, References Index for Rivers (IBMR): its application to different types of river and pollution, Macrophytes in aquatic ecosystems: from biology to management, pp.153-158

I. E. Hendriks, T. J. Bouma, E. P. Morris, and C. M. Duarte, Effects of seagrasses and algae of the Caulerpa family on hydrodynamics and particle-trapping rates, Marine Biology, vol.157, pp.473-481, 2009.

A. Jampeetong and H. Brix, Effects of NH4 + concentration on growth, morphology and NH4 + uptake kinetics of Salvinia natans, Ecological Engineering, vol.35, pp.695-702, 2009.

C. G. Jones, J. H. Lawton, and M. Shachak, Organisms as ecosystem engineers Oikos, vol.69, pp.373-386, 1994.

C. G. Jones, J. H. Lawton, and M. Shachak, Positive and negative effects of organisms as physical ecosystem engineers, Ecology, vol.78, p.78, 1997.

C. A. Klausmeier, Regular and irregular patterns in semiarid vegetation, Science, vol.284, pp.1826-1828, 1999.

E. Kristensen, S. I. Ahmed, and A. H. Devol, Aerobic and anaerobic decomposition of organic matter in marine sediment: Which is fastest?, Limnology and Oceanography, vol.40, pp.1430-1437, 1995.

J. Ladd and R. Jackson, Biochemistry of ammonification. In: Stevenson FJ (ed) Nitrogen in agricultural soils vol 22, pp.173-228, 1982.

S. Lavorel, S. Díaz, J. Cornelissen, E. Garnier, S. P. Harrison et al., Plant Functional Types: Are We Getting Any Closer to the Holy Grail?, Terrestrial Ecosystems in a Changing World, pp.149-164, 2007.

S. Lefebvre, P. Marmonier, G. Pinay, O. Bour, L. Aquilina et al., Nutrient dynamics in interstitial habitats of low-order rural streams with different bedrock geology, Archiv für Hydrobiologie, vol.164, pp.169-191, 2005.
URL : https://hal.archives-ouvertes.fr/hal-01458468

O. Lejeune, M. Tlidi, and P. Couteron, Localized vegetation patches: a self-organized response to resource scarcity, Physical Review E, vol.66, p.10901, 2002.

D. G. Lemoine, F. Mermillod-blondin, M. Barrat-segretain, C. Massé, and E. Malet, The ability of aquatic macrophytes to increase root porosity and radial oxygen loss determines their resistance to sediment anoxia, Aquatic ecology, vol.46, pp.191-200, 2012.
URL : https://hal.archives-ouvertes.fr/halsde-00705753

H. Li, T. Cao, and L. Ni, Effects of ammonium on growth, nitrogen and carbohydrate metabolism of Potamogeton maackianus A, Benn Fundamental and Applied Limnology/Archiv Für Hydrobiologie, vol.170, pp.141-148, 2007.

H. Mattes and K. Kreeb, Net photosynthesis of aquatic species, mainly Potamogeton densus, as indicator of water contamination, ANGEWANDTE BOTANIK, vol.48, pp.287-297, 1974.

I. N. Mccave and J. Syvitski, Principles and methods of geological particle size analysis, Syvitski JPM (ed) Principles, Methods and Application of Particle Size Analysis, pp.3-21, 1991.

M. E. Mcclain, E. W. Boyer, C. L. Dent, S. E. Gergel, N. B. Grimm et al., Biogeochemical hot spots and hot moments at the interface of terrestrial and aquatic ecosystems Ecosystems, vol.6, pp.301-312, 2003.

N. Mori, T. Suzuki, and S. Kakuno, Noise of acoustic Doppler velocimeter data in bubbly flows, Journal of engineering mechanics, vol.133, issue.122, p.1, 2007.

J. A. Morrice, H. Valett, C. N. Dahm, and M. E. Campana, Alluvial characteristics, groundwatersurface water exchange and hydrological retention in headwater streams Hydrological Processes, vol.11, pp.253-267, 1997.

D. S. Nichols and D. R. Keeney, Nitrogen nutrition of Myriophyllum spicatum: uptake and translocation of 15N by shoots and roots, Freshwater Biology, vol.6, pp.145-154, 1976.

J. Nimptsch and S. Pflugmacher, Ammonia triggers the promotion of oxidative stress in the aquatic macrophyte Myriophyllum mattogrossense, Chemosphere, vol.66, pp.708-714, 2007.

J. M. Phillips and D. E. Walling, The particle size characteristics of finegrained channel deposits in the River Exe Basin, vol.13, pp.1-19, 1999.

S. Puijalon, T. J. Bouma, C. J. Douady, J. Van-groenendael, N. P. Anten et al., Plant resistance to mechanical stress: evidence of an avoidance-tolerance tradeoff, New Phytol, vol.191, pp.1141-1149, 2011.
URL : https://hal.archives-ouvertes.fr/halsde-00621076

S. Puijalon, J. P. Lena, N. Riviere, J. Y. Champagne, J. C. Rostan et al., Phenotypic plasticity in response to mechanical stress: hydrodynamic performance and fitness of four aquatic plant species, New Phytol, vol.177, pp.907-917, 2008.
URL : https://hal.archives-ouvertes.fr/halsde-00250585

D. Quade, Using Weighted Rankings in the Analysis of Complete Blocks with, Additive Block Effects Journal of the American Statistical Association, vol.74, pp.680-683, 1979.

M. Rietkerk and J. Van-de-koppel, Regular pattern formation in real ecosystems, Trends Ecol Evol, vol.23, pp.169-175, 2008.

H. Rudolph and J. U. Voigt, Effects of NH4 + N and NO3-N on growth and metabolism of Sphagnum magellanicum, Physiologia plantarum, vol.66, pp.339-343, 1986.

K. Sand-jensen, Influence of submerged macrophytes on sediment composition and near-bed flow in lowland streams, Freshwater Biology, vol.39, pp.663-679, 1998.

K. Sand-jensen and T. V. Madsen, Patch dynamics of the stream macrophyte, Callitriche cophocarpa Freshwater Biology, vol.27, pp.277-282, 1992.

K. Sand-jensen and J. R. Mebus, Fine-scale patterns of water velocity within macrophyte patches in streams, Oikos, vol.76, pp.169-180, 1996.

K. Sand-jensen and M. L. Pedersen, Streamlining of plant patches in streams, Freshwater Biology, vol.53, pp.714-726, 2008.

K. Sand-jensen and O. Pedersen, Velocity gradients and turbulence around macrophyte stands in streams, Freshwater Biology, vol.42, pp.315-328, 1999.

K. Sand-jensen, C. Prahl, and H. Stokholm, Oxygen release from roots of submerged aquatic macrophytes Oikos, vol.38, 1982.

K. Sandjensen, J. Borum, and T. Binzer, Oxygen stress and reduced growth of Lobelia dortmanna in sandy lake sediments subject to organic enrichment, Freshwater Biology, vol.50, pp.1034-1048, 2005.

