A. Dolet, F. Varray, S. Mure, T. Grenier, Y. Liu et al., Discrimination of media with multispectral photoacoustic imaging using an unsupervised unmixing method. The Artimino Conference on, Spectrophotometry and photoacoustic imaging: a comparative study. IRBM, vol.39, pp.352-356, 2016.

P. A. Biomedical, Illuminating the principles of acoustic radiation created 4H by optical excitation (M. C. Kolios at 2016 IEEE IUS) 2015 Ultrasound courses (Master ISM), p.20

, Workshops and seminars 2016 (June) OPtical and UltraSound imaging (OPUS)

, Imagerie hyperspectrale : quelle données ? Quels traitements ? 1 day Quelles applications ?

, PEP UP: Lean Empowerment for future PhDs 20H 2017 (March to May) Italian courses (Level B1 graduation, p.60

, Teaching activities 2015-2018 JAVA programmation PhD teacher 192H INSA Lyon -Premier Cycle

, Theaching, evaluating project, writting and correcting exams. Participation to teaching meeting and update of laboratory subjects

, Financial support for PhD co-supervision, 2016.

, Rhône-Alpes nancial support

, Financial support for PhD co-supervision (CMIRA: Explora DOC)

, Awards Ma thèse en 180 secondes 2018 Regional laureate L'Oréal-UNESCO For Women in Science 2017 In the 300 talented women 2017 L'Oréal-UNESCO For Women in Science (among more than 1000 women for 30 laureates)

, Aneline DOLET 105

R. Ammanouil, A. Ferrari, C. Richard, and D. Mary, Blind and fully constrained unmixing of hyperspectral images, IEEE Transactions on Image Processing, vol.23, issue.12, pp.5510-5518, 2014.

B. A. Angelsen, Ultrasound imaging : waves, signals, and signal processing. 2. propagation and scattering in heterogeneous, nonlinear tissue with contrast agent imaging and doppler measurements, Ultrasound imaging, Emantec, 2000.

R. Ansari, E. Zhang, S. Mathews, A. E. Desjardins, and P. C. Beard, Photoacoustic Endoscopy Probe Using a Coherent Fibre Optic Bundle. International Society for Optics and Photonics, p.12, 2015.

M. U. Arabul, H. M. Heres, M. C. Rutten, M. R. Van-sambeek, F. N. Van-de-vosse et al., Ex Vivo Photoacoustic Imaging of Atherosclerotic Carotid Plaques, 2015.

, IEEE International Ultrasonics Symposium (IUS), p.14, 2015.

M. U. Arabul, H. M. Heres, M. C. Rutten, M. R. Van-sambeek, H. F. Van-de-vosse et al., Investigation of the Eects of Multi-Angle Compounding in Photoacoustic Imaging, IEEE International Ultrasonics Symposium (IUS), vol.10, p.13, 2016.

C. J. Arthuis, A. Novell, F. Raes, J. M. Escore, S. Lerondel et al., Real-Time Monitoring of Placental Oxygenation during Maternal Hypoxia and Hyperoxygenation Using Photoacoustic Imaging, PLOS ONE, vol.12, issue.1, pp.169850-016985011, 2017.

D. R. Bauer, R. Olafsson, L. G. Montilla, and R. S. Witte, In Vivo Multi-Modality Photoacoustic and Pulse Echo Tracking of Prostate Tumor Growth Using a Window Chamber, Proc. SPIE, vol.7564, p.75643, 2010.

P. C. Beard and T. N. Mills, Characterization of Post Mortem Arterial Tissue Using TimeResolved Photoacoustic Spectroscopy at 436, 461 and 532 Nm, Physics in Medicine and Biology, vol.42, issue.1, p.177198, 1997.

P. Beard, Biomedical photoacoustic imaging. Interface Focus, vol.1, issue.9, p.602631, 2011.

M. F. Beckmann, H. Schwab, and G. Schmitz, Multispectral Photoacoustic Coded Excitation with low PRF High Power Laser Diodes, IEEE International Ultrasonics Symposium (IUS), p.12, 2014.

A. G. Bell, Upon the Production and Reproduction of Sound by Light, Journal of the Society of Telegraph Engineers, vol.9, issue.34, p.404426, 1880.

P. Boulos, Ultrasound imaging of the ultrasound thrombolysis, p.29, 2017.
URL : https://hal.archives-ouvertes.fr/tel-01707502

, Aneline DOLET, vol.107

;. H. Bibliography, R. Brecht, M. Su, S. A. Fronheiser, A. Ermilov et al., Whole-Body Three-Dimensional Optoacoustic Tomography System for Small Animals, Journal of Biomedical Optics, vol.14, issue.6, p.64007, 2009.

