M. Aeschlimann and L. Tettoni, Biophysical model of axonal pathfinding, Neurocomputing, vol.38, issue.40, pp.87-92, 2001.
DOI : 10.1016/S0925-2312(01)00539-2

L. Armijo-weingart and G. Gallo, It takes a village to raise a branch: Cellular mechanisms of the initiation of axon collateral branches, Molecular and Cellular Neuroscience, vol.84, 2017.
DOI : 10.1016/j.mcn.2017.03.007

G. A. Ascoli and J. L. Krichmar, L-neuron: A modeling tool for the efficient generation and parsimonious description of dendritic morphology, Neurocomputing, vol.32, issue.33, pp.1003-1011, 2000.
DOI : 10.1016/S0925-2312(00)00272-1

Y. Aso, K. Grübel, S. Busch, A. B. Friedrich, I. Siwanowicz et al., Characterized by GAL4 Drivers, Journal of Neurogenetics, vol.25, issue.16, pp.156-172, 2009.
DOI : 10.1523/JNEUROSCI.0149-05.2005
URL : http://www.tandfonline.com/doi/pdf/10.1080/01677060802471718?needAccess=true

Y. Aso, D. Hattori, Y. Yu, R. M. Johnston, N. A. Iyer et al., Author response, eLife, vol.130, 2014.
DOI : 10.7554/eLife.04577.047

C. C. Bell, V. Han, and N. B. Sawtell, Cerebellum-Like Structures and Their Implications for Cerebellar Function, Annual Review of Neuroscience, vol.31, issue.1, pp.1-24, 2008.
DOI : 10.1146/annurev.neuro.30.051606.094225

J. L. Bixby and W. A. Harris, Molecular Mechanisms of Axon Growth and Guidance, Annual Review of Cell Biology, vol.7, issue.1, pp.117-59, 1991.
DOI : 10.1146/annurev.cb.07.110191.001001

S. J. Caron, V. Ruta, L. Abbott, A. , and R. , Random convergence of olfactory inputs in the Drosophila mushroom body, Nature, vol.32, issue.7447, pp.497113-117, 2013.
DOI : 10.1002/(SICI)1097-4695(199705)32:5<443::AID-NEU1>3.0.CO;2-5
URL : http://europepmc.org/articles/pmc4148081?pdf=render

S. Cassenaer and G. Laurent, Hebbian STDP in mushroom bodies facilitates the synchronous flow of olfactory information in locusts, Nature, vol.24, issue.7154, pp.448709-713, 2007.
DOI : 10.1038/nature05973

H. Cuntz, F. Forstner, A. Borst, and M. Häusser, One Rule to Grow Them All: A General Theory of Neuronal Branching and Its Practical Application, PLoS Computational Biology, vol.24, issue.8, p.1000877, 2010.
DOI : 10.1371/journal.pcbi.1000877.s001

R. W. Davenport, E. Thies, and M. L. Cohen, Neuronal growth cone collapse triggers lateral extensions along trailing axons, Nat Neurosci Erratum in Nat Neurosci, vol.22, issue.35, pp.254-9485, 1999.
DOI : 10.1038/6360

B. M. Davis, E. Frank, F. A. Johnson, and S. A. Scott, Development of central projections of lumbosacral sensory neurons in the chick, The Journal of Comparative Neurology, vol.60, issue.4, pp.556-566, 1989.
DOI : 10.1113/jphysiol.1984.sp015291

, References

R. De-rooij, K. Miller, and E. Kuhl, Modeling molecular mechanisms in the axon, Computational Mechanics, vol.7, issue.2, pp.523-537, 2017.
DOI : 10.1371/journal.pone.0045661

G. P. Demyanenko and P. F. Maness, The L1 Cell Adhesion Molecule Is Essential for Topographic Mapping of Retinal Axons, The Journal of Neuroscience, vol.23, issue.2, pp.530-538, 2003.
DOI : 10.1523/JNEUROSCI.23-02-00530.2003