I. Sanders, C. Heppell, J. Cotton, G. Wharton, A. Hildrew et al., Emission of methane from chalk streams has potential implications for agricultural practices, Freshwater Biology, vol.52, pp.1176-1186, 2007.

I. A. Sanders and M. Trimmer, In situ application of the 15 NO3 ? isotope pairing technique to measure denitrification in sediments at the surface watergroundwater interface, Limnology and Oceanography: Methods, vol.4, pp.142-152, 2006.

E. L. Schmidt, Nitrification in soil, FJ S (ed) Nitrogen in agricultural soils, vol.22, pp.253-288, 1982.

S. Schneider and A. Melzer, Sediment and water nutrient characteristics in patches of submerged macrophytes in running waters, Hydrobiologia, vol.527, pp.195-207, 2004.

J. Schoelynck, K. Bal, V. Verschoren, E. Penning, E. Struyf et al., Different morphology of Nuphar lutea in two contrasting aquatic environments and its effect on ecosystem engineering Earth Surface Processes and Landforms, vol.39, pp.2100-2108, 2014.

J. Schoelynck, T. De-groote, K. Bal, W. Vandenbruwaene, P. Meire et al., Selforganised patchiness and scale-dependent bio-geomorphic feedbacks in aquatic river vegetation, Ecography, vol.35, pp.760-768, 2012.

J. Schoelynck, D. Meire, K. Bal, K. Buis, P. Troch et al., Submerged macrophytes avoiding a negative feedback in reaction to hydrodynamic stress Limnologica-Ecology and Management of Inland Waters, vol.43, pp.371-380, 2013.

M. Schulz, H. P. Kozerski, T. Pluntke, and K. Rinke, The influence of macrophytes on sedimentation and nutrient retention in the lower River Spree (Germany), Water Res, vol.37, pp.569-578, 2003.

S. P. Seitzinger, Denitrification in freshwater and coastal marine ecosystems: ecological and geochemical significance, Limnology and Oceanography, vol.33, pp.702-724, 1988.
DOI : 10.4319/lo.1988.33.4part2.0702

URL : https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1988.33.4part2.0702

E. Soana and M. Bartoli, Seasonal variation of radial oxygen loss in Vallisneria spiralis L.: An adaptive response to sediment redox?, Aquatic Botany, vol.104, pp.228-232, 2013.

S. Su, Z. Yiming, Q. Jian, W. Wang, W. Yao et al., Physiological responses of Egeria densa to high ammonium concentration and nitrogen deficiency, Chemosphere, vol.86, pp.538-545, 2012.

J. Tison and B. De-foucault, Scale-dependent inhibition drives regular tussock spacing in a freshwater marsh, The American Naturalist, vol.168, pp.136-147, 2006.

W. Vandenbruwaene, S. Temmerman, T. J. Bouma, P. C. Klaassen, M. B. De-vries et al., Flow interaction with dynamic vegetation patches: Implications for biogeomorphic evolution of a tidal landscape, Journal of Geophysical Research-Earth Surface, vol.116, pp.1-13, 2011.

W. Verstraete and D. D. Focht, Biochemical ecology of nitrification and denitrification, Advances in Microbial Ecology. Springer US, pp.135-214, 1977.
DOI : 10.1007/978-1-4615-8219-9_4

E. J. Weerman, J. Van-de-koppel, E. Maarten, B. Montserrat, F. Liu et al., Spatial SelfOrganization on Intertidal Mudflats through Biophysical Stress Divergence The American Naturalist, vol.176, pp.15-32, 2010.

C. K. Wentworth, A scale of grade and class terms for clastic sediments, The Journal of Geology, vol.30, pp.377-392, 1922.

G. Wharton, J. A. Cotton, R. S. Wotton, J. Bass, C. M. Heppell et al., Macrophytes and suspension-feeding invertebrates modify flows and fine sediments in the Frome and Piddle catchments, Dorset (UK) Journal of Hydrology, vol.330, pp.171-184, 2006.

C. Wigand, M. Finn, S. Findlay, and D. Fischer, Submersed macrophyte effects on nutrient exchanges in riverine sediments Estuaries, vol.24, pp.398-406, 2001.

Y. Xie, S. An, X. Yao, K. Xiao, and C. Zhang, Short-time response in root morphology of Vallisneria natans to sediment type and water-column nutrient, Aquatic Botany, vol.81, pp.85-96, 2005.

Q. Yu, H. Wang, Y. Li, J. Shao, X. Liang et al., Effects of high nitrogen concentrations on the growth of submersed macrophytes at moderate phosphorus concentrations, Water Res, vol.83, pp.385-395, 2015.

W. Armstrong, Radial oxygen losses from intact rice roots as affected by distance from the apex, respiration and waterlogging, Physiologia plantarum, vol.25, pp.192-197, 1971.

S. J. Arnold, Morphology, Performance and Fitness American Zoologist, vol.23, pp.347-361, 1983.

A. Badin, G. Méderel, B. Béchet, D. Borschneck, and C. Delolme, Study of the aggregation of the surface layer of Technosols from stormwater infiltration basins using grain size analyses with laser diffractometry, Geoderma, vol.153, pp.163-171, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00451065

, Baptist M A flume experiment on sediment transport with flexible, submerged vegetation, International workshop on RIParian FORest vegetated channels: hydraulic, morphological and ecological aspects, pp.20-22, 2003.

N. Barbier, P. Couteron, J. Lejoly, V. Deblauwe, and O. Lejeune, Selforganized vegetation patterning as a fingerprint of climate and human impact on semiarid ecosystems, Journal of Ecology, vol.94, pp.537-547, 2006.

J. W. Barko, D. Gunnison, and S. R. Carpenter, Sediment interactions with submersed macrophyte growth and community dynamics, Aquatic Botany, vol.41, issue.91, pp.90038-90045, 1991.

J. W. Barko and R. M. Smart, Effects of organic matter additions to sediment on the growth of aquatic plants The journal of Ecology, pp.161-175, 1983.

J. W. Barko and R. M. Smart, Sedimentrelated mechanisms of growth limitation in submersed macrophytes, Ecology, vol.67, pp.1328-1340, 1986.

M. Barrat-segretain, G. Bornette, and A. Hering-vilas-bôas, Comparative abilities of vegetative regeneration among aquatic plants growing in disturbed habitats, Aquatic Botany, vol.60, pp.201-211, 1998.

M. H. Barrat-segretain, Strategies of reproduction, dispersion, and competition in river plants: A review Vegetatio, vol.123, pp.13-37, 1996.

S. C. Barrett, C. G. Eckert, and B. C. Husband, Evolutionary processes in aquatic plant populations, Aquatic Botany, vol.44, pp.105-145, 1993.

J. M. Battle and T. B. Mihuc, Decomposition dynamics of aquatic macrophytes in the lower Atchafalaya, Hydrobiologia, vol.418, pp.123-136, 2000.

M. D. Bertness and S. D. Hacker, Physical stress and positive associations among marsh plants, The American Naturalist, vol.144, pp.363-372, 1994.