X. Cai, C. Kim, M. Pramanik, and L. V. Wang, Photoacoustic tomography of foreign bodies in soft biological tissue, Journal of Biomedical Optics, vol.16, issue.4, p.04601710460174, 2011.

R. F. Castelino, W. M. Whelan, and M. C. Kolios, Photoacoustic Detection of Protein Coagulation in Albumen-Based Phantoms. International Society for Optics and Photonics, p.68562668562628, 2008.

M. Ciancone, K. Mebrouk, N. Bellec, C. L. Go-gaillard, Y. Arlot-bonnemains et al., Biocompatible nanoparticles containing hydrophobic nickel-bis(dithiolene) complexes for NIR-mediated doxorubicin release and photothermal therapy, Journal of materials chemistry B, vol.6, issue.12, p.99, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01771086

B. T. Cox, J. G. Laufer, P. C. Beard, and S. R. Arridge, Quantitative Spectroscopic Photoacoustic Imaging: A Review, Journal of Biomedical Optics, vol.17, issue.6, p.13, 2012.

V. Daeichin, M. Wu, N. Jong, A. F. Van-der-steen, and G. Van-soest, Frequency Analysis of the Photoacoustic Signal Generated by Coronary Atherosclerotic Plaque, Ultrasound in Medicine and Biology, vol.42, issue.8, p.14, 2016.

X. L. Deán-ben, E. Bay, and D. Razansky, Functional Optoacoustic Imaging of Moving Objects Using Microsecond-Delay Acquisition of Multispectral Three-Dimensional Tomographic Data, Scientic Reports, vol.4, p.5878, 2014.

L. Dice, Measures of the Amount of Ecologic Association Between Species. Ecology, vol.26, issue.3, p.49, 1945.

L. Ding, X. L. Deán-ben, and D. Razansky, Ecient 3D Model-Based Reconstruction Scheme for Arbitrary Optoacoustic Acquisition Geometries, IEEE Transactions on Medical Imaging, vol.36, issue.9, p.18581867, 2017.

A. Dixon, J. Farry, J. Chen, A. H. Dhanaliwala, J. A. Hossack et al., Photoacoustic Imaging of Stimuli-Responsive Red Blood Cell Drug Delivery Agents, IEEE International Ultrasonics Symposium (IUS), p.13, 2016.

A. Dolet, F. Varray, E. Roméo, T. Dehoux, and D. Vray, Spectrophotometry and Photoacoustic Imaging: A Comparative Study. IRBM, vol.38, p.352356, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01693714

A. Dolet, F. Varray, S. Mure, T. Grenier, Y. Liu et al., Spatial and Spectral Regularization to Discriminate Tissues Using Multispectral Photoacoustic Imaging
URL : https://hal.archives-ouvertes.fr/hal-01909562

, EURASIP Journal on Advances in Signal Processing, vol.39, issue.1, p.110, 2018.

. Aneline, ;. A. Bibliography, and . Dubois, Imagerie optique des milieux biologiques. Cours biophotonique, Palaiseau, Institut d'Optique Graduate School, 2007.

F. A. Duck, Physical properties of tissue: a comprehensive reference book, 1990.

R. O. Esenaliev, A. A. Karabutov, F. K. Tittel, B. D. Fornage, S. L. Thomsen et al., Laser Optoacoustic Imaging for Breast Cancer Diagnostics: Limit of Detection and Comparison with X-Ray and Ultrasound Imaging, Optical Tomography and Spectroscopy of Tissue: Theory, Instrumentation, Model, and Human Studies II, 1997.

M. Gasse, F. Millioz, E. Roux, D. Garcia, H. Liebgott et al., High-Quality Plane Wave Compounding using Convolutional Neural Networks, Ferroelectricity and Frequency Control, vol.64, issue.10, p.16371639, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01596034

J. Glatz, N. C. Deliolanis, A. Buehler, D. Razansky, and V. Ntziachristos, Blind source unmixing in multi-spectral optoacoustic tomography, Optics Express, vol.19, issue.4, p.31753184, 2011.

D. C. Heinz and C. , Fully constrained least squares linear spectral mixture analysis method for material quantication in hyperspectral imagery, IEEE Transactions on Geoscience and Remote Sensing, vol.39, issue.3, p.68, 2001.