E. W. Dent, S. L. Gupton, and F. B. Gertler, The Growth Cone Cytoskeleton in Axon Outgrowth and Guidance, Cold Spring Harbor Perspectives in Biology, vol.3, issue.3, p.1800, 2011.
DOI : 10.1101/cshperspect.a001800

C. D. Deppmann, S. Mihalas, N. Sharma, B. E. Lonze, E. Niebur et al., A model for neuronal competition during development, Science, issue.5874, pp.320369-373, 2008.
DOI : 10.1016/j.ijdevneu.2008.09.036
URL : http://europepmc.org/articles/pmc3612357?pdf=render

B. J. Dickson, Molecular Mechanisms of Axon Guidance, Science, vol.298, issue.5600, pp.1959-1964, 2002.
DOI : 10.1126/science.1072165

J. P. Eberhard, A. Wanner, and G. Wittum, NeuGen: A tool for the generation of realistic morphology of cortical neurons and neural networks in 3D, Neurocomputing, vol.70, issue.1-3, pp.327-342, 2006.
DOI : 10.1016/j.neucom.2006.01.028

E. C. Engle, Human genetic disorders of axon guidance. Cold Spring Harbor perspectives in biology, p.1784, 2010.
DOI : 10.1101/cshperspect.a001784
URL : http://cshperspectives.cshlp.org/content/2/3/a001784.full.pdf

S. M. Farris, Are mushroom bodies cerebellum-like structures? Arthropod structure & development, pp.368-379, 2011.
DOI : 10.1016/j.asd.2011.02.004

L. A. Flanagan, Y. Ju, B. Marg, M. Osterfield, and P. A. Janmey, Neurite branching on deformable substrates, NeuroReport, vol.13, issue.18, p.132411, 2002.
DOI : 10.1097/00001756-200212200-00007
URL : http://europepmc.org/articles/pmc2408859?pdf=render

H. Francisco, B. B. Yellen, D. S. Halverson, G. Friedman, and G. Gallo, Regulation of axon guidance and extension by three-dimensional constraints, Biomaterials, vol.28, issue.23, pp.283398-407, 2007.
DOI : 10.1016/j.biomaterials.2007.04.015

K. Franze, The mechanical control of nervous system development, Development, vol.140, issue.15, pp.3069-3077, 2013.
DOI : 10.1242/dev.079145

P. Friedl, J. Locker, E. Sahai, and J. E. Segall, Classifying collective cancer cell invasion, Nature Cell Biology, vol.129, issue.8, p.14777, 2012.
DOI : 10.1002/ijc.26311

G. Gallo, The cytoskeletal and signaling mechanisms of axon collateral branching, Developmental Neurobiology, vol.9, issue.1, pp.201-220, 2011.
DOI : 10.1038/ncb1535
URL : http://onlinelibrary.wiley.com/doi/10.1002/dneu.20852/pdf

G. Gallo, The cytoskeletal and signaling mechanisms of axon collateral branching, Developmental Neurobiology, vol.9, issue.1, pp.201-221, 2011.
DOI : 10.1038/ncb1535
URL : http://onlinelibrary.wiley.com/doi/10.1002/dneu.20852/pdf

S. Ganguly, X. Liang, M. Grace, D. Lee, H. et al., Mathematical relationships between neuron morphology and neurite growth dynamics in drosophila melanogaster larva class iv sensory neurons, APS Meeting Abstracts, 2016.

