase Transcription, Nature Communications, vol.3, p.886, 2012. ,
Specific Binding of PapI to Lrp-Pap DNA Complexes, Journal of Bacteriology, vol.177, issue.22, pp.6449-55, 1995. ,
Regulation of the Replication Cycle: Conserved and Diverse Regulatory Systems for DnaA and oriC, Nature Reviews. Microbiology, vol.8, issue.3, pp.163-70, 2010. ,
Structure and Operation of the DNA-Translocating Type I DNA Restriction Enzymes, Genes & Development, vol.26, issue.1, pp.92-104, 2012. ,
Evidence for an Instructive Mechanism of de Novo Methylation in Cancer Cells, Nature Genetics, vol.38, issue.2, pp.149-53, 2006. ,
Global Methylation State at Base-Pair Resolution of the Caulobacter Genome throughout the Cell Cycle, Proceedings of the National Academy of Sciences of the United States of America, vol.110, issue.48, pp.4658-4667, 2013. ,
The Complex Methylome of the Human Gastric Pathogen Helicobacter Pylori, Nucleic Acids Research, vol.42, issue.4, pp.2415-2447, 2014. ,
Comparative Transcriptomics of H. Pylori Strains AM5, SS1 and Their hpyAVIBM Deletion Mutants: Possible Roles of Cytosine Methylation, PloS One, vol.7, issue.8, p.42303, 2012. ,
Mutations in hpyAVIBM, C5 Cytosine DNA Methyltransferase from Helicobacter Pylori Result in Relaxed Specificity, The FEBS Journal, vol.279, issue.6, pp.1080-92, 2012. ,
N4-Cytosine DNA Methylation Regulates Transcription and Pathogenesis in Helicobacter Pylori, Nucleic Acids Research, vol.46, issue.7, pp.3429-3474, 2018. ,
Insect Pathogens as Biological Control Agents: Back to the Future, Journal of Invertebrate Pathology, vol.132, pp.1-41, 2015. ,
DNA Mismatch Correction in a Defined System, Science, vol.245, issue.4914, pp.160-64, 1989. ,
Photorhabdus Luminescens Toxins TccC3 and TccC5 Affect the Interaction of Actin with ActinBinding Proteins Essential for Treadmilling, Current Topics in Microbiology and Immunology, vol.399, pp.53-67, 2017. ,
HexA Is a Versatile Regulator Involved in the Control of Phenotypic Heterogeneity of Photorhabdus Luminescens, PloS One, vol.12, issue.4, 2017. ,
A Metabolic Switch Is Involved in Lifestyle Decisions in Photorhabdus Luminescens, Molecular Microbiology, vol.77, issue.6, pp.1394-1405, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00560774
Transcriptional Analysis of a Photorhabdus Sp. Variant Reveals Transcriptional Control of Phenotypic Variation and Multifactorial Pathogenicity in Insects, Applied and Environmental Microbiology, vol.77, issue.3, pp.1009-1029, 2011. ,
Genes Directly Controlled by CtrA, a Master Regulator of the Caulobacter Cell Cycle, Proceedings of the National Academy of Sciences of the United States of America, vol.99, issue.7, pp.4632-4669, 2002. ,
Establishing, Maintaining and Modifying DNA Methylation Patterns in Plants and Animals, Nature Reviews. Genetics, vol.11, issue.3, pp.204-224, 2010. ,
Epigenetic Regulation of Intragenic Transposable Elements Impacts Gene Transcription in Arabidopsis Thaliana, Nucleic Acids Research, vol.43, issue.8, pp.3911-3932, 2015. ,
MutH Complexed with Hemi-and Unmethylated DNAs: Coupling Base Recognition and DNA Cleavage, Molecular Cell, vol.20, issue.1, pp.155-66, 2005. ,
Molecular Characterization of the Na+/H+-Antiporter NhaA from Salmonella Typhimurium, PLOS ONE, vol.9, issue.7, p.101575, 2014. ,