E. R. Hill, W. Xia, D. I. Nikitichev, K. Gurusamy, P. C. Beard et al., Interventional multi-spectral photoacoustic imaging in laparoscopic surgery, vol.9, p.97080, 2016.

K. Jansen, M. Wu, A. F. Van-der-steen, and G. Van-soest, Lipid detection in atherosclerotic human coronaries by spectroscopic intravascular photoacoustic imaging, Optics Express, vol.21, issue.18, p.2147221484, 2013.

, Keshava and J. F. Mustard. Spectral unmixing. IEEE Signal Processing Magazine, vol.19, issue.1, p.4457, 2002.

L. B. Kreuzer, Ultralow Gas Concentration Infrared Absorption Spectroscopy, Journal of Applied Physics, vol.42, issue.7, p.29342943, 1971.

P. Kruizinga, A. F. Van-der-steen, N. Jong, G. Springeling, J. L. Robertus et al., Photoacoustic Imaging of Carotid Artery Atherosclerosis, Journal of Biomedical Optics, vol.19, issue.11, p.14, 2014.

S. Leclerc, T. Grenier, F. Espinoza, and O. Bernard, A fully automatic and multi-structural segmentation of the left ventricle and the myocardium on highly heterogeneous 2D echocardiographic data, IEEE International Ultrasonics Symposium (IUS), vol.100, p.14, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01609235

C. Li and L. V. Wang, Photoacoustic Tomography and Sensing in Biomedicine, Physics in Medicine and Biology, vol.54, issue.19, p.5997, 2009.

, Aneline DOLET 109

S. Li, B. Montcel, Z. Yuan, W. Liu, and D. Vray, Multigrid-based reconstruction algorithm for quantitative photoacoustic tomography, Biomedical Optics Express, vol.6, issue.7, p.24242434, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01179827

Y. Liu, D. Li, and Z. Yuan, Photoacoustic Tomography Imaging of the Adult Zebrash by Using Unfocused and Focused High-Frequency Ultrasound Transducers, Applied sciences, vol.6, issue.12, p.392, 2016.

S. Mallidi, J. Tam, T. Larson, A. Karpiouk, K. Sokolov et al., Selective detection of cancer using spectroscopic photoacoustic imaging and bioconjugated gold nanoparticles, IEEE International Ultrasonics Symposium (IUS), p.578581, 2008.

J. M. Mari, S. West, P. C. Beard, and A. E. Desjardins, Multispectral Photoacoustic Imaging of Nerves with a Clinical Ultrasound System, SPIE BiOS, International Society for Optics and Photonics, vol.8943, pp.89430-89430, 2014.

J. M. Mari, W. Xia, S. J. West, and A. E. Desjardins, Interventional Multispectral Photoacoustic Imaging with a Clinical Ultrasound Probe for Discriminating Nerves and Tendons: An Ex Vivo Pilot Study, Journal of Biomedical Optics, vol.20, issue.11, p.1105031105034, 2015.

E. Mercep, X. L. Dean-ben, and D. Razansky, Combined pulse-echo ultrasound and multispectral optoacoustic tomography with a multi-segment detector array, IEEE transactions on medical imaging, vol.36, issue.10, p.43, 2017.

M. P. Mienkina, C. Friedrich, K. Hensel, N. C. Gerhardt, M. R. Hofmann et al., Evaluation of Ferucarbotran (Resovist) as a Photoacoustic Contrast Agent, Biomedical Engineering, vol.54, issue.2, p.43, 2009.

L. G. Montilla, R. Olafsson, D. R. Bauer, and R. S. Witte, Real-Time Photoacoustic and Ultrasound Imaging: A Simple Solution for Clinical Ultrasound Systems with Linear Arrays, Physics in Medicine and Biology, vol.58, issue.1, p.112, 2013.

M. J. Moore, P. M. Schygulla, E. M. Strohm, and M. C. Kolios, Single Red Blood Cell Oxygenation Saturation Imaging with Multispectral Photoacoustic Microscopy, IEEE International Ultrasonics Symposium (IUS), vol.12, p.13, 2016.

O. M. Morse and K. U. Ingard, Theoretical acoustics, 1987.

S. Mure, T. Grenier, D. S. Meier, C. R. Guttmann, and H. Benoit-cattin, Unsupervised Spatio-Temporal Filtering of Image Sequences. A Mean-Shift Specication, Pattern Recognition Letters, vol.68, issue.1, p.4855, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01206150

M. P. Jose, J. M. Nascimento, and . Dias, Vertex Component Analysis: A Fast Algorithm to Unmix Hyperspectral Data, IEEE Transactions on Geoscience and Remote Sensing, vol.43, p.898910, 2004.