A. S. Ghabrial and M. A. Krasnow, Social interactions among epithelial cells during tracheal branching morphogenesis, Nature, vol.16, issue.7094, p.441746, 2006.
DOI : 10.1016/j.cub.2005.11.072

D. A. Gibson and L. Ma, Developmental regulation of axon branching in the vertebrate nervous system, Development, vol.138, issue.2, pp.183-195, 2011.
DOI : 10.1242/dev.046441

, References 181

G. J. Goodhill, Contributions of Theoretical Modeling to the Understanding of Neural Map Development, Neuron, vol.56, issue.2, pp.301-311, 2007.
DOI : 10.1016/j.neuron.2007.09.027

G. J. Goodhill and L. J. Richards, Retinotectal maps: molecules, models and misplaced data, Trends in Neurosciences, vol.22, issue.12, pp.529-534, 1999.
DOI : 10.1016/S0166-2236(99)01469-1

B. P. Graham and A. Van-ooyen, Compartmental models of growing neurites, Neurocomputing, vol.38, issue.40, pp.31-36, 2001.
DOI : 10.1016/S0925-2312(01)00463-5

K. Guan and Y. Rao, Signalling mechanisms mediating neuronal responses to guidance cues, Nature Reviews Neuroscience, vol.4, issue.12, pp.941-956, 2003.
DOI : 10.1038/nrn1243

L. Guerra, L. M. Mcgarry, V. Robles, C. Bielza, P. Larrañaga et al., Comparison between supervised and unsupervised classifications of neuronal cell types: A case study, Developmental Neurobiology, vol.109, issue.1-2, pp.71-82, 2011.
DOI : 10.1007/978-1-4615-6616-8_7

A. Haeger, K. Wolf, M. M. Zegers, and P. Friedl, Collective cell migration: guidance principles and hierarchies, Trends in Cell Biology, vol.25, issue.9, pp.556-66, 2015.
DOI : 10.1016/j.tcb.2015.06.003

Y. Hakim, S. P. Yaniv, and O. Schuldiner, Astrocytes Play a Key Role in Drosophila Mushroom Body Axon Pruning, PLoS ONE, vol.1, issue.1, p.86178, 2014.
DOI : 10.1371/journal.pone.0086178.s003

E. Hannezo, C. L. Scheele, M. Moad, N. Drogo, R. Heer et al., A Unifying Theory of Branching Morphogenesis, Cell, vol.171, issue.1, pp.242-255, 2017.
DOI : 10.1016/j.cell.2017.08.026
URL : https://doi.org/10.1016/j.cell.2017.08.026

S. Hayashi, Y. Inoue, H. Kiyonari, T. Abe, K. Misaki et al., Protocadherin-17 mediates collective axon extension by recruiting actin regulator complexes to interaxonal contacts, Dev Cell, issue.6, pp.30673-87, 2014.
DOI : 10.1016/j.devcel.2014.07.015
URL : https://doi.org/10.1016/j.devcel.2014.07.015

M. Heisenberg, Mushroom body memoir: from maps to models, Nature Reviews Neuroscience, vol.18, issue.4, pp.266-275, 2003.
DOI : 10.1016/0166-2236(95)93905-D

T. A. Hely, B. Graham, V. Ooyen, and A. , A Computational Model of Dendrite Elongation and Branching Based on MAP2 Phosphorylation, Journal of Theoretical Biology, vol.210, issue.3, pp.375-384, 2001.
DOI : 10.1006/jtbi.2001.2314

T. Hige, What can tiny mushrooms in fruit flies tell us about learning and memory?, Neuroscience Research, vol.129, 2017.
DOI : 10.1016/j.neures.2017.05.002

W. Hong and L. Luo, Genetic Control of Wiring Specificity in the Fly Olfactory System, Genetics, vol.196, issue.1, pp.17-29, 2014.
DOI : 10.1534/genetics.113.154336

J. Y. Hua, M. C. Smear, H. Baier, and S. J. Smith, Regulation of axon growth in vivo by activity-base competition, Nature, issue.7036, p.4341022, 2005.