G. Biehle, T. Speck, and H. C. Spatz, Hydrodynamics and biomechanics of the submerged water moss Fontinalis antipyretica-a comparison of specimens from habitats with different flow velocities, Botanica Acta, vol.111, pp.42-50, 1998.

F. Boano, J. W. Harvey, A. Marion, A. I. Packman, R. Revelli et al., Hyporheic flow and transport processes: Mechanisms, models, and biogeochemical implications, Reviews of Geophysics, vol.52, pp.603-679, 2014.

R. T. Boeger, The influence of substratum and water velocity on growth of Ranunculus aquatilis L, Ranunculaceae) Aquatic Botany, vol.42, issue.92, p.90054, 1992.

G. Bornette and S. Puijalon, Response of aquatic plants to abiotic factors: a review, Aquatic Sciences, vol.73, pp.1-14, 2010.
URL : https://hal.archives-ouvertes.fr/halsde-00561575

A. R. Bos, T. J. Bouma, G. De-kort, and M. M. Van-katwijk, Ecosystem engineering by annual intertidal seagrass beds: sediment accretion and modification Estuarine, Coastal and Shelf Science, vol.74, pp.344-348, 2007.

T. J. Bouma, S. Temmerman, L. A. Van-duren, E. Martini, W. Vandenbruwaene et al., Organism traits determine the strength of scale-dependent bio-geomorphic feedbacks: a flume study on three intertidal plant species, Geomorphology, vol.180, pp.57-65, 2013.

T. J. Bouma, D. Vries, M. B. Herman, and P. M. , Comparing ecosystem engineering efficiency of two plant species with contrasting growth strategies, Ecology, vol.91, pp.2696-2704, 2010.

T. J. Bouma, D. Vries, M. B. Low, E. Peralta, G. Tánczos et al., Tradeoffs related to ecosystem engineering: a case study on stiffness of emerging macrophytes, Ecology, vol.86, pp.2187-2199, 2005.

T. J. Bouma, M. Friedrichs, B. K. Van-wesenbeeck, S. Temmerman, G. Graf et al., Densitydependent linkage of scale-dependent feedbacks: a flume study on the intertidal macrophyte, Spartina anglica Oikos, vol.118, pp.260-268, 2009.

T. J. Bouma, L. A. Van-duren, S. Temmerman, T. Claverie, A. Blanco-garcia et al., Spatial flow and sedimentation patterns within patches of epibenthic structures: Combining field, flume and modelling experiments, Continental Shelf Research, vol.27, pp.1020-1045, 2007.
DOI : 10.1016/j.csr.2005.12.019

D. T. Britto and H. J. Kronzucker, NH4 + toxicity in higher plants: a critical review, Journal of Plant Physiology, vol.159, pp.567-584, 2002.
DOI : 10.1078/0176-1617-0774

J. F. Bruno and C. W. Kennedy, Patch-size dependent habitat modification and facilitation on New England cobble beaches by Spartina alterniflora, Oecologia, vol.122, pp.98-108, 2000.
DOI : 10.1007/pl00008841

J. F. Bruno, J. J. Stachowicz, and M. D. Bertness, Inclusion of facilitation into ecological theory, Trends Ecol Evol, vol.18, pp.119-125, 2003.
DOI : 10.1016/s0169-5347(02)00045-9

R. W. Butcher, Studies on the ecology of rivers: I. On the distribution of macrophytic vegetation in the rivers of, Britain Journal of Ecology, vol.21, pp.58-91, 1933.

J. M. Caffrey and W. M. Kemp, Influence of the submersed plant, Potamogeton perfoliatus, on nitrogen cycling in estuarine sediments, Limnol Oceanogr, vol.37, pp.1483-1495, 1992.

D. E. Canfield, Factors influencing organic carbon preservation in marine sediments, Chem Geol, vol.114, pp.315-329, 1994.
DOI : 10.1016/0009-2541(94)90061-2

T. Cao, L. Ni, and P. Xie, Acute biochemical responses of a submersed macrophyte, Potamogeton crispus L., to high ammonium in an aquarium experiment, Journal of Freshwater Ecology, vol.19, pp.279-284, 2004.
DOI : 10.1080/02705060.2004.9664542

URL : https://www.tandfonline.com/doi/pdf/10.1080/02705060.2004.9664542?needAccess=true

T. Cao, P. Xie, Z. Li, L. Ni, M. Zhang et al., Physiological stress of high NH4 + concentration in water column on the submersed macrophyte Vallisneria natans L, Bulletin of environmental contamination and toxicology, vol.82, pp.296-299, 2009.

S. R. Carpenter and D. M. Lodge, Effects of submersed macrophytes on ecosystem processes, Aquatic Botany, vol.26, issue.86, pp.90031-90039, 1986.

P. A. Chambers and J. Kalff, The influence of sediment composition and irradiance on the growth and morphology of Myriophyllum spicatum, Aquatic Botany, vol.22, pp.90003-90011, 1985.

P. A. Chambers, P. Lacoul, K. J. Murphy, and S. M. Thomaz, Global diversity of aquatic macrophytes in freshwater, Hydrobiologia, vol.595, pp.9-26, 2008.

P. A. Chambers, E. E. Prepas, and K. Gibson, Temporal and spatial dynamics in riverbed chemistry: the influence of flow and sediment composition, Canadian Journal of Fisheries and Aquatic Sciences, vol.49, pp.2128-2140, 1992.

P. D. Champion and C. C. Tanner, Seasonality of macrophytes and interaction with flow in a New Zealand lowland stream Hydrobiologia, vol.441, pp.1-12, 2000.

Z. Chen, C. Jiang, and H. Nepf, Flow adjustment at the leading edge of a submerged aquatic canopy, Water Resources Research, vol.49, pp.5537-5551, 2013.

E. Clarke and A. H. Baldwin, Responses of wetland plants to ammonia and water level, Ecological Engineering, vol.18, pp.80-85, 2002.
DOI : 10.1016/s0925-8574(01)00080-5

F. W. Clarke, Vegetation growth in rivers: influences upon sediment and nutrient dynamics Progress in, Physical Geography, vol.695, pp.159-172, 1920.

S. J. Clarke and G. Wharton, Sediment nutrient characteristics and aquatic macrophytes in lowland English rivers, Science of The Total Environment, vol.266, pp.754-757, 2001.

T. D. Colmer, Long-distance transport of gases in plants: a perspective on internal aeration and radial oxygen loss from roots Plant, Cell & Environment, vol.26, pp.17-36, 2003.

D. Corenblit, A. M. Gurnell, J. Steiger, and E. Tabacchi, Reciprocal adjustments between landforms and living organisms: Extended geomorphic evolutionary insights CATENA, vol.73, pp.261-273, 2008.
DOI : 10.1016/j.catena.2007.11.002

D. Corenblit, J. Steiger, A. M. Gurnell, and R. J. Naiman, Plants intertwine fluvial landform dynamics with ecological succession and natural selection: a niche construction perspective for riparian systems Global, Ecology and Biogeography, vol.18, pp.507-520, 2009.

