M. M. Cox and J. R. Battista, Deinococcus radiodurans-the consummate survivor, Nat. Rev. Microbiol, vol.3, pp.882-892, 2005.

M. Blasius, U. Hubscher, and S. Sommer, Deinococcus radiodurans: what belongs to the survival kit?, Crit. Rev. Biochem. Mol. Biol, vol.43, pp.221-238, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00297146

D. Slade and M. Radman, Oxidative stress resistance in Deinococcus radiodurans, Microbiol, Mol. Biol. Rev, vol.75, pp.133-191, 2011.

K. Zahradka, D. Slade, A. Bailone, S. Sommer, D. Averbeck et al., Reassembly of shattered chromosomes in Deinococcus radiodurans, Nature, vol.443, pp.569-573, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00116806

D. Slade, A. B. Lindner, G. Paul, and M. Radman, Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans, Cell, vol.136, pp.1044-1055, 2009.
DOI : 10.1016/j.cell.2009.01.018
URL : https://doi.org/10.1016/j.cell.2009.01.018

M. J. Daly and K. W. Minton, An alternative pathway of recombination of chromosomal fragments precedes recA-dependent recombination in the radioresistant bacterium Deinococcus radiodurans, J. Bacteriol, vol.178, pp.4461-4471, 1996.

J. Repar, S. Cvjetan, D. Slade, M. Radman, D. Zahradka et al., RecA protein assures fidelity of DNA repair and genome stability in Deinococcus radiodurans, DNA Repair (Amst), vol.9, pp.1151-1161, 2010.

C. Bouthier-de-la-tour, S. Boisnard, C. Norais, M. Toueille, E. Bentchikou et al., The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity, DNA Repair (Amst), vol.10, pp.1223-1231, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00764859

I. Narumi, K. Satoh, S. Cui, T. Funayama, S. Kitayama et al., PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation, Mol. Microbiol, vol.54, pp.278-285, 2004.

F. Lecointe, I. V. Shevelev, A. Bailone, S. Sommer, and U. Hubscher, Involvement of an X family DNA polymerase in double-stranded break repair in the radioresistant organism Deinococcus radiodurans, Mol. Microbiol, vol.53, pp.1721-1730, 2004.

M. Tanaka, A. M. Earl, H. A. Howell, M. J. Park, J. A. Eisen et al., Battista, Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance, Genetics, vol.168, pp.21-33, 2004.

D. R. Harris, M. Tanaka, S. V. Saveliev, E. Jolivet, A. M. Earl et al., Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1, PLoS Biol, vol.2, p.304, 2004.

E. Jolivet, F. Lecointe, G. Coste, K. Satoh, I. Narumi et al., Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1, Mol. Microbiol, vol.59, pp.338-349, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00079723

A. Devigne, DNA Repair, vol.12, pp.265-272, 2013.

C. A. Norais, S. Chitteni-pattu, E. A. Wood, R. B. Inman, and M. M. Cox, DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation, J. Biol. Chem, vol.284, pp.21402-21411, 2009.

G. Xu, H. Lu, L. Wang, H. Chen, Z. Xu et al., DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans, DNA Repair (Amst), vol.9, pp.805-812, 2010.

S. Kitayama, S. Asaka, and K. Totsuka, DNA double-strand breakage and removal of cross-links in Deinococcus radiodurans, J. Bacteriol, vol.155, pp.1200-1207, 1983.

Y. Kobayashi, I. Narumi, K. Satoh, T. Funayama, M. Kikuchi et al., Radiation response mechanisms of the extremely radioresistant bacterium Deinococcus radiodurans, vol.18, pp.134-135, 2004.

R. Meima, H. M. Rothfuss, L. Gewin, and M. E. Lidstrom, Promoter cloning in the radioresistant bacterium Deinococcus radiodurans, J. Bacteriol, vol.183, pp.3169-3175, 2001.

S. Mennecier, G. Coste, P. Servant, A. Bailone, and S. Sommer, Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans, Mol. Genet. Genomics, vol.272, pp.460-469, 2004.

C. Bouthier-de-la-tour, M. Toueille, E. Jolivet, H. H. Nguyen, P. Servant et al., The Deinococcus radiodurans SMC protein is dispensable for cell viability yet plays a role in DNA folding, Extremophiles, vol.13, pp.827-837, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00527433

J. R. Battista, Against all odds: the survival strategies of Deinococcus radiodurans, Annu. Rev. Microbiol, vol.51, pp.203-224, 1997.

E. Bentchikou, P. Servant, G. Coste, and S. Sommer, A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans, PLoS Genet, vol.6, p.1000774, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00506306

M. Thanbichler, Synchronization of chromosome dynamics and cell division in bacteria, Cold Spring Harb. Perspect. Biol, vol.2, p.331, 2010.

C. Possoz, I. Junier, and O. Espeli, Bacterial chromosome segregation, Front. Biosci, vol.17, pp.1020-1034, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01635952

E. Toro and L. Shapiro, Bacterial chromosome organization and segregation, Cold Spring Harb. Perspect. Biol, vol.2, p.349, 2010.

C. Allen, A. K. Ashley, R. Hromas, and J. A. Nickoloff, More forks on the road to replication stress recovery, J. Mol. Cell Biol, vol.3, pp.4-12, 2011.

P. Servant, E. Jolivet, E. Bentchikou, S. Mennecier, A. Bailone et al., The ClpPX protease is required for radioresistance and regulates cell division after gamma-irradiation in Deinococcus radiodurans, Mol. Microbiol, vol.66, pp.1231-1239, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00195196

M. Toueille, B. Mirabella, P. Guerin, C. Bouthier-de-la-tour, S. Boisnard et al., A comparative proteomic approach to better define Deinococcus nucleoid specificities, J. Proteomics, vol.75, pp.2588-2600, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00757315

M. M. Cox and J. R. Battista, Deinococcus radiodurans-the consummate survivor, Nat Rev Microbiol, vol.3, pp.882-892, 2005.

D. Slade and M. Radman, Oxidative Stress Resistance in Deinococcus radiodurans, Microbiol Mol Biol Rev, vol.75, pp.133-191, 2011.

A. Krisko and M. Radman, Biology of extreme radiation resistance: the way of Deinococcus radiodurans, Cold Spring Harb Perspect Biol, vol.5, p.12765, 2013.

M. J. Daly and K. W. Minton, Interchromosomal recombination in the extremely radioresistant bacterium Deinococcus radiodurans, J Bacteriol, vol.177, pp.5495-5505, 1995.

D. Slade, A. B. Lindner, G. Paul, and M. Radman, Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans, Cell, vol.136, pp.1044-1055, 2009.

C. Bouthier-de-la-tour, S. Boisnard, C. Norais, M. Toueille, E. Bentchikou et al., The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its singlestrand annealing activity, DNA Repair (Amst), vol.10, pp.1223-1231, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00764859

I. Narumi, K. Satoh, S. Cui, T. Funayama, S. Kitayama et al., PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation, Mol Microbiol, vol.54, pp.278-285, 2004.

S. Kota, V. A. Kamble, Y. S. Rajpurohit, and H. S. Misra, ATP-type DNA ligase requires other proteins for its activity in vitro and its operon components for radiation resistance in Deinococcus radiodurans in vivo, Biochem Cell Biol, vol.88, pp.783-790, 2010.

K. S. Makarova, M. V. Omelchenko, E. K. Gaidamakova, V. Y. Matrosova, A. Vasilenko et al., Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks, PLoS One, vol.2, p.955, 2007.

M. Ludanyi, L. Blanchard, R. Dulermo, G. Brandelet, L. Bellanger et al., Radiation response in Deinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO, Mol Microbiol, vol.94, pp.434-449, 2014.

A. Devigne, S. Ithurbide, C. Bouthier-de-la-tour, F. Passot, M. Mathieu et al., DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in the radioresistant Deinococcus radiodurans bacterium, Mol Microbiol, vol.96, pp.1069-1084, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01464823

Y. Wang, Q. Xu, H. Lu, L. Lin, L. Wang et al., Protease activity of PprI facilitates DNA damage response: Mn2+-dependence and substrate sequence-specificity of the proteolytic reaction, PLoS One, vol.10, p.122071, 2015.

M. Adachi, H. Hirayama, R. Shimizu, K. Satoh, I. Narumi et al., Interaction of double-stranded DNA with polymerized PprA protein from Deinococcus radiodurans, Protein Sci, vol.23, pp.1349-1358, 2014.

E. M. Hartmann, F. Allain, J. C. Gaillard, O. Pible, and J. Armengaud, Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria, Methods Mol Biol, vol.1197, pp.275-285, 2014.