L. Jakobsson, C. A. Franco, K. Bentley, R. T. Collins, B. Ponsioen et al., Endothelial cells dynamically compete for the tip cell position during angiogenic sprouting, Nature Cell Biology, vol.174, issue.10, p.12943, 2010.
DOI : 10.1038/ncb2103

K. Kalil and E. W. Dent, Branch management: mechanisms of axon branching in the developing vertebrate CNS, Nature Reviews Neuroscience, vol.140, issue.1, p.7, 2014.
DOI : 10.1242/dev.091844

, References

K. Kalil, G. Szebenyi, and E. W. Dent, Common mechanisms underlying growth cone guidance and axon branching, Journal of Neurobiology, vol.17, issue.2, pp.145-158, 2000.
DOI : 10.1101/SQB.1990.055.01.045

P. C. Kerstein, R. H. Nichol, R. Nichol, I. Gomez, and T. M. , Mechanochemical regulation of growth cone motility, Frontiers in Cellular Neuroscience, vol.9, p.244, 2015.
DOI : 10.3389/fncel.2015.00244
URL : https://www.frontiersin.org/articles/10.3389/fncel.2015.00244/pdf

T. Kobayashi, K. Terajima, M. Nozumi, M. Igarashi, and K. Akazawa, A stochastic model of neuronal growth cone guidance regulated by multiple sensors, Journal of Theoretical Biology, vol.266, issue.4, pp.712-734, 2010.
DOI : 10.1016/j.jtbi.2010.07.036

R. A. Koene, B. Tijms, P. Van-hees, F. Postma, A. De-ridder et al., NETMORPH: A Framework for the Stochastic Generation of Large Scale Neuronal Networks With Realistic Neuron Morphologies, Neuroinformatics, vol.12, issue.4, pp.195-210, 2009.
DOI : 10.1007/BF02460884

A. L. Kolodkin and M. Tessier-lavigne, Mechanisms and Molecules of Neuronal Wiring: A Primer, Cold Spring Harbor Perspectives in Biology, vol.3, issue.6, p.1727, 2011.
DOI : 10.1101/cshperspect.a001727

J. Kong, D. R. Fish, R. L. Rockhill, M. , and R. H. , Diversity of ganglion cells in the mouse retina: Unsupervised morphological classification and its limits, The Journal of Comparative Neurology, vol.292, issue.3, pp.489293-310, 2005.
DOI : 10.1002/cne.20631

D. E. Koser, A. J. Thompson, S. K. Foster, A. Dwivedy, E. K. Pillai et al., Mechanosensing is critical for axon growth in the developing brain, Nature Neuroscience, vol.188, issue.12, pp.1592-1598, 2016.
DOI : 10.1083/jcb.200906043

T. Lee, A. Lee, and L. Luo, Development of the drosophila mushroom bodies: sequential generation of three distinct types of neurons from a neuroblast, Development, issue.18, pp.1264065-4076, 1999.

G. Leondaritis and B. J. Eickholt, Short Lives with Long-Lasting Effects: Filopodia Protrusions in Neuronal Branching Morphogenesis, PLOS Biology, vol.10, issue.9, p.1002241, 2015.
DOI : 10.1371/journal.pbio.1002241.g001

P. L. López-cruz, P. Larrañaga, J. Defelipe, and C. Bielza, Bayesian network modeling of the consensus between experts: An application to neuron classification, International Journal of Approximate Reasoning, vol.55, issue.1, pp.3-22, 2014.
DOI : 10.1016/j.ijar.2013.03.011

L. A. Lowery, V. Vactor, and D. , The trip of the tip: understanding the growth cone machinery. Nature reviews, Molecular cell biology, vol.10, issue.5, p.332, 2009.

A. Luczak, Spatial embedding of neuronal trees modeled by diffusive growth, Journal of Neuroscience Methods, vol.157, issue.1, pp.132-141, 2006.
DOI : 10.1016/j.jneumeth.2006.03.024

L. Luo, Actin cytoskeleton regulation in neuronal morphogenesis and structural plasticity. Annual review of cell and developmental biology, pp.601-635, 2002.