. Aneline, ;. A. Bibliography, A. Needles, J. Heinmiller, C. Sun et al., Development and Initial Application of a Fully Integrated Photoacoustic MicroUltrasound System, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol.60, issue.5, p.88897, 2013.

A. Plaza and C. Chein-i, An Improved N-FINDR Algorithm in Implementation. Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery, vol.XI, p.298307, 2005.

M. Polichetti, F. Varray, J. C. Bera, C. Cachard, and B. Nicolas, A Nonlinear Beamformer Based on p-th Root Compression -Application to Plane Wave Ultrasound Imaging, Applied Sciences, vol.8, issue.4, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01825183

W. K. Pratt, Digital image processing, p.43, 1978.

A. Rosencwaig and A. Gersho, Theory of the Photoacoustic Eect with Solids, Journal of Applied Physics, vol.47, issue.1, p.6469, 1976.

L. L. Scharf, Statistical signal processing: Detection, estimation, and time series analysis, p.69, 1991.

R. L. Shelton and B. E. Applegate, O-Axis Photoacoustic Microscopy, IEEE Transactions on biomedical engineering, vol.57, issue.8, p.18351838, 2010.

R. Su, A. S. Ermilov, A. V. Liopo, and A. A. Oraevsky, Optoacoustic 3D visualization of changes in physiological properties of mouse tissues from live to postmortem, Proc. SPIE, vol.8223, p.1421, 2012.

T. L. Szabo, Generalized fourier transform diraction theory for parabolically anisotropic media, Journal of the Acoustical Society of America, vol.63, issue.1, p.2834, 1978.

L. Tong, A. Ramalli, P. Tortoli, G. Fradella, S. Caciolli et al., WideAngle Tissue Doppler Imaging at High Frame Rate Using Multi-Line Transmit Beamforming: An Experimental Validation In Vivo, IEEE Transactions On Medical Imaging, vol.35, issue.2, p.521528, 2016.

B. E. Treeby, Acoustic attenuation compensation in photoacoustic tomography using timevariant ltering, Journal of Biomedical Optics, vol.18, issue.3, p.03600803600811, 2013.

M. Vallet, Développement d'un système d'imagerie photoacoustique : validation sur fantômes et application à l'athérosclérose, vol.18, 2015.

R. L. Van-veen, H. J. Sterenborg, A. Pieri, A. Torricelli, and R. Cubeddu, Determination of VIS-NIR absorption coecients of mammalian fat, with time-and spatially resolved diuse reectance and transmission spectroscopy, Biomedical Topical Meeting, vol.9, 2004.

, Aneline DOLET 111

. Bibliography, Visualsonics 2018] Fujilm Visualsonics. Oxy-Hemo Mode, vol.87, 2018.

B. Wang, J. Su, J. Amirian, S. H. Litovsky, R. Smalling et al., On the possibility to detect lipid in atherosclerotic plaques using intravascular photoacoustic imaging, Proceedings of IEEE Engineering in Medicine and Biology Society Conference, p.47674770, 2009.

L. V. Wang and J. Yao, A Practical Guide to Photoacoustic Tomography in the Life Sciences, P. Wells. Biomedical acoustics, vol.13, issue.8, p.627638, 1977.

M. E. Winter and . N-findr, An Algorithm for Fast Autonomous Spectral End-Member Determination in Hyperspectral Data, International Society for Optics and Photonics, vol.3753, 1999.

M. Yuan and Y. Lin, Model selection and estimation in regression with grouped variables, Journal of the Royal Statistical Society: Series B (Statistical methodology), vol.68, issue.1, p.69, 2006.

G. Zahnd, Estimation du mouvement bi-dimensionnel de la paroi artérielle en imagerie ultrasonore par une approche conjointe de segmentation et de speckle tracking, Creatis, 2007.

J. Zalev and M. C. Kolios, Detecting abnormal vasculature from photoacoustic signals using wavelet-packet features, Proc. SPIE, vol.7899, p.14, 2011.

H. F. Zhang, K. Maslov, M. Sivaramakrishnan, G. Stoica, and L. V. Wang, Imaging of Hemoglobin Oxygen Saturation Variations in Single Vessels in Vivo Using Photoacoustic Microscopy, Applied Physics Letters, vol.90, issue.5, p.14, 2007.