The Conserved nhaAR Operon Is Drastically Divergent between B2 and Non-B2 Escherichia Coli and Is Involved in Extra-Intestinal Virulence, PloS One, vol.9, issue.9, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01366321
Expression and Activity of a Probable Toxin from Photorhabdus Luminescens, Molecular Biology Reports, vol.36, issue.4, pp.785-90, 2009. ,
Complete Genome Sequence and Methylome Analysis of Aeromonas Hydrophila Strain YL17, Isolated from a Compost Pile, Genome Announcements, vol.4, issue.2, 2016. ,
,
Structural Insights into the Cytotoxic Mechanism of Vibrio Parahaemolyticus PirAvp and PirBvp Toxins, Marine Drugs, vol.15, issue.12, 2017. ,
Highlights of the DNA Cutters: A Short History of the Restriction Enzymes, Nucleic Acids Research, vol.42, issue.1, pp.3-19, 2014. ,
The Other Face of Restriction: Modification-Dependent Enzymes, Nucleic Acids Research, vol.42, issue.1, pp.56-69, 2014. ,
Crosstalk between Virulence Loci: Regulation of Salmonella Enterica Pathogenicity Island 1 (SPI-1) by Products of the Std Fimbrial Operon, PloS One, vol.7, issue.1, p.30499, 2012. ,
Whole-Genome-Based Revisit of Photorhabdus Phylogeny: Proposal for the Elevation of Most Photorhabdus Subspecies to the Species Level and Description of One Novel Species Photorhabdus Bodei Sp. Nov., and One Novel Subspecies Photorhabdus Laumondii Subsp. Clarkei Subsp. Nov, International Journal of Systematic and Evolutionary Microbiology, vol.68, issue.8, pp.2664-81, 2018. ,
Resistance to Plasmopara Viticola in a Grapevine Segregating Population Is Associated with Stilbenoid Accumulation and with Specific Host Transcriptional Responses, BMC Plant Biology, vol.11, p.114, 2011. ,
Chromosome Methylation and Measurement of Faithful, Once and Only Once per Cell Cycle Chromosome Replication in Caulobacter Crescentus, Journal of Bacteriology, vol.181, issue.7, pp.1984-93, 1999. ,
Correlation of DNA Adenine Methylase Activity with Spontaneous Mutability in Escherichia Coli K-12, Gene, vol.28, issue.1, pp.123-148, 1984. ,
DNA Methylation and Mutator Genes in Escherichia Coli K-12, Mutation Research, vol.705, issue.2, pp.71-76, 2010. ,
Roles of DNA Adenine Methylation in Host-Pathogen Interactions: Mismatch Repair, Transcriptional Regulation, and More, FEMS Microbiology Reviews, vol.33, issue.3, pp.488-503, 2009. ,
A New Method for Sequencing DNA, Proceedings of the National Academy of Sciences of the United States of America, vol.74, issue.2, pp.560-64, 1977. ,
A Dam Methylation Mutant of Klebsiella Pneumoniae Is Partially Attenuated, FEMS Microbiology Letters, vol.268, issue.2, pp.187-93, 2007. ,
In Vivo Expression of the Mannose-Resistant Fimbriae of Photorhabdus Temperata K122 during Insect Infection, Journal of Bacteriology, vol.186, issue.3, pp.611-633, 2004. ,
Effect of Dam Methylation on the Activity of the E. Coli Replication Origin, oriC, The EMBO Journal, vol.4, issue.5, pp.1327-1359, 1985. ,
Cytosine DNA Methylation Influences Drug Resistance in Escherichia Coli through Increased sugE Expression, FEMS Microbiology Letters, vol.350, issue.1, pp.100-106, 2014. ,
Conservation of Dcm-Mediated Cytosine DNA Methylation in Escherichia Coli, FEMS Microbiology Letters, vol.328, issue.1, pp.78-85, 2012. ,