L. Cornacchia, J. Koppel, D. Wal, G. Wharton, S. Puijalon et al., Landscapes of facilitation: how selforganized patchiness of aquatic macrophytes promotes diversity in streams, Ecology, vol.99, pp.832-847, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01759668

J. A. Cotton, C. M. Heppell, G. Wharton, and J. A. Bass, In-channel storage of fine sediment in vegetated rivers: implications for catchment sediment budgets, Materials and Geoenvironment, vol.52, p.200, 2005.

J. A. Cotton, G. Wharton, J. Bass, C. M. Heppell, and R. S. Wotton, The effects of seasonal changes to in-stream vegetation cover on patterns of flow and accumulation of sediment, Geomorphology, vol.77, pp.320-334, 2006.

K. W. Cummins, An evaluation of some techniques for the collection and analysis of benthic samples with special emphasis on lotic waters, The American Midland Naturalist, vol.67, pp.477-504, 1962.

C. N. Dahm, E. H. Trotter, and J. R. Sedell, Role of anaerobic zones and processes in stream ecosystem productivity Chemical Quality of Water and the Hydrologic Cycle, pp.157-178, 1987.

C. N. Dahm, H. M. Valett, C. V. Baxter, and W. Woessner, Hyporheic zones Methods in stream ecology, pp.107-119, 1996.

F. H. Dawson, Water flow and the vegetation of running waters. In: Symones JJ (ed) Vegetation of inland waters, pp.283-309, 1988.

W. Dean, Determination of carbonate and organic matter in calcareous sediments and sedimentary rocks by loss on ignition: comparison with other methods, Journal of Sedimentary Research, vol.44, 1974.

C. M. Duarte, Nutrient concentration of aquatic plants: patterns across species, Limnology and Oceanography, vol.37, pp.882-889, 1992.
DOI : 10.4319/lo.1992.37.4.0882

URL : https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1992.37.4.0882

C. W. Dunnett, A Multiple Comparison Procedure for Comparing Several Treatments with a, Control Journal of the American Statistical Association, vol.50, pp.1096-1121, 1955.
DOI : 10.2307/2281208

C. W. Dunnett, New Tables for Multiple Comparisons with a, Control Biometrics, vol.20, pp.482-491, 1964.

S. H. Ensign and M. W. Doyle, Nutrient spiraling in streams and river networks, Journal of Geophysical Research, vol.111, 2006.
DOI : 10.1029/2005jg000114

URL : https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2005JG000114

D. H. Erwin, Macroevolution of ecosystem engineering, niche construction and diversity, Trends Ecol Evol, vol.23, pp.304-310, 2008.

G. M. Filippelli, The global phosphorus cycle: past, present, and future Elements, vol.4, pp.89-95, 2008.

S. Findlay, Importance of surface-subsurface exchange in stream ecosystems: The hyporheic zone, Limnology and Oceanography, vol.40, pp.159-164, 1995.

A. M. Folkard, Hydrodynamics of model Posidonia oceanica patches in shallow water, Limnol Oceanogr, vol.50, pp.1592-1600, 2005.

M. Fonseca and J. S. Fisher, A comparison of canopy friction and sediment movement between four species of seagrass with reference to their ecology and restoration, Marine Ecology Progress Series, vol.29, pp.15-22, 1986.

R. Forman, Macrophyte presence is an indicator of enhanced denitrification and nitrification in sediments of a temperate restored agricultural stream, Land Mosaics: The ecology of landscapes and regions, vol.668, pp.21-34, 1995.

P. Franklin, M. Dunbar, and P. Whitehead, Flow controls on lowland river macrophytes: a review Sci Total Environ, vol.400, pp.369-378, 2008.

E. Gacia, T. C. Granata, and C. M. Duarte, An approach to measurement of particle flux and sediment retention within seagrass (Posidonia oceanica) meadows, Aquatic Botany, vol.65, pp.255-268, 1999.

R. García-ruiz, S. N. Pattinson, and B. A. Whitton, Kinetic parameters of denitrification in a river continuum, Applied and environmental microbiology, vol.64, pp.2533-2538, 1998.

G. Gerloff and P. Krombholz, Tissue analysis as a measure of nutrient availability for the growth of angiosperm aquatic plants, Limnology and Oceanography, pp.529-537, 1966.

D. G. Goring and V. I. Nikora, Despiking acoustic Doppler velocimeter data, Journal of Hydraulic Engineering, vol.128, pp.117-126, 2002.

W. W. Gregg and F. L. Rose, The effects of aquatic macrophytes on the stream microenvironment, Aquatic Botany, vol.14, pp.309-324, 1982.

J. P. Grime, Plant strategies, vegetation processes, and ecosystem properties. Second edn, 2002.

N. Gross, T. M. Robson, S. Lavorel, C. Albert, Y. L. Bagoussepinguet et al., Plant response traits mediate the effects of subalpine grasslands on soil moisture, New Phytologist, vol.180, pp.652-662, 2008.
URL : https://hal.archives-ouvertes.fr/halsde-00377965

V. Gulis and K. Suberkropp, Leaf litter decomposition and microbial activity in nutrientenriched and unaltered reaches of a headwater stream, Freshwater Biology, vol.48, pp.123-134, 2003.

J. L. Gutiérrez and C. G. Jones, Ecosystem Engineers, 2001.

J. L. Gutiérrez and C. G. Jones, Physical ecosystem engineers as agents of biogeochemical heterogeneity, Bioscience, vol.56, p.56, 2006.

B. T. Hargrave, Aerobic decomposition of sediment and detritus as a function of particle surfacearea and organic content, Limnology and Oceanography, vol.17, pp.583-596, 1972.

S. M. Haslam, River plants, 1978.

A. Hastings, J. E. Byers, J. A. Crooks, K. Cuddington, C. G. Jones et al., Ecosystem engineering in space and time, Ecol Lett, vol.10, pp.153-164, 2007.

J. Haury, M. Peltre, M. Trémolières, J. Barbe, G. Thiébaut et al., A new method to assess water trophy and organic pollution-the Macrophyte Biological Index for Rivers (IBMR): its application to different types of river and pollution, Macrophytes in aquatic ecosystems: from biology to management, pp.153-158, 2006.
URL : https://hal.archives-ouvertes.fr/hal-01453662

J. I. Hedges, G. L. Cowie, J. E. Richey, P. D. Quay, R. Benner et al., Origins and processing of organic matter in the Amazon River as indicated by carbohydrates and amino acids, Limnology and Oceanography, vol.39, pp.743-761, 1994.

S. P. Hendricks and D. S. White, Hummocking by lotic Chara: Observations on alterations of hyporheic temperature patterns, Aquatic Botany, vol.31, issue.88, pp.90036-90044, 1988.

I. E. Hendriks, T. J. Bouma, E. P. Morris, and C. M. Duarte, Effects of seagrasses and algae of the Caulerpa family on hydrodynamics and particle-trapping rates, Marine Biology, vol.157, pp.473-481, 2009.