L. Luo and J. G. Flanagan, Development of Continuous and Discrete Neural Maps, Neuron, vol.56, issue.2, pp.284-300, 2007.
DOI : 10.1016/j.neuron.2007.10.014

D. R. Mclean, A. Van-ooyen, G. , and B. P. , Continuum model for tubulindriven neurite elongation, Neurocomputing, vol.58, pp.511-516, 2004.

, References 183

C. Medioni, F. Besse, X. Descombes, and G. Malandain, Motion compensation in two-photon microscopy temporal series, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), p.4, 2015.
DOI : 10.1109/ISBI.2015.7164182
URL : https://hal.archives-ouvertes.fr/hal-01311755

C. Medioni, A. Ephrussi, and F. Besse, Live imaging of axonal transport in Drosophila pupal brain explants, Nature Protocols, vol.34, issue.4, pp.574-84, 2015.
DOI : 10.1002/gene.10144
URL : https://hal.archives-ouvertes.fr/hal-01254070

C. Medioni, M. Ramialison, A. Ephrussi, and F. Besse, Imp Promotes Axonal Remodeling by Regulating profilin mRNA during Brain Development, Current Biology, vol.24, issue.7, pp.24793-800, 2014.
DOI : 10.1016/j.cub.2014.02.038
URL : https://hal.archives-ouvertes.fr/hal-00968743

E. Mehes and T. Vicsek, Collective motion of cells: from experiments to models, Integr. Biol., vol.84, issue.9, pp.831-54, 2014.
DOI : 10.1103/PhysRevE.84.031927

T. Mitchison and M. Kirschner, Cytoskeletal dynamics and nerve growth, Neuron, vol.1, issue.9, pp.761-772, 1988.
DOI : 10.1016/0896-6273(88)90124-9

D. Mortimer, J. Feldner, T. Vaughan, I. Vetter, Z. Pujic et al., A Bayesian model predicts the response of axons to molecular gradients, Proceedings of the National Academy of Sciences, pp.10296-10301, 2009.
DOI : 10.1016/S0074-7696(07)63001-0

D. Mortimer, T. Fothergill, Z. Pujic, L. J. Richards, and G. J. Goodhill, Growth cone chemotaxis, Trends in Neurosciences, vol.31, issue.2, pp.3190-3198, 2008.
DOI : 10.1016/j.tins.2007.11.008

A. Mottini, X. Descombes, and F. Besse, Tree-like Shapes Distance Using the Elastic Shape Analysis Framework, Procedings of the British Machine Vision Conference 2013, 2013.
DOI : 10.5244/C.27.69
URL : https://hal.archives-ouvertes.fr/hal-00875475

A. Mottini, X. Descombes, and F. Besse, From Curves to Trees: A Tree-like Shapes Distance Using the Elastic Shape Analysis Framework, Neuroinformatics, vol.18, issue.2, pp.175-191, 2015.
DOI : 10.1137/0218082
URL : https://hal.archives-ouvertes.fr/hal-01086777

M. Murthy, I. Fiete, L. , and G. , Testing Odor Response Stereotypy in the Drosophila Mushroom Body, Neuron, vol.59, issue.6, pp.1009-1023, 2008.
DOI : 10.1016/j.neuron.2008.07.040

D. R. Myatt, T. Hadlington, G. A. Ascoli, and S. J. Nasuto, Neuromantic ??? from Semi-Manual to Semi-Automatic Reconstruction of Neuron Morphology, Frontiers in Neuroinformatics, vol.6, p.4, 2012.
DOI : 10.3389/fninf.2012.00004

H. Nguyen, P. Dayan, Z. Pujic, J. Cooper-white, and G. J. Goodhill, A mathematical model explains saturating axon guidance responses to molecular gradients, Elife, vol.5, 2016.