Na+/H+ Antiport Is Essential for Yersinia Pestis Virulence, Infection and Immunity, vol.81, issue.9, pp.3163-72, 2013. ,
DNA Methylation in Caulobacter and Other Alphaproteobacteria during Cell Cycle Progression, Trends in Microbiology, vol.22, issue.9, pp.528-563, 2014. ,
DNA Replication Initiation: Mechanisms and Regulation in Bacteria, Nature Reviews. Microbiology, vol.5, issue.5, pp.343-54, 2007. ,
An Antimicrobial PeptideResistant Minor Subpopulation of Photorhabdus Luminescens Is Responsible for Virulence, Scientific Reports, vol.7, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01606548
From Insect to Man: Photorhabdus Sheds Light on the Emergence of Human Pathogenicity, PloS One, vol.10, issue.12, 2015. ,
The Methylomes of Six Bacteria, Nucleic Acids Research, vol.40, issue.22, pp.11450-62, 2012. ,
Type I Restriction Systems: Sophisticated Molecular Machines (a Legacy of Bertani and Weigle), Microbiology and Molecular Biology Reviews: MMBR, vol.64, issue.2, pp.412-446, 2000. ,
How the Insect Pathogen Bacteria Bacillus Thuringiensis and Xenorhabdus/Photorhabdus Occupy Their Hosts, Current Opinion in Microbiology, vol.15, issue.3, pp.220-251, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01004177
SeqA Blocking of DnaA-oriC Interactions Ensures Staged Assembly of the E. Coli Pre-RC, Molecular Cell, vol.24, issue.4, pp.581-92, 2006. ,
The Structure and Function of Type III Secretion Systems, Microbiology Spectrum, vol.4, issue.1, 2016. ,
,
Regulation of Pyelonephritis-Associated Pili Phase-Variation in Escherichia Coli: Binding of the PapI and the Lrp Regulatory Proteins Is Controlled by DNA Methylation, Molecular Microbiology, vol.7, issue.4, pp.545-53, 1993. ,
Molecular Basis of Escherichia Coli Colonization of the Upper Urinary Tract in BALB/c Mice. Gal-Gal Pili Immunization Prevents Escherichia Coli Pyelonephritis in the BALB/c Mouse Model of Human Pyelonephritis, The Journal of Clinical Investigation, vol.75, issue.2, pp.347-60, 1985. ,
Mammalian Cytosine Methylation at a Glance, Journal of Cell Science, vol.122, pp.2787-91, 2009. ,
Genome-Wide Analysis of Deoxyadenosine Methyltransferase-Mediated Control of Gene Expression in Escherichia Coli, Molecular Microbiology, vol.45, issue.3, pp.673-95, 2002. ,
Roles for Motility in Bacterial-Host Interactions, Molecular Microbiology, vol.24, issue.6, pp.1109-1126, 1997. ,
Deletion of Ant in Escherichia Coli Reveals Its Function in Adaptation to High Salinity and an Alternative Na+/H+ Antiporter System(s), The Journal of Biological Chemistry, vol.264, issue.34, pp.20297-302, 1989. ,
Repair of DNA Heteroduplexes Containing Small Heterologous Sequences in Escherichia Coli, Proceedings of the National Academy of Sciences, vol.89, issue.5, pp.1730-1764, 1992. ,
Symbionts and Pathogens: What Is the Difference?, Current Topics in Microbiology and Immunology, vol.358, pp.215-258, 2013. ,
Type II Restriction Endonucleases, Methods, vol.28, issue.3, pp.353-64, 2002. ,
Cleavage and Methylation of DNA by the Restriction Endonuclease HinfIII Isolated from Haemophilus Influenzae Rf, Journal of Molecular Biology, vol.144, issue.4, pp.90329-90329, 1980. ,
Type II Restriction Endonucleases: Structure and Mechanism, Cellular and Molecular Life Sciences: CMLS, vol.62, issue.6, pp.685-707, 2005. ,