I. E. Hendriks, T. Sintes, T. J. Bouma, and C. M. Duarte, Experimental assessment and modeling evaluation of the effects of the seagrass Posidonia oceanica on flow and particle trapping, Marine Ecology Progress Series, vol.356, pp.163-173, 2008.

D. Hillel, Environmental soil physics: Fundamentals, applications, and environmental considerations, 1998.

J. Hilton, M. O'hare, M. J. Bowes, and J. I. Jones, How green is my river? A new paradigm of eutrophication in rivers, Science of The Total Environment, vol.365, pp.66-83, 2006.

T. G. Horvath, Retention of particulate matter by macrophytes in a first-order stream, Aquatic Botany, vol.78, pp.27-36, 2004.

H. Hynes, Plastic responses morphology of Potamogeton pectinatus L to sediment and above-sediment conditions at two sites in the northern Baltic proper, Idestam-Almquist J, Kautsky L, vol.52, pp.205-216, 1970.

V. Ittekkot, Global trends in the nature of organic matter in river suspensions, Nature, vol.332, p.436, 1988.

W. F. James, J. W. Barko, and M. G. Butler, Shear stress and sediment resuspension in relation to submersed macrophyte biomass, Hydrobiologia, vol.515, pp.181-191, 2004.

A. Jampeetong and H. Brix, Effects of NH4 + concentration on growth, morphology and NH4 + uptake kinetics of Salvinia natans, Ecological Engineering, vol.35, pp.695-702, 2009.

G. A. Janauer, Is what has been measured of any direct relevance to the success of the macrophyte in its particular environment, Journal of Limnology, vol.60, pp.33-38, 2001.

C. G. Jones, J. H. Lawton, and M. Shachak, Organisms as ecosystem engineers Oikos, vol.69, pp.373-386, 1994.

C. G. Jones, J. H. Lawton, and M. Shachak, Positive and negative effects of organisms as physical ecosystem engineers, Ecology, vol.78, p.78, 1997.

M. J. Kemp and W. K. Dodds, Centimeter-scale patterns in dissolved oxygen and nitrification rates in a prairie stream, Journal of the North American Benthological Society, vol.20, pp.347-357, 2001.

C. A. Klausmeier, Regular and irregular patterns in semiarid vegetation, Science, vol.284, pp.1826-1828, 1999.
DOI : 10.1126/science.284.5421.1826

E. W. Koch, Beyond light: Physical, geological, and geochemical parameters as possible submersed aquatic vegetation habitat requirements Estuaries, vol.24, pp.1-17, 2001.
DOI : 10.2307/1352808

M. Koehl, When does morphology matter?, Annual Review of Ecology and Systematics, vol.27, pp.501-542, 1996.
DOI : 10.1146/annurev.ecolsys.27.1.501

M. Koehl, How does morphology affect performance in variable environments? In: BR GPaG (ed) Search of the causes of evolution. From field observations to mechanisms, pp.177-191, 2010.

W. Koerselman and F. Arthur, The Vegetation N:P Ratio: a New Tool to Detect the Nature of, Nutrient Limitation Journal of Applied Ecology, vol.33, pp.1441-1450, 1996.

E. Kristensen, S. I. Ahmed, and A. H. Devol, Aerobic and anaerobic decomposition of organic matter in marine sediment: Which is fastest?, Limnology and Oceanography, vol.40, pp.1430-1437, 1995.

J. Ladd and R. Jackson, Biochemistry of ammonification. In: Stevenson FJ (ed) Nitrogen in agricultural soils vol 22, pp.173-228, 1982.

B. Lamberti-raverot and S. Puijalon, Nutrient enrichment affects the mechanical resistance of aquatic plants, J Exp Bot, vol.63, pp.6115-6123, 2012.
URL : https://hal.archives-ouvertes.fr/halsde-00756704

S. Lavorel, S. Díaz, J. Cornelissen, E. Garnier, S. P. Harrison et al., Plant Functional Types: Are We Getting Any Closer to the Holy Grail?, Terrestrial Ecosystems in a Changing World, pp.149-164, 2007.

S. Lavorel and É. Garnier, Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy Grail, Functional Ecology, vol.16, pp.545-556, 2002.
DOI : 10.1046/j.1365-2435.2002.00664.x

URL : https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2435.2002.00664.x

S. Lavorel, S. Mcintyre, J. Landsberg, and T. Forbes, Plant functional classifications: from general groups to specific groups based on response to disturbance, Trends Ecol Evol, vol.12, pp.1219-1225, 1997.
DOI : 10.1016/s0169-5347(97)01219-6

S. Lefebvre, P. Marmonier, G. Pinay, O. Bour, L. Aquilina et al., Nutrient dynamics in interstitial habitats of low-order rural streams with different bedrock geology, Archiv für Hydrobiologie, vol.164, pp.169-191, 2005.
URL : https://hal.archives-ouvertes.fr/hal-01458468

A. Lehmann, E. Castella, and J. B. Lachavanne, Morphological traits and spatial heterogeneity of aquatic plants along sediment and depth gradients, vol.55, pp.281-299, 1997.

O. Lejeune, M. Tlidi, and P. Couteron, Localized vegetation patches: a self-organized response to resource scarcity, Physical Review E, vol.66, p.10901, 2002.
DOI : 10.1103/physreve.66.010901

D. G. Lemoine, F. Mermillod-blondin, M. Barrat-segretain, C. Massé, and E. Malet, The ability of aquatic macrophytes to increase root porosity and radial oxygen loss determines their resistance to sediment anoxia, Aquatic ecology, vol.46, pp.191-200, 2012.
URL : https://hal.archives-ouvertes.fr/halsde-00705753

H. Li, T. Cao, and L. Ni, Effects of ammonium on growth, nitrogen and carbohydrate metabolism of Potamogeton maackianus A, Benn Fundamental and Applied Limnology/Archiv Für Hydrobiologie, vol.170, pp.141-148, 2007.

C. Liu and H. Nepf, Sediment deposition within and around a finite patch of model vegetation over a range of channel velocity, Water Resour Res, vol.52, pp.600-612, 2016.

D. M. Lodge, Herbivory on freshwater macrophytes Aquatic Botany, vol.41, pp.90044-90050, 1991.

J. Luc, Dissolved and suspended matter transported by the Girou River (France): mechanical and chemical erosion rates in a calcareous molasse basin, Hydrological Sciences Journal, vol.31, pp.61-79, 1986.

J. D. Madsen, P. A. Chambers, W. F. James, E. W. Koch, and D. F. Westlake, The interaction between water movement, sediment dynamics and submersed macrophytes, Hydrobiologia, vol.444, pp.71-84, 2001.

T. V. Madsen and N. Cedergreen, Sources of nutrients to rooted submerged macrophytes growing in a nutrient-rich stream, Freshwater Biology, vol.47, pp.283-291, 2002.