G. Clair, J. Armengaud, and C. Duport, Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus, Mol Cell Proteomics, pp.111-013102, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01329663

Y. S. Yang, B. Fernandez, A. Lagorce, V. Aloin, K. M. De-guillen et al., Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans, Proteomics, vol.15, pp.114-123, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01444886

P. C. Carvalho, J. Hewel, V. C. Barbosa, and J. R. Yates, Identifying differences in protein expression levels by spectral counting and feature selection, Genet Mol Res, vol.7, pp.342-356, 2008.
DOI : 10.4238/vol7-2gmr426
URL : https://doi.org/10.4238/vol7-2gmr426

Y. Y. Huang, J. Y. Deng, J. Gu, Z. P. Zhang, A. Maxwell et al., The key DNA-binding residues in the C-terminal domain of Mycobacterium tuberculosis DNA gyrase A subunit (GyrA), Nucleic Acids Res, vol.34, pp.5650-5659, 2006.

X. S. Pan and L. M. Fisher, Streptococcus pneumoniae DNA gyrase and topoisomerase IV: overexpression, purification, and differential inhibition by fluoroquinolones, Antimicrob Agents Chemother, vol.43, pp.1129-1136, 1999.

K. S. Makarova, L. Aravind, Y. I. Wolf, R. L. Tatusov, K. W. Minton et al., Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics, Microbiol Mol Biol Rev, vol.65, pp.44-79, 2001.

C. L. Smith, recF-dependent induction of recA synthesis by coumermycin, a specific inhibitor of the B subunit of DNA gyrase, Proc Natl Acad Sci U S A, vol.80, pp.2510-2513, 1983.

M. S. Osburne, S. M. Zavodny, and G. A. Peterson, Drug-induced relaxation of supercoiled plasmid DNA in Bacillus subtilis and induction of the SOS response, J Bacteriol, vol.170, pp.442-445, 1988.

M. Tanaka, A. M. Earl, H. A. Howell, M. J. Park, J. A. Eisen et al., Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance, Genetics, vol.168, pp.21-33, 2004.

M. A. Kohanski, D. J. Dwyer, B. Hayete, C. A. Lawrence, and J. J. Collins, A common mechanism of cellular death induced by bactericidal antibiotics, Cell, vol.130, pp.797-810, 2007.
DOI : 10.1016/j.cell.2007.06.049
URL : https://doi.org/10.1016/j.cell.2007.06.049

F. Collin, S. Karkare, and A. Maxwell, Exploiting bacterial DNA gyrase as a drug target: current state and perspectives, Appl Microbiol Biotechnol, vol.92, pp.479-497, 2011.

J. Kato, Y. Nishimura, R. Imamura, H. Niki, S. Hiraga et al., New topoisomerase essential for chromosome segregation in, E. coli. Cell, vol.63, pp.393-404, 1990.

H. Peng and K. J. Marians, Decatenation activity of topoisomerase IV during oriC and pBR322 DNA replication in vitro, Proc Natl Acad Sci U S A, vol.90, pp.8571-8575, 1993.

U. H. Manjunatha, M. Dalal, M. Chatterji, D. R. Radha, S. S. Visweswariah et al., Functional characterisation of mycobacterial DNA gyrase: an efficient decatenase, Nucleic Acids Res, vol.30, pp.2144-2153, 2002.

Y. Li, K. Sergueev, and S. Austin, The segregation of the Escherichia coli origin and terminus of replication, Mol Microbiol, vol.46, pp.985-996, 2002.

F. M. Passot, H. H. Nguyen, C. Dard-dascot, C. Thermes, P. Servant et al., Nucleoid Organization in the Radioresistant Bacterium Deinococcus radiodurans, Mol Microbiol, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01464688

C. Bouthier-de-la-tour, F. M. Passot, M. Toueille, B. Mirabella, P. Guerin et al., Comparative proteomics, 2013.

M. Adachi, H. Hirayama, R. Shimizu, K. Satoh, I. Narumi et al., Interaction of double-stranded DNA with polymerized PprA protein from Deinococcus radiodurans, Protein Sci, vol.23, pp.1349-1358, 2014.

S. S. Adachi and . Hiraga, Mutants suppressing novobiocin hypersensitivity of a mukB null mutation, Journal of bacteriology, vol.185, pp.3690-3695, 2003.

D. W. Adams and . Errington, Bacterial cell division: assembly, maintenance and disassembly of the Z ring, Nature reviews. Microbiology, vol.7, pp.642-653, 2009.

A. Azam, T. , A. Iwata, A. Nishimura, S. Ueda et al., Growth phasedependent variation in protein composition of the Escherichia coli nucleoid, Journal of bacteriology, vol.181, pp.6361-6370, 1999.

A. Allardet-servent, S. Michaux-charachon, E. Jumas-bilak, L. Karayan, and &. Ramuz, Presence of one linear and one circular chromosome in the Agrobacterium tumefaciens C58 genome, Journal of bacteriology, vol.175, pp.7869-7874, 1993.

M. Almiron, A. J. Link, D. Furlong, and &. Kolter, A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli, Genes & development, vol.6, pp.2646-2654, 1992.

A. W. Anderson, H. C. Nordon, R. F. Cain, G. Parrish, and &. Duggan, Studies on a radioresistant micrococcus. I. Isolation, morphology, cultural characteristics, and resistance to gamma radiation, Food Technol, vol.10, pp.575-578, 1956.

D. G. Anderson and . Kowalczykowski, The translocating RecBCD enzyme stimulates recombination by directing RecA protein onto ssDNA in a chi-regulated manner, Cell, vol.90, pp.77-86, 1997.

T. A. Azam and . Ishihama, Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinity, The Journal of biological chemistry, vol.274, pp.33105-33113, 1999.

A. A. Bartosik, K. Lasocki, J. Mierzejewska, C. M. Thomas, and &. Jagura-burdzy, ParB of Pseudomonas aeruginosa: interactions with its partner ParA and its target parS and specific effects on bacterial growth, Journal of bacteriology, vol.186, pp.6983-6998, 2004.

E. Bentchikou, P. Servant, G. Coste, and &. S. Sommer, Additive effects of SbcCD and PolX deficiencies in the in vivo repair of DNA double strand breaks in Deinococcus radiodurans, Journal of bacteriology, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00195312

E. Bentchikou, P. Servant, G. Coste, and &. S. Sommer, A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans, PLoS genetics, vol.6, p.1000774, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00506306

T. G. Bernhardt and . De-boer, SlmA, a nucleoid-associated, FtsZ binding protein required for blocking septal ring assembly over, Chromosomes in E. coli. Molecular cell, vol.18, pp.555-564, 2005.

M. J. Bessman, D. N. Frick-&-s, and . O'handley, The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, housecleaning" enzymes. The Journal of biological chemistry, vol.271, pp.25059-25062, 1996.

G. A. Bhattacharyya and . Grove, The N-terminal extensions of Deinococcus radiodurans Dps-1 mediate DNA major groove interactions as well as assembly of the dodecamer, The Journal of biological chemistry, vol.282, pp.11921-11930, 2007.

H. &. Bi and . Zhang, Integration host factor is required for the induction of acid resistance in Escherichia coli, Current microbiology, vol.69, pp.218-224, 2014.

S. Bigot, O. A. Saleh, C. Lesterlin, C. Pages, M. E. Karoui et al., KOPS: DNA motifs that control E. coli chromosome segregation by orienting the FtsK translocase, The EMBO journal, vol.24, pp.3770-3780, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00013989

S. Bigot, V. Sivanathan, C. Possoz, F. X. Barre, and &. Cornet, FtsK, a literate chromosome segregation machine, Molecular microbiology, vol.64, pp.1434-1441, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00154604

M. Blasius, U. Hubscher, and &. S. Sommer, Deinococcus radiodurans: what belongs to the survival kit?, Crit Rev Biochem Mol Biol, vol.43, pp.221-238, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00297146

C. Bonacossa-de-almeida, G. Coste, S. Sommer, and &. Bailone, Quantification of RecA protein in Deinococcus radiodurans reveals involvement of RecA, but not LexA, in its regulation, Molecular genetics and genomics : MGG, vol.268, pp.28-41, 2002.

L. Bosch, L. Nilsson, E. Vijgenboom, and &. Verbeek, FIS-dependent trans-activation of tRNA and rRNA operons of Escherichia coli, Biochimica et biophysica acta, vol.1050, pp.293-301, 1990.