Recognition and Cleavage of DNA by Type-II Restriction Endonucleases, European Journal of Biochemistry, vol.246, issue.1, pp.1-22, 1997. ,
Type II Restriction Endonucleases-a Historical Perspective and More, Nucleic Acids Research, vol.42, issue.12, pp.7489-7527, 2014. ,
Physiological Role of nhaB, a Specific Na+/H+ Antiporter in Escherichia Coli, The Journal of Biological Chemistry, vol.268, issue.3, pp.1729-1763, 1993. ,
Cloning, Sequencing, and Expression of the nhaB Gene, Encoding a Na+/H+ Antiporter in Escherichia Coli, The Journal of Biological Chemistry, vol.267, issue.16, pp.11064-68, 1992. ,
Genome-Wide Methylation Patterns in Salmonella Enterica Subsp. Enterica Serovars, PloS One, vol.10, issue.4, 2015. ,
Effects of High Levels of DNA Adenine Methylation on Methyl-Directed Mismatch Repair in Escherichia Coli, Genetics, vol.104, issue.4, pp.571-82, 1983. ,
Lipid A Modification Systems in Gram-Negative Bacteria, Annual Review of Biochemistry, vol.76, pp.295-329, 2007. ,
Type III Restriction-Modification Enzymes: A Historical Perspective, Nucleic Acids Research, vol.42, issue.1, pp.45-55, 2014. ,
High-Resolution Mapping of DNA Hypermethylation and Hypomethylation in Lung Cancer, Proceedings of the National Academy of Sciences of the United States of America, vol.105, issue.1, pp.252-57, 2008. ,
MIRA-Assisted Microarray Analysis, a New Technology for the Determination of DNA Methylation Patterns, Identifies Frequent Methylation of Homeodomain-Containing Genes in Lung Cancer Cells, Cancer Research, vol.66, issue.16, pp.7939-7986, 2006. ,
Analysis of Global Gene Expression and Double-Strand-Break Formation in DNA Adenine Methyltransferase-and Mismatch Repair-Deficient Escherichia Coli, Journal of Bacteriology, vol.187, issue.20, pp.7027-7064, 2005. ,
A Nomenclature for Restriction Enzymes, DNA Methyltransferases, Homing Endonucleases and Their Genes, Nucleic Acids Research, vol.31, issue.7, pp.1805-1817, 2003. ,
REBASE-a Database for DNA Restriction and Modification: Enzymes, Genes and Genomes, Nucleic Acids Research, vol.38, pp.234-236, 2010. ,
A Dam Mutant of Yersinia Pestis Is Attenuated and Induces Protection against Plague, FEMS Microbiology Letters, vol.252, issue.2, pp.251-56, 2005. ,
Toxins and Secretion Systems of Photorhabdus Luminescens, Toxins, vol.2, issue.6, pp.1250-64, 2010. ,
A Sequencing Method Based on Real-Time Pyrophosphate, Science, vol.281, issue.5375, p.365, 1998. ,
Molecular Biology of the LysR Family of Transcriptional Regulators, Annual Review of Microbiology, vol.47, pp.597-626, 1993. ,
Cro's Role in the CI-Cro Bistable Switch Is Critical for ?'s Transition from Lysogeny to Lytic Development, Genes & Development, vol.21, pp.2461-72, 2007. ,
Microarray-Based DNA Methylation Profiling: Technology and Applications, Nucleic Acids Research, vol.34, issue.2, pp.528-570, 2006. ,
What Is Type VI Secretion Doing in All Those Bugs?, Trends in Microbiology, vol.18, issue.12, pp.531-568, 2010. ,
GUIDANCE2: Accurate Detection of Unreliable Alignment Regions Accounting for the Uncertainty of Multiple Parameters, Nucleic Acids Research, vol.43, issue.W1, pp.7-14, 2015. ,
Methylome Analysis of Two Xanthomonas Spp. Using Single-Molecule Real-Time Sequencing, The Plant Pathology Journal, vol.32, issue.6, pp.500-507, 2016. ,