A. Marion, V. Nikora, S. Puijalon, T. Bouma, K. Koll et al., Aquatic interfaces: a hydrodynamic and ecological perspective, Journal of Hydraulic Research, vol.52, pp.744-758, 2014.
DOI : 10.1080/00221686.2014.968887

URL : https://hal.archives-ouvertes.fr/hal-01113032

H. Mattes and K. Kreeb, Net photosynthesis of aquatic species, mainly Potamogeton densus, as indicator of water contamination, ANGEWANDTE BOTANIK, vol.48, pp.287-297, 1974.

B. Matthews, L. D. Meester, C. G. Jones, B. W. Ibelings, T. J. Bouma et al., Under niche construction: an operational bridge between ecology, evolution, and ecosystem science, Ecological Monographs, vol.84, pp.245-263, 2014.
DOI : 10.1890/13-0953.1

URL : http://www.vliz.be/imisdocs/publications/50/261850.pdf

I. N. Mccave and J. Syvitski, Principles and methods of geological particle size analysis, Syvitski JPM (ed) Principles, Methods and Application of Particle Size Analysis, pp.3-21, 1991.

M. E. Mcclain, E. W. Boyer, C. L. Dent, S. E. Gergel, N. B. Grimm et al., Biogeochemical hot spots and hot moments at the interface of terrestrial and aquatic ecosystems Ecosystems, vol.6, pp.301-312, 2003.

J. L. Meyer and G. E. Likens, Transport and Transformation of Phosphorus in a, Forest Stream Ecosystem Ecology, vol.60, pp.1255-1269, 1979.

O. Miler, I. Albayrak, V. Nikora, T. Crane, O. 'hare et al., Biomechanics of aquatic plants and its role in flow-vegetation interactions. Paper presented at the RiverFlow Braunschweig, Aquatic Sciences, vol.74, pp.31-44, 2010.

G. W. Mninshall, Role of Allochthonous Detritus in the Trophic Structure of a, Woodland Springbrook Community Ecology, vol.48, pp.139-149, 1967.

C. Mony, S. Puijalon, and G. Bornette, Resprouting response of aquatic clonal plants to cutting may explain their resistance to spate flooding, Folia Geobotanica, vol.46, pp.155-164, 2011.
URL : https://hal.archives-ouvertes.fr/halsde-00601962

N. Mori, T. Suzuki, and S. Kakuno, Noise of acoustic Doppler velocimeter data in bubbly flows, Journal of engineering mechanics, vol.133, issue.122, p.1, 2007.

J. A. Morrice, H. Valett, C. N. Dahm, and M. E. Campana, Alluvial characteristics, groundwater-surface water exchange and hydrological retention in headwater streams Hydrological Processes, vol.11, pp.253-267, 1997.

H. M. Nepf, Flow and transport in regions with aquatic vegetation Annual review of fluid mechanics, vol.44, pp.123-142, 2012.

H. Nepf and E. R. Vivoni, Flow structure in depthlimited, vegetated flow Journal of Geophysical Research, vol.105, pp.28547-28557, 1978.

J. D. Newbold, J. W. Elwood, O. Neill, R. V. Winkle, and W. V. , Measuring nutrient spiralling in streams, Canadian Journal of Fisheries and Aquatic Sciences, vol.38, pp.860-863, 1981.
DOI : 10.1139/f81-114

D. S. Nichols and D. R. Keeney, Nitrogen nutrition of Myriophyllum spicatum: uptake and translocation of 15N by shoots and roots, Freshwater Biology, vol.6, pp.145-154, 1976.

J. Nimptsch and S. Pflugmacher, Ammonia triggers the promotion of oxidative stress in the aquatic macrophyte Myriophyllum mattogrossense, Chemosphere, vol.66, pp.708-714, 2007.

O. Hare, M. T. Hutchinson, K. A. Clarke, and R. T. , The drag and reconfiguration experienced by five macrophytes from a lowland river, Aquatic Botany, vol.86, pp.253-259, 2007.

F. J. Odling-smee, Niche-constructing phenotypes, The role of behavior in evolution, pp.73-132, 1988.

F. J. Odling-smee, K. N. Laland, and M. W. Feldman, Niche construction: the neglected process in evolution, vol.37, 2003.

J. Odling-smee, D. H. Erwin, E. P. Palkovacs, M. W. Feldman, and K. N. Laland, Niche construction theory: a practical guide for ecologists, The Quarterly review of biology, vol.88, pp.3-28, 2013.
DOI : 10.1086/669266

T. Orghidan, Ein neuer Lebensraum des unterirdischen Wassers: der hyporheische Biotop Archiv für Hydrobiologie, vol.55, pp.392-414, 1959.

. Ozimek, Growth and nutrient uptake by two species of Elodea in experimental conditions and their role in nutrient accumulation in a macrophyte, 1993.

M. A. Palmer and N. L. Poff, The influence of environmental heterogeneity on patterns and processes in streams, Journal of the North American Benthological Society, vol.16, pp.169-173, 1997.

G. Peralta, F. G. Brun, I. Hernández, J. J. Vergara, and J. L. Pérez-lloréns, Morphometric variations as acclimation mechanisms in Zostera noltii beds, Estuarine, Coastal and Shelf Science, vol.64, pp.347-356, 2005.
DOI : 10.1016/j.ecss.2005.02.027

E. L. Petticrew and J. Kalff, Water flow and clay retention in submerged macrophyte beds, Canadian Journal of Fisheries and Aquatic Sciences, vol.49, pp.2483-2489, 1992.
DOI : 10.1139/f92-274

J. M. Phillips and D. E. Walling, The particle size characteristics of finegrained channel deposits in the River Exe Basin, vol.13, pp.1-19, 1999.

S. T. Pickett and P. S. White, Patch dynamics: a synthesis, The ecology of natural disturbance and patch dynamics, pp.371-384, 1985.

S. T. Pickett, J. Wu, and M. Cadenasso, Patch dynamics and the ecology of disturbed ground: a framework for synthesis, Walker LR (ed) Ecosystems of the Disturbed Ground, pp.707-722, 1999.

E. Pip and G. Robinson, A comparison of algal periphyton composition on eleven species of submerged macrophytes, Hydrobiological Bulletin, vol.18, pp.109-118, 1984.

T. Pluntke, H. Kozerski, R. J. Naiman, G. Bretschko, J. R. Karr et al., Patch dynamics in lotic systems: the stream as a mosaic, Particle trapping on leaves and on the bottom in simulated submerged plant stands Hydrobiologia, vol.506, pp.503-524, 1988.