E. Bouffartigues, M. Buckle, C. Badaut, A. Travers, and &. S. Rimsky, H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing, Nature structural & molecular biology, vol.14, pp.441-448, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00216006

C. Bouthier-de-la-tour, S. Boisnard, C. Norais, M. Toueille, E. Bentchikou et al., The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity, P. Servant, vol.10, pp.1223-1231, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00764859

C. Bouthier-de-la-tour, M. Toueille, E. Jolivet, H. H. Nguyen, P. Servant et al., The Deinococcus radiodurans SMC protein is dispensable for cell viability yet plays a role in DNA folding, Extremophiles : life under extreme conditions, vol.13, pp.827-837, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00527433

H. &. Bremer and . Dennis, Modulation of chemical composition and other parameters of the cell by growth rate, Escherichia coli and Salmonella typhimuirum: cellular and molecular biology. F.N.a. others, pp.1527-1542, 1987.

R. A. Britton, D. C. Lin-&-a, and . Grossman, Characterization of a prokaryotic SMC protein involved in chromosome partitioning, Genes & development, vol.12, pp.1254-1259, 1998.

B. &. Brooks and . Murray, Nomenclature for "Micrococcus radiodurans" and other radiation-resistant cocci: Deinococcaceae fam. nov. and Deinococcus gen. nov., including five species, Int J Syst Bacteriol, vol.31, pp.353-360, 1981.

R. Carballido-lopez, A. Formstone, Y. Li, S. D. Ehrlich, P. Noirot et al., Actin homolog MreBH governs cell morphogenesis by localization of the cell wall hydrolase LytE, Developmental cell, vol.11, pp.399-409, 2006.

V. K. Charaka and H. S. Misra, Functional characterization of the role of the chromosome I partitioning system in genome segregation in Deinococcus radiodurans, Journal of bacteriology, vol.194, pp.5739-5748, 2012.

F. S. Confalonieri and . Sommer, Bacterial and archael resistance to ionizing radiation, J Phys, 2011.

J. C. Connelly, E. S. De-leau, and &. D. Leach, DNA cleavage and degradation by the SbcCD protein complex from Escherichia coli, Nucleic acids research, vol.27, pp.1039-1046, 1999.

J. C. Connelly, L. A. Kirkham-&-d, and . Leach, The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA, Proceedings of the National Academy of Sciences of the United States of America, vol.95, pp.7969-7974, 1998.

J. C. Connelly and . Leach, Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex, Trends in biochemical sciences, vol.27, pp.410-418, 2002.

N. J. Crisona, T. R. Strick, D. Bensimon, V. &. Croquette, and . Cozzarelli, Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in singlemolecule and ensemble measurements, Genes & development, vol.14, pp.2881-2892, 2000.

G. A. Cromie and . Leach, Recombinational repair of chromosomal DNA doublestrand breaks generated by a restriction endonuclease, Molecular microbiology, vol.41, pp.873-883, 2001.

M. J. Daly, E. K. Gaidamakova, V. Y. Matrosova, J. G. Kiang, R. Fukumoto et al., Small-molecule antioxidant proteome-shields in Deinococcus radiodurans, PloS one, vol.5, p.12570, 2010.

M. J. Daly, E. K. Gaidamakova, V. Y. Matrosova, A. Vasilenko, M. Zhai et al., Protein oxidation implicated as the primary determinant of bacterial radioresistance, PLoS biology, vol.5, p.92, 2007.

M. J. Daly and . Minton, An alternative pathway of recombination of chromosomal fragments precedes recA-dependent recombination in the radioresistant bacterium Deinococcus radiodurans, Journal of bacteriology, vol.178, pp.4461-4471, 1996.

R. T. Dame, C. Wyman, and &. Goosen, H-NS mediated compaction of DNA visualised by atomic force microscopy, Nucleic acids research, vol.28, pp.3504-3510, 2000.

A. De-groot, V. Chapon, P. Servant, R. Christen, M. F. Saux et al., Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert, International journal of systematic and evolutionary microbiology, vol.55, pp.2441-2446, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00079616

M. Della, P. L. Palmbos, H. M. Tseng, L. M. Tonkin, J. M. Daley et al., Mycobacterial Ku and ligase proteins constitute a two-component NHEJ repair machine, Science, vol.306, pp.683-685, 2004.

A. Devigne, C. Bouthier-de-la-tour, P. Guérin, J. Lisboa, and S. Quevillon-cheruel, PprA protein is involved in chomosome segragation via its physical and functional interaction with DNA gyrase in irradiated Deinococcus radiodurans bacteria, J. Armengaud, S. Sommer & P. Servant, 2015.

A. Devigne, S. Ithurbide, C. Bouthier-de-la-tour, F. Passot, M. Mathieu et al., DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in the radioresistant Deinococcus radiodurans bacterium, Molecular microbiology, vol.96, pp.1069-1084, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01464823

A. Devigne, S. Mersaoui, C. Bouthier-de-la-tour, S. Sommer, and &. Servant, The PprA protein is required for accurate cell division of gamma-irradiated Deinococcus radiodurans bacteria, DNA repair, vol.12, pp.265-272, 2013.

D. Ventura, B. , B. Knecht, H. Andreas, W. J. Godinez et al., Chromosome segregation by the Escherichia coli Min system, Molecular systems biology, vol.9, p.686, 2013.

R. J. Digate and . Marians, Escherichia coli topoisomerase III-catalyzed cleavage of RNA, The Journal of biological chemistry, vol.267, pp.20532-20535, 1992.

M. S. Dillingham and . Kowalczykowski, RecBCD enzyme and the repair of doublestranded DNA breaks, Microbiology and molecular biology reviews : MMBR, vol.72, pp.642-671, 2008.

M. S. Dillingham, M. &. Spies, and . Kowalczykowski, RecBCD enzyme is a bipolar DNA helicase, Nature, vol.423, pp.893-897, 2003.

K. &. Drlica and . Zhao, DNA gyrase, topoisomerase IV, and the 4-quinolones, Microbiology and molecular biology reviews : MMBR, vol.61, pp.377-392, 1997.

J. &. Dworkin and . Losick, Does RNA polymerase help drive chromosome segregation in bacteria, Proceedings of the National Academy of Sciences of the United States of America, vol.99, pp.14089-14094, 2002.

A. M. Earl, M. M. Mohundro, I. S. Mian, and . Battista, The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression, Journal of bacteriology, vol.184, pp.6216-6224, 2002.

A. M. Earl, S. K. Rankin, K. P. Kim, O. N. Lamendola, and . Battista, Genetic evidence that the uvsE gene product of Deinococcus radiodurans R1 is a UV damage endonuclease, Journal of bacteriology, vol.184, pp.1003-1009, 2002.

O. Espeli, R. Borne, P. Dupaigne, A. Thiel, E. Gigant et al., A MatP-divisome interaction coordinates chromosome segregation with cell division in E. coli, The EMBO journal, vol.31, pp.3198-3211, 2012.

O. Espeli, C. &. Lee, and . Marians, A physical and functional interaction between Escherichia coli FtsK and topoisomerase IV, The Journal of biological chemistry, vol.278, pp.44639-44644, 2003.

O. Espeli, C. Levine, H. &. Hassing, and . Marians, Temporal regulation of topoisomerase IV activity in E. coli, Molecular cell, vol.11, pp.189-201, 2003.

O. Espeli, R. Mercier, and &. Boccard, DNA dynamics vary according to macrodomain topography in the E. coli chromosome, Molecular microbiology, vol.68, pp.1418-1427, 2008.

R. A. Fekete and . Chattoraj, A cis-acting sequence involved in chromosome segregation in Escherichia coli, Molecular microbiology, vol.55, pp.175-183, 2005.

A. C. Ferreira, M. F. Nobre, F. A. Rainey, M. T. Silva, R. Wait et al., Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs, Int J Syst Bacteriol, vol.47, pp.939-947, 1997.

R. M. Figge, J. &. Easter, and . Gober, Productive interaction between the chromosome partitioning proteins, ParA and ParB, is required for the progression of the cell cycle in Caulobacter crescentus, Molecular microbiology, vol.47, pp.1225-1237, 2003.

D. Frenkiel-krispin, S. Levin-zaidman, E. Shimoni, S. G. Wolf, E. J. Wachtel et al., Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection, The EMBO journal, vol.20, pp.1184-1191, 2001.

T. Funayama, M. Narumi, S. Kikuchi, H. Kitayama, &. Watanabe et al., Identification and disruption analysis of the recN gene in the extremely radioresistant bacterium Deinococcus radiodurans, Mutation research, vol.435, pp.151-161, 1999.

M. Gellert, M. H. O'dea, T. Itoh, and &. Tomizawa, Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase, Proceedings of the National Academy of Sciences of the United States of America, vol.73, pp.4474-4478, 1976.