M. Pawlik and N. Augsten, RTED, Proceedings of the VLDB Endowment, pp.334-345, 2011.
DOI : 10.14778/2095686.2095692

M. Petrovic and D. Schmucker, Axonal wiring in neural development: Target-independent mechanisms help to establish precision and complexity, BioEssays, vol.162, issue.9, pp.996-1004, 2015.
DOI : 10.1016/j.cell.2015.05.055

C. Plachez and L. J. Richards, Mechanisms of Axon Guidance in the Developing Nervous System, Current topics in developmental biology, vol.69, pp.267-346, 2005.
DOI : 10.1016/S0070-2153(05)69010-2

R. Rabinovich, D. Yaniv, S. P. Alyagor, I. Schuldiner, and O. , Nitric Oxide as a Switching Mechanism between Axon Degeneration and Regrowth during Developmental Remodeling, Cell, vol.164, issue.1-2, pp.170-182, 2016.
DOI : 10.1016/j.cell.2015.11.047
URL : https://doi.org/10.1016/j.cell.2015.11.047

A. Razetti, X. Descombes, C. Medioni, and F. Besse, Statistical Characterization, Modelling and Classification of Morphological Changes in imp Mutant Drosophila Gamma Neurons, Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies, 2016.
DOI : 10.5220/0005703800630074
URL : https://hal.archives-ouvertes.fr/hal-01290499

A. Razetti, X. Descombes, C. Medioni, and F. Besse, A Stochastic Framework for Neuronal Morphological Comparison: Application to the Study of imp Knockdown Effects in Drosophila Gamma Neurons, pp.145-166, 2017.
DOI : 10.5244/C.27.69
URL : https://hal.archives-ouvertes.fr/hal-01502735

P. Rørth, Fellow travellers: emergent properties of collective cell migration, EMBO reports, vol.67, issue.11, pp.984-991, 2012.
DOI : 10.1006/cbir.1996.0018

A. Sagasti, M. R. Guido, D. W. Raible, and A. F. Schier, Repulsive Interactions Shape the Morphologies and Functional Arrangement of Zebrafish Peripheral Sensory Arbors, Current Biology, vol.15, issue.9, pp.804-814, 2005.
DOI : 10.1016/j.cub.2005.03.048
URL : https://doi.org/10.1016/j.cub.2005.03.048

J. Schindelin, I. Arganda-carreras, E. Frise, V. Kaynig, M. Longair et al., Fiji: an open-source platform for biological-image analysis, Nature Methods, vol.27, issue.7, pp.676-682, 2012.
DOI : 10.1093/bioinformatics/btr390
URL : http://europepmc.org/articles/pmc3855844?pdf=render

K. Schlüter, B. M. Jockusch, and M. Rothkegel, Profilins as regulators of actin dynamics, Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, vol.1359, issue.2, pp.97-109, 1997.
DOI : 10.1016/S0167-4889(97)00100-6

H. Schmidt and F. G. Rathjen, Signalling mechanisms regulating axonal branching in vivo, BioEssays, vol.4, issue.11, pp.977-985, 2010.
DOI : 10.1007/BF00185878

H. Schmidt, A. Stonkute, R. Jüttner, S. Schäffer, J. Buttgereit et al., The receptor guanylyl cyclase Npr2 is essential for sensory axon bifurcation within the spinal cord, The Journal of Cell Biology, vol.21, issue.2, pp.331-340, 2007.
DOI : 10.1016/j.neuron.2006.10.032
URL : http://jcb.rupress.org/content/jcb/179/2/331.full.pdf

L. J. Schumacher, P. M. Kulesa, R. Mclennan, R. E. Baker, and P. K. Maini, Multidisciplinary approaches to understanding collective cell migration in developmental biology, Open Biology, vol.91, issue.6, 2016.
DOI : 10.1016/j.ydbio.2004.03.015
URL : http://rsob.royalsocietypublishing.org/content/royopenbio/6/6/160056.full.pdf