Insecticidal Toxin Complexes from Photorhabdus Luminescens, Current Topics in Microbiology and Immunology, vol.402, pp.3-23, 2017. ,
Insecticidal Toxin Complex Proteins from Xenorhabdus Nematophilus: Structure and Pore Formation, The Journal of Biological Chemistry, vol.286, issue.26, pp.22742-22791, 2011. ,
Stages of Infection during the Tripartite Interaction between Xenorhabdus Nematophila, Its Nematode Vector, and Insect Hosts, Applied and Environmental Microbiology, vol.70, issue.11, pp.6473-80, 2004. ,
E. Coli SeqA Protein Binds oriC in Two Different Methyl-Modulated Reactions Appropriate to Its Roles in DNA Replication Initiation and Origin Sequestration, Cell, vol.82, issue.6, pp.927-963, 1995. ,
URL : https://hal.archives-ouvertes.fr/hal-01880982
Phase Variation in Xenorhabdus Nematophilus and Photorhabdus Luminescens: Differences in Respiratory Activity and Membrane Energization, Applied and Environmental Microbiology, vol.60, issue.1, pp.120-145, 1994. ,
Pseudomonad Replication Origins: A Paradigm for Bacterial Origins?, Molecular Microbiology, vol.5, issue.11, pp.2581-87, 1991. ,
Photorhabdus Phase Variants Express a Novel Fimbrial Locus, Mad, Essential for Symbiosis, Molecular Microbiology, vol.77, issue.4, pp.1021-1059, 2010. ,
A Single Promoter Inversion Switches Photorhabdus between Pathogenic and Mutualistic States, Science, vol.337, issue.6090, pp.88-93, 2012. ,
Bacterial Adhesins: Common Themes and Variations in Architecture and Assembly, Journal of Bacteriology, vol.181, issue.4, pp.1059-71, 1999. ,
Characterization of a Novel Type IV Pilus Locus Encoded on the Large Plasmid of Locus of Enterocyte Effacement-Negative Shiga-Toxigenic Escherichia Coli Strains That Are Virulent for Humans, Infection and Immunity, vol.70, issue.6, pp.3094-3100, 2002. ,
Epigenetic Influence of Dam Methylation on Gene Expression and Attachment in Uropathogenic Escherichia Coli, Frontiers in Public Health, vol.4, 2016. ,
Immunochemical Detection of N6Methyladenine in DNA, Biochimica Et Biophysica Acta, vol.564, issue.1, pp.23-30, 1979. ,
Oral Immunization with a Dam Mutant of Yersinia Pseudotuberculosis Protects against Plague, Microbiology, pp.1919-1945, 2005. ,
Families of Restriction Enzymes: An Analysis Prompted by Molecular and Genetic Data for Type ID Restriction and Modification Systems, Nucleic Acids Research, vol.29, issue.20, pp.4195-4205, 2001. ,
Genome Comparisons Provide Insights into the Role of Secondary Metabolites in the Pathogenic Phase of the Photorhabdus Life Cycle, BMC Genomics, vol.17, issue.1, p.537, 2016. ,
DNA Adenine Methylase Mutants of Salmonella Typhimurium and a Novel Dam-Regulated Locus, Genetics, vol.144, issue.1, pp.15-26, 1996. ,
Proteome Analysis of the Phenotypic Variation Process in Photorhabdus Luminescens, Proteomics, vol.6, issue.9, pp.2705-2730, 2006. ,
Host and Penetration Site Location by Entomopathogenic Nematodes against Japanese Beetle Larvae, Journal of Invertebrate Pathology, vol.72, issue.3, pp.313-331, 1998. ,
Inviability of Dam recA and Dam recB Cells of Escherichia Coli Is Correlated with Their Inability to Repair DNA Double-Strand Breaks Produced by Mismatch Repair, Journal of Bacteriology, vol.165, issue.3, pp.1023-1048, 1986. ,