E. Gerard, E. Jolivet, D. Prieur, and &. Forterre, DNA protection mechanisms are not involved in the radioresistance of the hyperthermophilic archaea Pyrococcus abyssi and P. furiosus. Molecular genetics and genomics, MGG, vol.266, pp.72-78, 2001.

E. Gerber, R. Bernard, S. Castang, N. Chabot, F. Coze et al., Deinococcus as new chassis for industrial biotechnology: biology, physiology and tools, vol.119, pp.1-10, 2015.

E. Gigant, The parAB gene products of Pseudomonas putida exhibit partition activity in both P. putida and Escherichia coli, Molecular microbiology, vol.43, pp.39-49, 2002.

C. Gong, P. Bongiorno, A. Martins, N. C. Stephanou, H. Zhu et al., Mechanism of nonhomologous end-joining in mycobacteria: a low-fidelity repair system driven by Ku, ligase D and ligase C, Nature structural & molecular biology, vol.12, pp.304-312, 2005.

S. Gottesman, Proteolysis in bacterial regulatory circuits, Annual review of cell and developmental biology, vol.19, pp.565-587, 2003.

P. L. Graumann and . Knust, Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, vol.17, pp.265-275, 2009.

P. L. Graumann, R. &. Losick, and . Strunnikov, Subcellular localization of Bacillus subtilis SMC, a protein involved in chromosome condensation and segregation, Journal of bacteriology, vol.180, pp.5749-5755, 1998.

E. R. Griffiths and . Gupta, Identification of signature proteins that are distinctive of the Deinococcus-Thermus phylum, International microbiology : the official journal of the Spanish Society for Microbiology, vol.10, pp.201-208, 2007.

S. &. Gruber and . Errington, Recruitment of condensin to replication origin regions by ParB/SpoOJ promotes chromosome segregation in B. subtilis, Cell, vol.137, pp.685-696, 2009.

T. A. Haikarainen and . Papageorgiou, Dps-like proteins: structural and functional insights into a versatile protein family. Cellular and molecular life sciences, CMLS, vol.67, pp.341-351, 2010.

M. T. Hansen, Multiplicity of genome equivalents in the radiation-resistant bacterium Micrococcus radiodurans, Journal of bacteriology, vol.134, pp.71-75, 1978.

D. R. Harris, M. Tanaka, S. V. Saveliev, E. Jolivet, A. M. Earl et al., Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1, PLoS biology, vol.2, p.304, 2004.

S. Harsojo, &. Kitayama, and . Matsuyama, Genome multiplicity and radiation resistance in Micrococcus radiodurans, Journal of biochemistry, vol.90, pp.877-880, 1981.

R. K. Hayama and . Marians, Physical and functional interaction between the condensin MukB and the decatenase topoisomerase IV in Escherichia coli, Proceedings of the National Academy of Sciences of the United States of America, vol.107, pp.18826-18831, 2010.

J. F. Heidelberg, J. A. Eisen, W. C. Nelson, R. A. Clayton, M. L. Gwinn et al., DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae, Nature, vol.406, pp.477-483, 2000.

R. &. Hengge and . Bukau, Proteolysis in prokaryotes: protein quality control and regulatory principles, Molecular microbiology, vol.49, pp.1451-1462, 2003.

H. K. Hiasa and . Marians, Two distinct modes of strand unlinking during theta-type DNA replication, The Journal of biological chemistry, vol.271, pp.21529-21535, 1996.

S. Hiraga, C. Ichinose, H. Niki, and &. Yamazoe, Cell cycle-dependent duplication and bidirectional migration of SeqA-associated DNA-protein complexes in, E. coli. Molecular cell, vol.1, pp.381-387, 1998.

M. Hirano, D. E. Anderson, H. P. Erickson, and &. Hirano, Bimodal activation of SMC ATPase by intra-and inter-molecular interactions, The EMBO journal, vol.20, pp.3238-3250, 2001.

M. &. Hirano and . Hirano, Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA, The EMBO journal, vol.21, pp.5733-5744, 2002.

T. Hirano, SMC-mediated chromosome mechanics: a conserved scheme from bacteria to vertebrates?, Genes & development, vol.13, pp.11-19, 1999.

T. Hirano, The ABCs of SMC proteins: two-armed ATPases for chromosome condensation, cohesion, and repair, Genes & development, vol.16, pp.399-414, 2002.

P. Hirsch, C. A. Gallikowski, J. Siebert, K. Peissl, R. Kroppenstedt et al., Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draughttolerating, UV-resistant bacteria from continental Antarctica, Systematic and applied microbiology, vol.27, pp.636-645, 2004.

A. Hojgaard, H. Szerlong, C. Tabor, and &. Kuempel, Norfloxacin-induced DNA cleavage occurs at the dif resolvase locus in Escherichia coli and is the result of interaction with topoisomerase IV, Molecular microbiology, vol.33, pp.1027-1036, 1999.

T. J. Hsieh, L. Farh, W. M. Huang-&-n, and . Chan, Structure of the topoisomerase IV Cterminal domain: a broken beta-propeller implies a role as geometry facilitator in catalysis, The Journal of biological chemistry, vol.279, pp.55587-55593, 2004.

T. S. Hsieh and . Wang, Thermodynamic properties of superhelical DNAs, Biochemistry, vol.14, pp.527-535, 1975.

Y. Hua, G. Narumi, B. Gao, K. Tian, S. Satoh et al., PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans, Biochemical and biophysical research communications, vol.306, pp.354-360, 2003.

K. Ireton, N. W. Gunther-&-a, and . Grossman, spo0J is required for normal chromosome segregation as well as the initiation of sporulation in Bacillus subtilis, Journal of bacteriology, vol.176, pp.5320-5329, 1994.

D. Jakimowicz, A. Brzostek, A. Rumijowska-galewicz, P. Zydek, A. Dolzblasz et al., Characterization of the mycobacterial chromosome segregation protein ParB and identification of its target in Mycobacterium smegmatis, Microbiology, vol.153, pp.4050-4060, 2007.

R. B. Jensen and . Shapiro, The Caulobacter crescentus smc gene is required for cell cycle progression and chromosome segregation, Proceedings of the National Academy of Sciences of the United States of America, vol.96, pp.10661-10666, 1999.

R. B. Jensen and . Shapiro, Cell-cycle-regulated expression and subcellular localization of the Caulobacter crescentus SMC chromosome structural protein, Journal of bacteriology, vol.185, pp.3068-3075, 2003.

R. Jessberger, The many functions of SMC proteins in chromosome dynamics, Nature reviews. Molecular cell biology, vol.3, pp.767-778, 2002.

E. Jolivet, F. Lecointe, G. Coste, K. Satoh, I. Narumi et al., Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1, Molecular microbiology, vol.59, pp.338-349, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00079723

L. J. Jones, R. Carballido-lopez, and &. J. Errington, Control of cell shape in bacteria: helical, actin-like filaments in Bacillus subtilis, Cell, vol.104, pp.913-922, 2001.

B. Joshi, R. Schmid, K. &. Altendorf, and . Apte, Protein recycling is a major component of post-irradiation recovery in Deinococcus radiodurans strain R1, Biochemical and biophysical research communications, vol.320, pp.1112-1117, 2004.

S. Kang, J. S. Han, J. H. Park, K. &. Skarstad, and . Hwang, SeqA protein stimulates the relaxing and decatenating activities of topoisomerase IV, The Journal of biological chemistry, vol.278, pp.48779-48785, 2003.

N. Kantake, M. V. Madiraju, T. &. Sugiyama, and . Kowalczykowski, Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: A 153 common step in genetic recombination, Proceedings of the National Academy of Sciences of the United States of America, vol.99, pp.15327-15332, 2002.

A. Kelly, M. D. Goldberg, R. K. Carroll, V. Danino, J. C. Hinton-&-c et al., A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium, Microbiology, vol.150, pp.2037-2053, 2004.

K. Keyamura, C. Sakaguchi, Y. Kubota, H. Niki, and &. Hishida, RecA protein recruits structural maintenance of chromosomes (SMC)-like RecN protein to DNA doublestrand breaks, The Journal of biological chemistry, vol.288, pp.29229-29237, 2013.

D. Kidane, H. Sanchez, J. C. Alonso-&-p, and . Graumann, Visualization of DNA doublestrand break repair in live bacteria reveals dynamic recruitment of Bacillus subtilis RecF, RecO and RecN proteins to distinct sites on the nucleoids, Molecular microbiology, vol.52, pp.1627-1639, 2004.

S. Kota, V. K. Charaka, and H. S. Misra, PprA, a pleiotropic protein for radioresistance, works through DNA gyrase and shows cellular dynamics during postirradiation recovery in Deinococcus radiodurans, J Genet, vol.93, pp.349-354, 2014.