R. Segev and E. Ben-jacob, Generic modeling of chemotactic based self-wiring of neural networks, Neural Networks, vol.13, issue.2, pp.185-199, 2000.
DOI : 10.1016/S0893-6080(99)00084-2
URL : http://arxiv.org/pdf/cond-mat/9807089v1.pdf

H. D. Simpson, D. Mortimer, and G. J. Goodhill, Theoretical models of neural circuit development, Current topics in developmental biology, vol.87, pp.1-51, 2009.
DOI : 10.1016/s0070-2153(09)01201-0

H. Song and M. Poo, The cell biology of neuronal navigation, Nature Cell Biology, vol.18, issue.3, pp.81-88, 2001.
DOI : 10.1093/emboj/18.3.501

A. Srivastava, S. H. Joshi, W. Mio, and X. Liu, Statistical shape analysis: clustering, learning, and testing, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.27, issue.4, pp.590-602, 2005.
DOI : 10.1109/TPAMI.2005.86
URL : http://calais.stat.fsu.edu/anuj/PDF-files/Papers/SrivastavaShapeAnalysis.pdf

, References 185

Y. Suleymanov, F. Gafarov, and N. Khusnutdinov, Modeling of interstitial branching of axonal networks, Journal of Integrative Neuroscience, vol.21, issue.01, pp.103-119, 2013.
DOI : 10.1146/annurev.neuro.28.061604.135637

G. Szebenyi, J. L. Callaway, E. W. Dent, K. , and K. , Interstitial Branches Develop from Active Regions of the Axon Demarcated by the Primary Growth Cone during Pausing Behaviors, The Journal of Neuroscience, vol.18, issue.19, pp.187930-187970, 1998.
DOI : 10.1523/JNEUROSCI.18-19-07930.1998

C. R. Tessier and K. Broadie, Drosophila fragile X mental retardation protein developmentally regulates activity-dependent axon pruning, Development, vol.135, issue.8, pp.1351547-1557, 2008.
DOI : 10.1242/dev.015867
URL : http://dev.biologists.org/content/135/8/1547.full.pdf

M. Tessier-lavigne and C. S. Goodman, The Molecular Biology of Axon Guidance, Science, vol.274, issue.5290, pp.2741123-1133, 1996.
DOI : 10.1126/science.274.5290.1123

E. Theveneau and R. Mayor, Neural crest migration: interplay between chemorepellents, chemoattractants, contact inhibition, epithelial-mesenchymal transition, and collective cell migration, Wiley Interdisciplinary Reviews: Developmental Biology, vol.272, issue.3, pp.435-480, 2012.
DOI : 10.1111/j.1742-4658.2005.04624.x

B. Torben-nielsen, D. Schutter, and E. , Context-aware modeling of neuronal morphologies, Frontiers in Neuroanatomy, vol.9, issue.e1003173, p.92, 2014.
DOI : 10.1371/journal.pcbi.1003173

J. W. Triplett, C. Pfeiffenberger, J. Yamada, B. K. Stafford, N. T. Sweeney et al., Competition is a driving force in topographic mapping, Proceedings of the National Academy of Sciences, pp.19060-19065, 2011.
DOI : 10.1038/nn1508
URL : http://www.pnas.org/content/108/47/19060.full.pdf

D. Tsigankov and A. Koulakov, Optimal axonal and dendritic branching strategies during the development of neural circuitry, Frontiers in Neural Circuits, vol.3, 2009.
DOI : 10.3389/neuro.04.018.2009

A. Van-ooyen, Using theoretical models to analyse neural development, Nature Reviews Neuroscience, vol.102, issue.6, p.311, 2011.
DOI : 10.1016/S0165-3806(97)00100-4

A. Van-ooyen and R. R. Ribchester, Competition in the development of nerve connections, Modelling Neural Development, pp.183-211, 2003.