Potentiation and Cellular Phenotypes of the Insecticidal Toxin Complexes of Photorhabdus Bacteria, Cellular Microbiology, vol.7, issue.3, pp.373-82, 2005. ,
The Photorhabdus Pir Toxins Are Similar to a Developmentally Regulated Insect Protein but Show No Juvenile Hormone Esterase Activity, FEMS Microbiology Letters, vol.245, issue.1, pp.47-52, 2005. ,
Genomic Islands in Photorhabdus, Trends in Microbiology, vol.10, issue.12, pp.541-586, 2002. ,
The Insecticidal Toxin Makes Caterpillars Floppy 2 (Mcf2) Shows Similarity to HrmA, an Avirulence Protein from a Plant Pathogen, FEMS Microbiology Letters, vol.229, issue.2, pp.265-70, 2003. ,
Regulatory RNAs in Bacteria, Cell, vol.136, issue.4, pp.615-643, 2009. ,
Inactivation of Deoxyadenosine Methyltransferase (Dam) Attenuates Haemophilus Influenzae Virulence, Molecular Microbiology, vol.53, issue.2, pp.651-64, 2004. ,
The exbD Gene of Photorhabdus Temperata Is Required for Full Virulence in Insects and Symbiosis with the Nematode Heterorhabditis, Molecular Microbiology, vol.56, issue.3, pp.763-73, 2005. ,
Chromosome-Wide and Promoter-Specific Analyses Identify Sites of Differential DNA Methylation in Normal and Transformed Human Cells, Nature Genetics, vol.37, issue.8, pp.853-62, 2005. ,
Isolation and Characterization of the Escherichia Coli mutH Gene Product, The Journal of Biological Chemistry, vol.262, issue.32, pp.15624-15653, 1987. ,
Biosynthesis and Export of Bacterial Lipopolysaccharides, Annual Review of Biochemistry, vol.83, pp.99-128, 2014. ,
Finished Genome Sequence and Methylome of the Cyanide-Degrading Pseudomonas Pseudoalcaligenes Strain CECT5344 as Resolved by Single-Molecule Real-Time Sequencing, Bioinformatics for Biotechnology and Biomedicine, vol.232, pp.61-68, 2016. ,
N6-Methyl-Adenine: An Epigenetic Signal for DNA-Protein Interactions, Nature Reviews. Microbiology, vol.4, issue.3, pp.183-92, 2006. ,
URL : https://hal.archives-ouvertes.fr/inserm-00390766
Epigenetic Phase Variation of the Pap Operon in Escherichia Coli, Trends in Microbiology, vol.4, issue.1, pp.5-9, 1996. ,
Inactivation of DNA Adenine Methyltransferase Alters Virulence Factors in Actinobacillus Actinomycetemcomitans, Oral Microbiology and Immunology, vol.21, issue.4, pp.238-282, 2006. ,
BSMAP: Whole Genome Bisulfite Sequence MAPping Program, BMC Bioinformatics, vol.10, p.232, 2009. ,
CpG Island Arrays: An Application toward Deciphering Epigenetic Signatures of Breast Cancer, Clinical Cancer Research: An Official Journal of the American Association for Cancer Research, vol.6, issue.4, pp.1432-1470, 2000. ,
Photorhabdus Virulence Cassettes Confer Injectable Insecticidal Activity against the Wax Moth, Journal of Bacteriology, vol.188, issue.6, pp.2254-61, 2006. ,
A Mimicking-of-DNA-Methylation-Patterns Pipeline for Overcoming the Restriction Barrier of Bacteria, PLoS Genetics, vol.8, issue.9, 2012. ,
,
Genome-Wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis, Cell, vol.126, issue.6, pp.1189-1201, 2006. ,
The Cytotoxin YopT of Yersinia Enterocolitica Induces Modification and Cellular Redistribution of the Small GTP-Binding Protein RhoA, The Journal of Biological Chemistry, vol.274, issue.41, pp.29289-93, 1999. ,
A Caulobacter DNA Methyltransferase That Functions Only in the Predivisional Cell, Journal of Molecular Biology, vol.235, issue.2, pp.472-85, 1994. ,