S. Kota, V. K. Charaka, S. Ringgaard, M. K. Waldor, and H. S. Misra, PprA contributes to Deinococcus radiodurans resistance to nalidixic acid, genome maintenance after DNA damage and interacts with deinococcal topoisomerases, PloS one, vol.9, p.85288, 2014.

S. H. Kota and . Misra, PprA: A protein implicated in radioresistance of Deinococcus radiodurans stimulates catalase activity in Escherichia coli, Applied microbiology and biotechnology, vol.72, pp.790-796, 2006.

S. H. Kota and . Misra, Identification of a DNA processing complex from Deinococcus radiodurans, Biochemistry and cell biology = Biochimie et biologie cellulaire, vol.86, pp.448-458, 2008.

S. C. Kowalczykowski, Initiation of genetic recombination and recombinationdependent replication, Trends in biochemical sciences, vol.25, pp.156-165, 2000.

A. &. Krisko and . Radman, Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans, Proceedings of the National Academy of Sciences of the United States of America, vol.107, pp.14373-14377, 2010.

B. O. Krogh and . Shuman, A poxvirus-like type IB topoisomerase family in bacteria, Proceedings of the National Academy of Sciences of the United States of America, vol.99, pp.1853-1858, 2002.

S. Le, J. K. Moore, J. E. Haber-&-c, and . Greider, RAD50 and RAD51 define two pathways that collaborate to maintain telomeres in the absence of telomerase, Genetics, vol.152, pp.143-152, 1999.

F. Lecointe, G. Coste, S. Sommer, and &. Bailone, Vectors for regulated gene expression in the radioresistant bacterium Deinococcus radiodurans, Gene, vol.336, pp.25-35, 2004.

F. Lecointe, I. V. Shevelev, A. Bailone, S. Sommer, and &. Hubscher, Involvement of an X family DNA polymerase in double-stranded break repair in the radioresistant organism Deinococcus radiodurans, Molecular microbiology, vol.53, pp.1721-1730, 2004.

P. S. Lee and . Grossman, The chromosome partitioning proteins Soj (ParA) and Spo0J (ParB) contribute to accurate chromosome partitioning, separation of replicated sister origins, and regulation of replication initiation in Bacillus subtilis, Molecular microbiology, vol.60, pp.853-869, 2006.

K. P. Lemon and . Grossman, The extrusion-capture model for chromosome partitioning in bacteria, Genes & development, vol.15, pp.2031-2041, 2001.

C. Lesterlin, F. X. Barre, and &. Cornet, Genetic recombination and the cell cycle: what we have learned from chromosome dimers, Molecular microbiology, vol.54, pp.1151-1160, 2004.

S. Levin-zaidman, J. Englander, E. Shimoni, A. K. Sharma, K. W. Minton et al., Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance, Science, vol.299, pp.254-256, 2003.

Y. Li, N. K. Stewart, A. J. Berger, S. Vos, A. J. Schoeffler et al., Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction, Proceedings of the National Academy of Sciences of the United States of America, vol.107, pp.18832-18837, 2010.

J. C. Lindow, M. Kuwano, S. &. Moriya, and . Grossman, Subcellular localization of the Bacillus subtilis structural maintenance of chromosomes (SMC) protein, Molecular microbiology, vol.46, pp.997-1009, 2002.

M. &. Lisby and . Rothstein, DNA repair: keeping it together, Current biology : CB, vol.14, pp.994-996, 2004.

L. F. Liu and . Wang, Supercoiling of the DNA template during transcription, Proceedings of the National Academy of Sciences of the United States of America, vol.84, pp.7024-7027, 1987.

H. Lu, H. Chen, G. Xu, A. M. Shah, and &. Hua, DNA binding is essential for PprI function in response to radiation damage in Deinococcus radiodurans, DNA repair, vol.11, pp.139-145, 2012.

J. Lutkenhaus, Assembly dynamics of the bacterial MinCDE system and spatial regulation of the Z ring, Annual review of biochemistry, vol.76, pp.539-562, 2007.

R. K. Madabhushi and . Marians, Actin homolog MreB affects chromosome segregation by regulating topoisomerase IV in Escherichia coli, Molecular cell, vol.33, pp.171-180, 2009.

R. J. Mailloux, R. Beriault, J. Lemire, R. Singh, D. R. Chenier et al., The tricarboxylic acid cycle, an ancient metabolic network with a novel twist, PloS one, vol.2, p.690, 2007.

R. J. Mailloux, R. Singh, G. Brewer, C. Auger, J. &. Lemire et al., Alphaketoglutarate dehydrogenase and glutamate dehydrogenase work in tandem to modulate the antioxidant alpha-ketoglutarate during oxidative stress in Pseudomonas fluorescens, Journal of bacteriology, vol.191, pp.3804-3810, 2009.

K. S. Makarova, M. V. Omelchenko, E. K. Gaidamakova, V. Y. Matrosova, A. Vasilenko et al., Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks, PloS one, vol.2, p.955, 2007.

N. Makharashvili, O. Koroleva, S. Bera, D. P. Grandgenett, and &. S. Korolev, A novel structure of DNA repair protein RecO from Deinococcus radiodurans, Structure, vol.12, pp.1881-1889, 2004.

R. Maldonado, J. Jimenez, and &. Casadesus, Changes of ploidy during the Azotobacter vinelandii growth cycle, Journal of bacteriology, vol.176, pp.3911-3919, 1994.

E. Maloney, M. Madiraju, and &. Rajagopalan, Overproduction and localization of Mycobacterium tuberculosis ParA and ParB proteins, Tuberculosis, vol.89, pp.65-69, 2009.

A. &. Martinez and . Kolter, Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps, Journal of bacteriology, vol.179, pp.5188-5194, 1997.

J. Mascarenhas, H. Sanchez, S. Tadesse, D. Kidane, M. Krisnamurthy et al., Bacillus subtilis SbcC protein plays an important role in DNA inter-strand cross-link repair, BMC molecular biology, vol.7, p.20, 2006.

J. Mascarenhas, J. Soppa, A. V. Strunnikov-&-p, and . Graumann, Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein, The EMBO journal, vol.21, pp.3108-3118, 2002.

V. J. Mattimore and . Battista, Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation, Journal of bacteriology, vol.178, pp.633-637, 1996.

S. M. Mcleod and . Johnson, Control of transcription by nucleoid proteins, Current opinion in microbiology, vol.4, pp.152-159, 2001.

J. C. Meile, R. Mercier, M. Stouf, C. Pages, and J. Y. , The terminal region of the E. coli chromosome localises at the periphery of the nucleoid, Bouet & F. Cornet, vol.11, p.28, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00610866

T. E. Melby, C. N. Ciampaglio, G. &. Briscoe, and . Erickson, The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge, The Journal of cell biology, vol.142, pp.1595-1604, 1998.

S. Mennecier, G. Coste, P. Servant, A. Bailone, and &. S. Sommer, Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans, Molecular genetics and genomics : MGG, vol.272, pp.460-469, 2004.

C. Michaelis, R. Ciosk, and &. Nasmyth, Cohesins: chromosomal proteins that prevent premature separation of sister chromatids, Cell, vol.91, pp.35-45, 1997.

K. W. Minton, DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans, Molecular microbiology, vol.13, pp.9-15, 1994.

K. W. Minton and . Daly, A model for repair of radiation-induced DNA doublestrand breaks in the extreme radiophile Deinococcus radiodurans, BioEssays : news and reviews in molecular, cellular and developmental biology, vol.17, pp.457-464, 1995.

D. A. Mohl, J. J. Easter, and . Gober, The chromosome partitioning protein, ParB, is required for cytokinesis in Caulobacter crescentus, Molecular microbiology, vol.42, pp.741-755, 2001.

D. A. Mohl and . Gober, Cell cycle-dependent polar localization of chromosome partitioning proteins in Caulobacter crescentus, Cell, vol.88, pp.675-684, 1997.

J. K. Moore and . Haber, Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae, Molecular and cellular biology, vol.16, pp.2164-2173, 1996.

I. Morigen, &. Odsbu, and . Skarstad, Growth rate dependent numbers of SeqA structures organize the multiple replication forks in rapidly growing Escherichia coli, Genes to cells : devoted to molecular & cellular mechanisms, vol.14, pp.643-657, 2009.

K. S. Morimatsu and . Kowalczykowski, RecFOR proteins load RecA protein onto gapped DNA to accelerate DNA strand exchange: a universal step of recombinational repair, Molecular cell, vol.11, pp.1337-1347, 2003.

H. &. Murray and . Errington, Dynamic control of the DNA replication initiation protein DnaA by Soj/ParA, Cell, vol.135, pp.74-84, 2008.