S. Puijalon and G. Bornette, Morphological variation of two taxonomically distant plant species along a natural flow velocity gradient, New Phytologist, vol.163, pp.651-660, 2004.
URL : https://hal.archives-ouvertes.fr/halsde-00151937

S. Puijalon and G. Bornette, Phenotypic plasticity and mechanical stress: biomass partitioning and clonal growth of an aquatic plant species, Am J Bot, vol.93, pp.1090-1099, 2006.
URL : https://hal.archives-ouvertes.fr/halsde-00151412

S. Puijalon and G. Bornette, Multi-scale macrophyte responses to hydrodynamic stress and disturbances: adaptive strategies and biodiversity patterns, pp.261-273, 2013.
DOI : 10.1002/9781118526576.ch15

S. Puijalon, G. Bornette, and P. Sagnes, Adaptations to increasing hydraulic stress: morphology, hydrodynamics and fitness of two higher aquatic plant species, J Exp Bot, vol.56, pp.777-786, 2005.
DOI : 10.1093/jxb/eri063

URL : https://hal.archives-ouvertes.fr/hal-00182525

S. Puijalon, T. J. Bouma, C. J. Douady, J. Van-groenendael, N. P. Anten et al., Plant resistance to mechanical stress: evidence of an avoidance-tolerance trade-off, New Phytol, vol.191, pp.1141-1149, 2011.
URL : https://hal.archives-ouvertes.fr/halsde-00621076

S. Puijalon, T. J. Bouma, J. Van-groenendael, and G. Bornette, Clonal plasticity of aquatic plant species submitted to mechanical stress: escape versus resistance strategy, Annals of botany, vol.102, pp.989-996, 2008.
URL : https://hal.archives-ouvertes.fr/halsde-00338819

S. Puijalon, J. P. Lena, and G. Bornette, Interactive effects of nutrient and mechanical stresses on plant morphology, Ann Bot, vol.100, pp.1297-1305, 2007.
DOI : 10.1093/aob/mcm226

URL : https://hal.archives-ouvertes.fr/hal-00182524

S. Puijalon, J. P. Lena, N. Riviere, J. Y. Champagne, J. C. Rostan et al., Phenotypic plasticity in response to mechanical stress: hydrodynamic performance and fitness of four aquatic plant species, New Phytol, vol.177, pp.907-917, 2008.
URL : https://hal.archives-ouvertes.fr/halsde-00250585

D. Quade, Using Weighted Rankings in the Analysis of Complete Blocks with, Additive Block Effects Journal of the American Statistical Association, vol.74, pp.680-683, 1979.

E. Racchetti, D. Longhi, C. Ribaudo, E. Soana, and M. Bartoli, Nitrogen uptake and coupled nitrification-denitrification in riverine sediments with benthic microalgae and rooted macrophytes, Aquatic Sciences, vol.79, pp.487-505, 2017.

M. Rietkerk and J. Van-de-koppel, Regular pattern formation in real ecosystems, Trends Ecol Evol, vol.23, pp.169-175, 2008.
DOI : 10.1016/j.tree.2007.10.013

T. Riis and B. Biggs, Hydrologic and hydraulic control of macrophyte establishment and performance in streams, Limnology and Oceanography, vol.48, pp.1488-1497, 2003.

T. V. Royer, J. L. Tank, and M. B. David, Transport and Fate of Nitrate in Headwater Agricultural Streams in, Illinois Journal of Environmental Quality, vol.33, pp.1296-1304, 2004.

H. Rudolph and J. U. Voigt, Effects of NH4 + N and NO3-N on growth and metabolism of Sphagnum magellanicum, Physiologia plantarum, vol.66, pp.339-343, 1986.

K. Ruttenberg, The global phosphorus cycle Treatise on geochemistry, vol.8, p.682, 2003.

K. Sand-jensen, Macrophytes as biological engineers in the ecology of Danish streams, Freshwater Biology. Priorities and Development in Danish Research. G.E.C. Gad, pp.74-101, 1997.

K. Sand-jensen, Influence of submerged macrophytes on sediment composition and near-bed flow in lowland streams, Freshwater Biology, vol.39, pp.663-679, 1998.

K. Sand-jensen, Drag and reconfiguration of freshwater macrophytes, Freshwater Biology, vol.48, pp.271-283, 2003.
DOI : 10.1046/j.1365-2427.2003.00998.x

K. Sand-jensen and T. V. Madsen, Patch dynamics of the stream macrophyte, Callitriche cophocarpa Freshwater Biology, vol.27, pp.277-282, 1992.

K. Sand-jensen and J. R. Mebus, Fine-scale patterns of water velocity within macrophyte patches in streams, Oikos, vol.76, pp.169-180, 1996.

K. Sand-jensen and M. L. Pedersen, Streamlining of plant patches in streams, Freshwater Biology, vol.53, pp.714-726, 2008.

K. Sand-jensen and O. Pedersen, Velocity gradients and turbulence around macrophyte stands in streams, Freshwater Biology, vol.42, pp.315-328, 1999.

K. Sandjensen, J. Borum, and T. Binzer, Oxygen stress and reduced growth of Lobelia dortmanna in sandy lake sediments subject to organic enrichment, Freshwater Biology, vol.50, pp.1034-1048, 2005.

K. Sand-jensen, C. Prahl, and H. Stokholm, Oxygen release from roots of submerged aquatic macrophytes Oikos, vol.38, 1982.

K. Sand-jensen and M. Søndergaard, Distribution and quantitative development of aquatic macrophytes in relation to sediment characteristics in oligotrophic Lake Kalgaard, Denmark Freshwater Biology, vol.9, pp.1-11, 1979.

I. Sanders, C. Heppell, J. Cotton, G. Wharton, A. Hildrew et al., Emission of methane from chalk streams has potential implications for agricultural practices, Freshwater Biology, vol.52, pp.1176-1186, 2007.

I. A. Sanders and M. Trimmer, In situ application of the 15 NO3 ? isotope pairing technique to measure denitrification in sediments at the surface watergroundwater interface, Limnology and Oceanography: Methods, vol.4, pp.142-152, 2006.

L. Santamaría, Why are most aquatic plants widely distributed? Dispersal, clonal growth and small-scale heterogeneity in a stressful environment, Acta Oecologica, vol.23, pp.1146-1149, 2002.

E. L. Schmidt, Nitrification in soil, FJ S (ed) Nitrogen in agricultural soils, vol.22, pp.253-288, 1982.

S. Schneider and A. Melzer, Sediment and water nutrient characteristics in patches of submerged macrophytes in running waters, Hydrobiologia, vol.527, pp.195-207, 2004.

J. Schoelynck, K. Bal, V. Verschoren, E. Penning, E. Struyf et al., Different morphology of Nuphar lutea in two contrasting aquatic environments and its effect on ecosystem engineering Earth Surface Processes and Landforms, vol.39, pp.2100-2108, 2014.

J. Schoelynck, S. Creëlle, K. Buis, D. Mulder, T. Emsens et al., What is a macrophyte patch? Patch identification in aquatic ecosystems and guidelines for consistent delineation Ecohydrology & Hydrobiology Schoelynck, Ecography, vol.35, pp.760-768, 2012.

J. Schoelynck, D. Meire, K. Bal, K. Buis, P. Troch et al., Submerged macrophytes avoiding a negative feedback in reaction to hydrodynamic stress Limnologica-Ecology and Management of Inland Waters, vol.43, pp.371-380, 2013.

M. Schulz and J. Kohler, A simple model of phosphorus retention evoked by submerged macrophytes in lowland rivers, Hydrobiologia, vol.563, pp.521-525, 2006.