J. Van-pelt and A. Schierwagen, Morphological analysis and modeling of neuronal dendrites, Mathematical Biosciences, vol.188, issue.1-2, pp.147-155, 2004.
DOI : 10.1016/j.mbs.2003.08.006

L. Vanherpe, L. Kanari, G. Atenekeng, J. Palacios, and J. Shillcock, Framework for efficient synthesis of spatially embedded morphologies, Physical Review E, vol.94, issue.2, p.23315, 2016.
DOI : 10.1038/nature05453

S. R. Vedula, S. Vedula, A. Ravasio, C. T. Lim, and B. Ladoux, Collective Cell Migration: A Mechanistic Perspective, Physiology, vol.65, issue.6, pp.28370-28379, 2013.
DOI : 10.1002/cyto.a.21029
URL : https://hal.archives-ouvertes.fr/hal-00916552

E. M. Verheyen and L. Cooley, Profilin mutations disrupt multiple actin-dependent processes during drosophila development, Development, vol.120, issue.4, pp.717-728, 1994.

L. Wang and T. Marquardt, What axons tell each other: axon???axon signaling in nerve and circuit assembly, Current Opinion in Neurobiology, vol.23, issue.6, pp.974-982, 2013.
DOI : 10.1016/j.conb.2013.08.004
URL : https://doi.org/10.1016/j.conb.2013.08.004

R. J. Watts, E. D. Hoopfer, and L. Luo, Axon Pruning during Drosophila Metamorphosis, Neuron, vol.38, issue.6, pp.38871-885, 2003.
DOI : 10.1016/S0896-6273(03)00295-2
URL : https://doi.org/10.1016/s0896-6273(03)00295-2

R. Watts, R. J. Schuldiner, O. Perrino, J. Larsen, C. Luo et al., Glia Engulf Degenerating Axons during Developmental Axon Pruning, Current Biology, vol.14, issue.8, pp.14678-84, 2004.
DOI : 10.1016/j.cub.2004.03.035
URL : https://doi.org/10.1016/j.cub.2004.03.035

C. J. Weijer, Collective cell migration in development, Journal of Cell Science, vol.122, issue.18, pp.3215-3223, 2009.
DOI : 10.1242/jcs.036517

M. L. Woods, C. Carmona-fontaine, C. P. Barnes, I. D. Couzin, R. Mayor et al., Directional Collective Cell Migration Emerges as a Property of Cell Interactions, PLoS ONE, vol.22, issue.9, p.104969, 2014.
DOI : 10.1371/journal.pone.0104969.s012

J. S. Wu and L. Luo, A protocol for mosaic analysis with a repressible cell marker (MARCM) in Drosophila, Nature Protocols, vol.405, issue.6, pp.2583-2592, 2006.
DOI : 10.1038/nprot.2006.320

S. P. Yaniv, N. Issman-zecharya, M. Oren-suissa, B. Podbilewicz, and O. Schuldiner, Axon Regrowth during Development and Regeneration Following Injury Share Molecular Mechanisms, Current Biology, vol.22, issue.19, pp.221774-1782, 2012.
DOI : 10.1016/j.cub.2012.07.044
URL : https://doi.org/10.1016/j.cub.2012.07.044

S. P. Yaniv and O. Schuldiner, A fly's view of neuronal remodeling, Wiley Interdisciplinary Reviews: Developmental Biology, vol.338, issue.Pt 11, pp.618-635, 2016.
DOI : 10.1126/science.1228258

F. Zubler and R. Douglas, A framework for modeling the growth and development of neurons and networks, Frontiers in Computational Neuroscience, vol.3, 2009.
DOI : 10.3389/neuro.10.025.2009

F. Zubler, A. Hauri, S. Pfister, R. Bauer, J. C. Anderson et al., Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects, PLoS Computational Biology, vol.609, issue.40, p.1003173, 2013.
DOI : 10.1371/journal.pcbi.1003173.s001
URL : https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003173&type=printable