I. Narumi, K. Satoh, S. Cui, T. Funayama, S. Kitayama et al., PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation, Molecular microbiology, vol.54, pp.278-285, 2004.

I. Narumi, K. Satoh, M. Kikuchi, T. Funayama, T. Yanagisawa et al., The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation, Journal of bacteriology, vol.183, pp.6951-6956, 2001.

K. C. Nasmyth and . Haering, The structure and function of SMC and kleisin complexes, Annual review of biochemistry, vol.74, pp.595-648, 2005.

H. H. Nguyen, C. B. De-la-tour, M. Toueille, F. Vannier, S. Sommer et al., The essential histone-like protein HU plays a major role in Deinococcus radiodurans nucleoid compaction, Molecular microbiology, vol.73, pp.240-252, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00529821

E. Nicolas, A. L. Upton, S. Uphoff, O. Henry, A. Badrinarayanan et al., The SMC complex MukBEF recruits topoisomerase IV to the origin of replication region in live, Escherichia coli. mBio, vol.5, pp.1001-01013, 2014.

H. J. Nielsen, Y. Li, B. Youngren, F. G. Hansen, and &. S. Austin, Progressive segregation of the Escherichia coli chromosome, Molecular microbiology, vol.61, pp.383-393, 2006.

S. &. Nolivos and . Sherratt, The bacterial chromosome: architecture and action of bacterial SMC and SMC-like complexes, FEMS microbiology reviews, vol.38, pp.380-392, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01893655

C. A. Norais, S. Chitteni-pattu, E. A. Wood, R. B. Inman-&-m, and . Cox, DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation, The Journal of biological chemistry, vol.284, pp.21402-21411, 2009.

K. Okada, T. Iida, K. Kita-tsukamoto, and &. T. Honda, Vibrios commonly possess two chromosomes, Journal of bacteriology, vol.187, pp.752-757, 2005.

T. Onogi, M. Yamazoe, C. Ichinose, H. Niki, and &. S. Hiraga, Null mutation of the dam or seqA gene suppresses temperature-sensitive lethality but not hypersensitivity to novobiocin of muk null mutants, Journal of bacteriology, vol.182, pp.5898-5901, 2000.

F. J. Paques and . Haber, Multiple pathways of recombination induced by doublestrand breaks in Saccharomyces cerevisiae, Microbiology and molecular biology reviews : MMBR, vol.63, pp.349-404, 1999.

F. M. Passot, H. H. Nguyen, C. Dard-dascot, C. Thermes, P. Servant et al., Nucleoid organization in the radioresistant bacterium Deinococcus radiodurans, vol.97, pp.759-774, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01464688

S. Pellegrino, D. De-sanctis, S. Mcsweeney, and &. Timmins, Expression, purification and preliminary structural analysis of the coiled-coil domain of Deinococcus radiodurans RecN, Acta crystallographica. Section F, Structural biology and crystallization communications, vol.68, pp.218-221, 2012.

S. Pellegrino, J. Radzimanowski, D. De-sanctis, E. Boeri-erba, S. Mcsweeney et al., Structural and functional characterization of an SMC-like protein RecN: new insights into double-strand break repair, Structure, vol.20, pp.2076-2089, 2012.

S. Pellegrino, J. Radzimanowski, S. Mcsweeney, and &. Timmins, Expression, purification and preliminary structural analysis of the head domain of Deinococcus radiodurans RecN, Acta crystallographica. Section F, Structural biology and crystallization communications, vol.68, pp.81-84, 2012.

H. K. Peng and . Marians, Decatenation activity of topoisomerase IV during oriC and pBR322 DNA replication in vitro, Proceedings of the National Academy of Sciences of the United States of America, vol.90, pp.8571-8575, 1993.

B. A. Perez-cheeks, C. Lee, R. &. Hayama, and . Marians, A role for topoisomerase III in Escherichia coli chromosome segregation, Molecular microbiology, vol.86, pp.1007-1022, 2012.

M. G. Pinho, M. &. Kjos, and . Veening, How to get (a)round: mechanisms controlling growth and division of coccoid bacteria, Nature reviews. Microbiology, vol.11, pp.601-614, 2013.

C. Possoz, I. Junier, and &. Espeli, Bacterial chromosome segregation, Front Biosci, vol.17, pp.1020-1034, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01635952

F. A. Rainey, K. Ray, M. Ferreira, B. Z. Gatz, M. F. Nobre et al., Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample, Applied and environmental microbiology, vol.71, pp.5225-5235, 2005.

D. M. Raskin and . De-boer, Rapid pole-to-pole oscillation of a protein required for directing division to the middle of Escherichia coli, Proceedings of the National Academy of Sciences of the United States of America, vol.96, pp.4971-4976, 1999.

T. Rasmussen, R. B. Jensen, and &. Skovgaard, The two chromosomes of Vibrio cholerae are initiated at different time points in the cell cycle, The EMBO journal, vol.26, pp.3124-3131, 2007.

E. D. Reyes, P. L. Patidar, L. A. Uranga, A. S. Bortoletto, and &. S. Lusetti, RecN is a cohesin-like protein that stimulates intermolecular DNA interactions in vitro, The Journal of biological chemistry, vol.285, pp.16521-16529, 2010.

P. A. Rice, S. Yang, K. &. Mizuuchi, and . Nash, Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn, Cell, vol.87, pp.1295-1306, 1996.

E. P. Rocha, Order and disorder in bacterial genomes, Current opinion in microbiology, vol.7, pp.519-527, 2004.

P. D. Rodley, U. Romling, and &. Tummler, A physical genome map of the Burkholderia cepacia type strain, Molecular microbiology, vol.17, pp.57-67, 1995.

H. Rothfuss, J. C. Lara, A. K. Schmid-&-m, and . Lidstrom, Involvement of the S-layer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1, Microbiology, vol.152, pp.2779-2787, 2006.

J. Rouviere-yaniv, M. &. Yaniv, and . Germond, E. coli DNA binding protein HU forms nucleosomelike structure with circular double-stranded DNA, Cell, vol.17, pp.265-274, 1979.

H. J. Sanchez and . Alonso, Bacillus subtilis RecN binds and protects 3'-singlestranded DNA extensions in the presence of ATP, Nucleic acids research, vol.33, pp.2343-2350, 2005.

H. Sanchez, D. Kidane, M. Castillo-cozar, P. L. Graumann, and . Alonso, Recruitment of Bacillus subtilis RecN to DNA double-strand breaks in the absence of DNA end processing, Journal of bacteriology, vol.188, pp.353-360, 2006.

K. Satoh, H. Ohba, H. Sghaier, and &. Narumi, Down-regulation of radioresistance by LexA2 in Deinococcus radiodurans, Microbiology, vol.152, pp.3217-3226, 2006.

J. A. Sawitzke and . Austin, Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I, Proceedings of the National Academy of Sciences of the United States of America, vol.97, pp.1671-1676, 2000.

R. Schneider, A. Travers, T. Kutateladze, and &. Muskhelishvili, A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli, Molecular microbiology, vol.34, pp.953-964, 1999.

G. H. Seong, E. Kobatake, K. Miura, A. Nakazawa, and &. Aizawa, Direct atomic force microscopy visualization of integration host factor-induced DNA bending structure of the promoter regulatory region on the Pseudomonas TOL plasmid, Biochemical and biophysical research communications, vol.291, pp.361-366, 2002.

P. Servant, E. Jolivet, E. Bentchikou, S. Mennecier, A. Bailone et al., The ClpPX protease is required for radioresistance and regulates cell division after gammairradiation in Deinococcus radiodurans, Molecular microbiology, vol.66, pp.1231-1239, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00195196

R. Shashidhar, S. A. Kumar, H. S. Misra, and J. R. Bandekar, Evaluation of the role of enzymatic and nonenzymatic antioxidant systems in the radiation resistance of Deinococcus, Canadian journal of microbiology, vol.56, pp.195-201, 2010.

M. Sioud, G. Baldacci, A. M. De-recondo, and &. P. Forterre, Inhibitors of DNA topoisomerase II induce topological changes in an archaebacterial plasmid in vivo, Biochemical pharmacology, vol.37, pp.1879-1880, 1988.

D. Slade, A. B. Lindner, G. Paul, and &. Radman, Recombination and replication in DNA repair of heavily irradiated Deinococcus radiodurans, Cell, vol.136, pp.1044-1055, 2009.

D. &. Slade and . Radman, Oxidative Stress Resistance in Deinococcus radiodurans, Microbiology and molecular biology reviews : MMBR, vol.75, pp.133-191, 2011.