M. Schulz, H. P. Kozerski, T. Pluntke, and K. Rinke, The influence of macrophytes on sedimentation and nutrient retention in the lower River Spree (Germany), Water Res, vol.37, pp.569-578, 2003.

J. Schutten, J. Dainty, and A. J. Davy, Root anchorage and its significance for submerged plants in shallow lakes, Journal of Ecology, vol.93, pp.556-571, 2005.

J. Schutten and A. J. Davy, Predicting the hydraulic forces on submerged macrophytes from current velocity, biomass and morphology Oecologia, vol.123, pp.445-452, 2000.

S. P. Seitzinger, Denitrification in freshwater and coastal marine ecosystems: ecological and geochemical significance, Limnology and Oceanography, vol.33, pp.702-724, 1988.

H. Silvennoinen, A. Liikanen, J. Torssonen, F. Stange, C. Martikainen et al., Denitrification and nitrous oxide effluxes in boreal, eutrophic river sediments under increasing nitrate load: a laboratory microcosm study, Biogeochemistry, vol.91, pp.105-116, 2008.
DOI : 10.1007/s10533-008-9262-z

E. Soana and M. Bartoli, Seasonal variation of radial oxygen loss in Vallisneria spiralis L.: An adaptive response to sediment redox?, Aquatic Botany, vol.104, pp.228-232, 2013.

D. L. Strayer and H. M. Malcom, Submersed vegetation as habitat for invertebrates in the Hudson River estuary Estuaries and Coasts, vol.30, pp.253-264, 2007.

S. Su, Z. Yiming, Q. Jian, W. Wang, W. Yao et al., Physiological responses of Egeria densa to high ammonium concentration and nitrogen deficiency, Chemosphere, vol.86, pp.538-545, 2012.

S. E. Sultan, Evolutionary Implications of Phenotypic Plasticity in Plants, Evolutionary Biology, vol.21, pp.127-178, 1987.

S. E. Sultan, Phenotypic plasticity for plant development, function and life history, Trends in Plant Science, vol.5, pp.537-542, 2000.
DOI : 10.1016/s1360-1385(00)01797-0

J. Tison and B. De-foucault, Flora Gallica-Flore de France, 2014.

M. Trémolières, Plant response strategies to stress and disturbance: the case of aquatic plants, Journal of Biosciences, vol.29, pp.461-470, 2004.

J. R. Usherwood, A. R. Ennos, and D. J. Ball, Mechanical and anatomical adaptations in terrestrial and aquatic buttercups to their respective environments, J Exp Bot, vol.48, pp.1469-1475, 1997.
DOI : 10.1093/jxb/48.7.1469

URL : https://academic.oup.com/jxb/article-pdf/48/7/1469/1397471/48-7-1469.pdf

J. Van-de-koppel and C. M. Crain, Scale-dependent inhibition drives regular tussock spacing in a freshwater marsh, The American Naturalist, vol.168, pp.136-147, 2006.

B. K. Van-wesenbeeck, J. Van-de-koppel, P. Herman, and T. J. Bouma, Does scale-dependent feedback explain spatial complexity in salt-marsh ecosystems?, Oikos, vol.117, pp.152-159, 2008.

W. Vandenbruwaene, S. Temmerman, T. J. Bouma, P. C. Klaassen, M. B. De-vries et al., Flow interaction with dynamic vegetation patches: Implications for biogeomorphic evolution of a tidal landscape, Journal of Geophysical Research-Earth Surface, vol.116, pp.1-13, 2011.

J. Vandermeer, The niche construction paradigm in ecological time Ecological modelling, vol.214, pp.385-390, 2008.
DOI : 10.1016/j.ecolmodel.2008.03.009

W. Verstraete and D. D. Focht, Biochemical ecology of nitrification and denitrification, Advances in Microbial Ecology. Springer US, pp.135-214, 1977.
DOI : 10.1007/978-1-4615-8219-9_4

W. F. Vincent and M. T. Downes, Variation in nutrient removal from a stream by watercress, Nasturtium officinale R. Br.) Aquatic Botany, vol.9, issue.80, pp.90024-90032, 1980.

C. Violle, M. Navas, D. Vile, E. Kazakou, C. Fortunel et al., Let the concept of trait be functional! Oikos, vol.116, pp.882-892, 2007.

S. Vogel, Drag and flexibility in sessile organisms, American Zoologist, vol.24, pp.37-44, 1984.

S. Vogel and S. Vogel, Life in moving fluids: the physical biology of flow, Journal of the North American Benthological Society, vol.8, pp.2-8, 1989.

E. J. Weerman, J. Van-de-koppel, E. Maarten, B. Montserrat, F. Liu et al., Spatial SelfOrganization on Intertidal Mudflats through Biophysical Stress Divergence The American Naturalist, vol.176, pp.15-32, 2010.

C. K. Wentworth, A scale of grade and class terms for clastic sediments, The Journal of Geology, vol.30, pp.377-392, 1922.

R. G. Wetzel, A comparative study of the primary production of higher aquatic plants, periphyton, and phytoplankton in a large, shallow lake Internationale Revue der gesamten, Hydrobiologie und Hydrographie, vol.49, pp.1-61, 1964.

G. Wharton, J. A. Cotton, R. S. Wotton, J. Bass, C. M. Heppell et al., Macrophytes and suspension-feeding invertebrates modify flows and fine sediments in the Frome and Piddle catchments, Dorset (UK) Journal of Hydrology, vol.330, pp.171-184, 2006.

C. Wigand, M. Finn, S. Findlay, and D. Fischer, Submersed macrophyte effects on nutrient exchanges in riverine sediments Estuaries, vol.24, pp.398-406, 2001.

K. O. Winemiller, A. S. Flecker, and D. J. Hoeinghaus, Patch dynamics and environmental heterogeneity in lotic ecosystems, Journal of the North American Benthological Society, vol.29, pp.84-99, 2010.

S. R. Wolfer and D. Straile, Spatio-temporal dynamics and plasticity of clonal architecture in Potamogeton perfoliatus, Aquatic Botany, vol.78, pp.307-318, 2004.

S. M. Wondzell, The role of the hyporheic zone across stream networks Hydrological Processes, vol.25, pp.3525-3532, 2011.

Y. Xie, S. An, X. Yao, K. Xiao, and C. Zhang, Short-time response in root morphology of Vallisneria natans to sediment type and water-column nutrient, Aquatic Botany, vol.81, pp.85-96, 2005.

Q. Yu, H. Wang, Y. Li, J. Shao, X. Liang et al., Effects of high nitrogen concentrations on the growth of submersed macrophytes at moderate phosphorus concentrations, Water Res, vol.83, pp.385-395, 2015.

L. Zong and H. Nepf, Flow and deposition in and around a finite patch of vegetation Geomorphology, vol.116, pp.363-372, 2010.

L. Zong and H. Nepf, Spatial distribution of deposition within a patch of vegetation, Water Resour Res, vol.47, p.3516, 2011.