M. Spies, P. R. Bianco, M. S. Dillingham, N. Handa, R. J. Baskin-&-s et al., A molecular throttle: the recombination hotspot chi controls DNA translocation by the RecBCD helicase, Cell, vol.114, pp.647-654, 2003.

M. Stouf, J. C. Meile, and &. Cornet, FtsK actively segregates sister chromosomes in Escherichia coli, Proceedings of the National Academy of Sciences of the United States of America, vol.110, pp.11157-11162, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00947672

A. V. Strunnikov, SMC complexes in bacterial chromosome condensation and segregation, Plasmid, vol.55, pp.135-144, 2006.

N. L. Sullivan, K. A. Marquis-&-d, and . Rudner, Recruitment of SMC by ParB-parS organizes the origin region and promotes efficient chromosome segregation, Cell, vol.137, pp.697-707, 2009.

K. Suresh, G. S. Reddy, S. Sengupta, and &. S. Shivaji, Deinococcus indicus sp. nov., an arsenic-resistant bacterium from an aquifer in West Bengal, India. International journal of systematic and evolutionary microbiology, vol.54, pp.457-461, 2004.

A. S. Suwanto and . Kaplan, Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: presence of two unique circular chromosomes, Journal of bacteriology, vol.171, pp.5850-5859, 1989.

M. &. Thanbichler and . Shapiro, MipZ, a spatial regulator coordinating chromosome segregation with cell division in Caulobacter, Cell, vol.126, pp.147-162, 2006.

B. Tian, Z. Sun, S. Shen, H. Wang, J. Jiao et al., Effects of carotenoids from Deinococcus radiodurans on protein oxidation, Letters in applied microbiology, vol.49, pp.689-694, 2009.

J. Timmins, I. Leiros, and &. S. Mcsweeney, Crystal structure and mutational study of RecOR provide insight into its mode of DNA binding, The EMBO journal, vol.26, pp.3260-3271, 2007.

E. &. Toro and . Shapiro, Bacterial chromosome organization and segregation, Cold Spring Harb Perspect Biol, vol.2, p.349, 2010.

M. Toueille, B. Mirabella, P. Guerin, C. Bouthier-de-la-tour, S. Boisnard et al., A comparative proteomic approach to better define Deinococcus nucleoid specificities, Journal of proteomics, vol.75, pp.2588-2600, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00757315

A. &. Travers and . Muskhelishvili, Bacterial chromatin. Current opinion in genetics & development, vol.15, pp.507-514, 2005.

L. &. Tretter and . Adam-vizi, Alpha-ketoglutarate dehydrogenase: a target and generator of oxidative stress, Philosophical transactions of the Royal Society of London. Series B, Biological sciences, vol.360, pp.2335-2345, 2005.

M. Trucksis, J. Michalski, Y. K. Deng, and J. B. Kaper, The Vibrio cholerae genome contains two unique circular chromosomes, Proceedings of the National Academy of Sciences of the United States of America, vol.95, pp.14464-14469, 1998.

C. N. Ullsperger and . Cozzarelli, Contrasting enzymatic activities of topoisomerase IV and DNA gyrase from Escherichia coli, The Journal of biological chemistry, vol.271, pp.7731-7740, 1996.

A. J. Varshavsky, S. A. Nedospasov, V. V. Bakayev, T. G. Bakayeva-&-g, and . Georgiev, Histone-like proteins in the purified Escherichia coli deoxyribonucleoprotein, Nucleic acids research, vol.4, pp.2725-2745, 1977.

P. H. Viollier and . Shapiro, Spatial complexity of mechanisms controlling a bacterial cell cycle, Current opinion in microbiology, vol.7, pp.572-578, 2004.

U. Von-freiesleben, M. A. Krekling, F. G. Hansen, and &. Lobner-olesen, The eclipse period of Escherichia coli, The EMBO journal, vol.19, pp.6240-6248, 2000.

A. Vujicic-zagar, R. Dulermo, M. L. Gorrec, F. Vannier, P. Servant et al., Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae, Journal of molecular biology, vol.386, pp.704-716, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00532606

B. Vukovic-nagy, B. W. Fox, and &. M. Fox, The release of a deoxyribonucleic acid fragment after x-irradiation of Micrococcus radiodurans. International journal of radiation biology and related studies in physics, chemistry, and medicine, vol.25, pp.329-337, 1974.

J. Wang, R. &. Chen, and . Julin, A single nuclease active site of the Escherichia coli RecBCD enzyme catalyzes single-stranded DNA degradation in both directions, The Journal of biological chemistry, vol.275, pp.507-513, 2000.

J. C. Wang, DNA topoisomerases, Annual review of biochemistry, vol.54, pp.665-697, 1985.

T. Weitao, K. Nordstrom, and &. S. Dasgupta, Mutual suppression of mukB and seqA phenotypes might arise from their opposing influences on the Escherichia coli nucleoid structure, Molecular microbiology, vol.34, pp.157-168, 1999.

T. Weitao, K. Nordstrom, and &. S. Dasgupta, Escherichia coli cell cycle control genes affect chromosome superhelicity, EMBO reports, vol.1, pp.494-499, 2000.
DOI : 10.1093/embo-reports/kvd106
URL : http://embor.embopress.org/content/1/6/494.full.pdf

G. R. Weller, B. Kysela, R. Roy, L. M. Tonkin, E. Scanlan et al.,

&. A. Jackson and . Doherty, Identification of a DNA nonhomologous end-joining complex in bacteria, Science, vol.297, pp.1686-1689, 2002.

M. Wery, C. L. Woldringh, and &. Rouviere-yaniv, HU-GFP and DAPI co-localize on the Escherichia coli nucleoid, Biochimie, vol.83, pp.193-200, 2001.

O. White, J. A. Eisen, J. F. Heidelberg, E. K. Hickey, J. D. Peterson et al., Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1, vol.286, pp.1571-1577, 1999.

C. L. Woldringh, E. Mulder, P. G. Huls, and &. Vischer, Toporegulation of bacterial division according to the nucleoid occlusion model, Research in microbiology, vol.142, pp.309-320, 1991.

L. J. Wu and . Errington, Nucleoid occlusion and bacterial cell division, Nature reviews. Microbiology, vol.10, pp.8-12, 2012.
DOI : 10.1038/nrmicro2671

L. J. Wu, S. Ishikawa, Y. Kawai, T. Oshima, N. Ogasawara et al., Noc protein binds to specific DNA sequences to coordinate cell division with chromosome segregation, The EMBO journal, vol.28, pp.1940-1952, 2009.

G. Xu, H. Lu, L. Wang, H. Chen, Z. Xu et al., DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans, DNA repair, vol.9, pp.805-812, 2010.

W. Xu, J. Shen, C. A. Dunn, S. &. Desai, and . Bessman, The Nudix hydrolases of Deinococcus radiodurans, Molecular microbiology, vol.39, pp.286-290, 2001.

Y. &. Yamaichi and . Niki, migS, a cis-acting site that affects bipolar positioning of oriC on the Escherichia coli chromosome, The EMBO journal, vol.23, pp.221-233, 2004.

K. Yamanaka, T. Ogura, H. Niki, and &. S. Hiraga, Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli, Molecular & general genetics : MGG, vol.250, pp.241-251, 1996.

M. Yamazoe, T. Onogi, Y. Sunako, H. Niki, K. Yamanaka et al., Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli, The EMBO journal, vol.18, pp.5873-5884, 1999.

E. L. Zechiedrich, A. B. Khodursky-&-n, and . Cozzarelli, Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli, Genes & development, vol.11, pp.2580-2592, 1997.

L. Zhang, Q. Yang, X. Luo, C. Fang, Q. Zhang et al., Knockout of crtB or crtI gene blocks the carotenoid biosynthetic pathway in Deinococcus radiodurans R1 and influences its resistance to oxidative DNA-damaging agents due to change of free radicals scavenging ability, Archives of microbiology, vol.188, pp.411-419, 2007.

H. Zhu, L. K. Wang, and &. S. Shuman, Essential constituents of the 3'-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme, The Journal of biological chemistry, vol.280, pp.33707-33715, 2005.

J. M. Zimmerman and . Battista, A ring-like nucleoid is not necessary for radioresistance in the Deinococcaceae, FEMS Microbiol Rev, vol.5, pp.1126-1145, 2005.

K. W. Bayles, Bacterial programmed cell death: making sense of a paradox, Nat Rev Microbiol, vol.12, pp.63-69, 2014.

M. Blasius, U. Hubscher, and S. Sommer, Deinococcus radiodurans: what belongs to the survival kit?, Crit Rev Biochem Mol Biol, vol.43, pp.221-238, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00297146

C. Bonacossa-de-almeida, G. Coste, S. Sommer, and A. Bailone, Quantification of RecA protein in Deinococcus radiodurans reveals involvement of RecA, but not LexA, in its regulation, Mol Genet Genomics, vol.268, pp.28-41, 2002.

J. Bos, A. A. Yakhnina, G. , and Z. , BapE DNA endonuclease induces an apoptotic-like response to DNA damage in Caulobacter, Proc Natl Acad Sci, vol.109, pp.18096-18101, 2012.

C. Bouthier-de-la-tour, S. Boisnard, C. Norais, M. Toueille, E. Bentchikou et al., The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00764859

A. Devigne, 1069-1084 its single-strand annealing activity, Molecular Microbiology, vol.96, pp.1223-1231, 2015.

S. C. Cordell, E. J. Robinson, and J. Lowe, Crystal structure of the SOS cell division inhibitor SulA and in complex with FtsZ, Proc Natl Acad Sci, vol.100, pp.7889-7894, 2003.

M. J. Daly, A new perspective on radiation resistance based on Deinococcus radiodurans, Nat Rev Microbiol, vol.7, pp.237-245, 2009.

A. Devigne, S. Mersaoui, C. Bouthier-de-la-tour, S. Sommer, and P. Servant, The PprA protein is required for accurate cell division of gamma-irradiated Deinococcus radiodurans bacteria, DNA Repair (Amst), vol.12, pp.265-272, 2013.

R. Dulermo, T. Onodera, G. Coste, F. Passot, M. Dutertre et al., Identification of new genes contributing to the extreme radioresistance of Deinococcus radiodurans using a Tn5-based transposon mutant library, PLoS ONE, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01464760

A. M. Earl, M. M. Mohundro, I. S. Mian, and J. R. Battista, The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression, J Bacteriol, vol.184, pp.6216-6224, 2002.

A. M. Earl, S. K. Rankin, K. P. Kim, O. N. Lamendola, and J. R. Battista, Genetic evidence that the uvsE gene product of Deinococcus radiodurans R1 is a UV damage endonuclease, J Bacteriol, vol.184, pp.1003-1009, 2002.

A. Erental, Z. Kalderon, A. Saada, Y. Smith, and H. Engelbergkulka, Apoptosis-like death, an extreme SOS response in Escherichia coli, mBio, vol.5, pp.1426-01414, 2014.

I. Erill, S. Campoy, B. , and J. , Aeons of distress: an evolutionary perspective on the bacterial SOS response, FEMS Microbiol Rev, vol.31, pp.637-656, 2007.

G. Gao, D. Le, L. Huang, H. Lu, I. Narumi et al., Internal promoter characterization and expression of the Deinococcus radiodurans pprI-folP gene cluster, FEMS Microbiol Lett, vol.257, pp.195-201, 2006.

A. De-groot, R. Dulermo, P. Ortet, L. Blanchard, P. Guerin et al., Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti, PLoS Genet, vol.5, p.1000434, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00459812

D. R. Harris, M. Tanaka, S. V. Saveliev, E. Jolivet, A. M. Earl et al., Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1, PLoS Biol, vol.2, p.304, 2004.

Y. Hua, I. Narumi, G. Gao, B. Tian, K. Satoh et al., PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans, 2003.

, Biochem Biophys Res Commun, vol.306, pp.354-360

O. Huisman, R. D. Ari, G. , and J. , Dissociation of tsl-tif-induced filamentation and RecA protein synthesis in Escherichia coli K-12, J Bacteriol, vol.142, pp.819-828, 1980.

E. Jolivet, F. Lecointe, G. Coste, K. Satoh, I. Narumi et al., Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1, Mol Microbiol, vol.59, pp.338-349, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00079723

K. N. Kreuzer, DNA damage responses in prokaryotes: regulating gene expression, modulating growth patterns, and manipulating replication forks, Cold Spring Harb Perspect Biol, vol.5, p.12674, 2013.

F. Lecointe, I. Shevelev, V. Bailone, A. Sommer, S. Hubscher et al., Involvement of an X family DNA polymerase in double-stranded break repair in the radioresistant organism Deinococcus radiodurans, Mol Microbiol, vol.53, pp.1721-1730, 2004.

Y. Liu, J. Zhou, M. V. Omelchenko, A. S. Beliaev, A. Venkateswaran et al., Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation, Proc Natl Acad Sci, vol.100, pp.4191-4196, 2003.

H. Lu, G. Gao, G. Xu, L. Fan, L. Yin et al., Deinococcus radiodurans PprI switches on DNA damage response and cellular survival networks after radiation damage, Mol Cell Proteomics, vol.8, pp.481-494, 2009.

R. J. Mailloux, R. Beriault, J. Lemire, R. Singh, D. R. Chenier et al., The tricarboxylic acid cycle, an ancient metabolic network with a novel twist, PLoS ONE, vol.2, p.690, 2007.

R. J. Mailloux, R. Singh, G. Brewer, C. Auger, J. Lemire et al., Alpha-ketoglutarate dehydrogenase and glutamate dehydrogenase work in tandem to modulate the antioxidant alpha-ketoglutarate during oxidative stress in Pseudomonas fluorescens, J Bacteriol, vol.191, pp.3804-3810, 2009.

R. Meima and M. E. Lidstrom, Characterization of the minimal replicon of a cryptic Deinococcus radiodurans SARK plasmid and development of versatile Escherichia coli-D. radiodurans shuttle vectors, Appl Environ Microbiol, vol.66, pp.3856-3867, 2000.

R. Meima, H. M. Rothfuss, L. Gewin, and M. E. Lidstrom, Promoter cloning in the radioresistant bacterium Deinococcus radiodurans, J Bacteriol, vol.183, pp.3169-3175, 2001.

J. H. Miller, A Short Course in Bacterial Genetics, 1992.

H. H. Nguyen, C. B. De-la-tour, M. Toueille, F. Vannier, S. Sommer et al., The essential histonelike protein HU plays a major role in Deinococcus radiodurans nucleoid compaction, Mol Microbiol, vol.73, pp.240-252, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00529821

C. Norais, P. Servant, C. Bouthier-de-la-tour, P. D. Coureux, S. Ithurbide et al., The Deinococcus radiodurans DR1245 protein, a DdrB partner homologous to YbjN proteins and reminiscent of type III secretion system chaperones, PLoS ONE, vol.8, p.56558, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00800853

C. A. Norais, S. Chitteni-pattu, E. A. Wood, R. B. Inman, and M. M. Cox, DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation, J Biol Chem, vol.284, pp.21402-21411, 2009.
DOI : 10.1074/jbc.m109.010454
URL : http://www.jbc.org/content/284/32/21402.full.pdf

, DdrO-mediated regulation in Deinococcus radiodurans 1083

, Molecular Microbiology, vol.96, pp.1069-1084, 2015.

C. Pasternak, B. Ton-hoang, G. Coste, A. Bailone, M. Chandler et al., Irradiation-induced Deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequence, PLoS Genet, vol.6, p.1000799, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00506406

K. Satoh, H. Ohba, H. Sghaier, and I. Narumi, Down-regulation of radioresistance by LexA2 in Deinococcus radiodurans, Microbiology, vol.152, pp.3217-3226, 2006.

D. Slade, R. , and M. , Oxidative stress resistance in Deinococcus radiodurans, Microbiol Mol Biol Rev, vol.75, pp.133-191, 2011.

V. Solovyev and A. Salamov, Automatic annotation of microbial genomes and metagenomic sequences, Metagenomics and Its Applications in Agriculture, Biomedicine and Environmental Studies, pp.61-78, 2011.

B. Ton-hoang, C. Pasternak, P. Siguier, C. Guynet, A. B. Hickman et al., Single-stranded DNA transposition is coupled to host replication, Cell, vol.142, pp.398-408, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00557930

M. Toueille, B. Mirabella, P. Guerin, C. Bouthier-de-la-tour, S. Boisnard et al., A comparative proteomic approach to better define Deinococcus nucleoid specificities, J Proteomics, vol.75, pp.2588-2600, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00757315

L. Tretter, A. , and V. , Alpha-ketoglutarate dehydrogenase: a target and generator of oxidative stress, Philos Trans R Soc Lond B Biol Sci, vol.360, pp.2335-2345, 2005.

D. Trusca, S. Scott, C. Thompson, and D. Bramhill, Bacterial SOS checkpoint protein SulA inhibits polymerization of purified FtsZ cell division protein, J Bacteriol, vol.180, pp.3946-3953, 1998.

A. Vujicic-zagar, R. Dulermo, M. Le-gorrec, F. Vannier, P. Servant et al., Crystal structure of the IrrE protein, a central regulator of DNA damage repair in deinococcaceae, J Mol Biol, vol.386, pp.704-716, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00532606