, Distinct Cellular and Organismic Responses to Salt Stress. Plant and Cell Physiology, vol.33, pp.1215-1223, 1992.
, Growth and primary production of Cymodocea nodosa in a coastal lagoon, Aquatic Botany, vol.76, issue.3, pp.185-193, 2003.
DOI : 10.1016/S0304-3770(03)00049-4
, Evaluation des apports en azote et phosphore des bassins versants (données statistiques et bibliographiques) Application aux étangs du département de l'Hérault, p.35, 1991.
, Limnology and Oceanography, vol.53, issue.5, pp.1477-1483, 2015.
DOI : 10.4319/lo.2008.53.2.0542
, Hydrologie des écosystèmes marins, 2004.
, Dosage automatique des nutriments dans les eaux marines: méthodes en flux continu, 2007.
, The effect of localised eutrophication on competition between Ulva lactuca (Ulvaceae, Chlorophyta) and a commercial resource of Gracilaria verrucosa, 1996.
, Hydrobiologia, vol.326327, pp.291-296
,
, Coastal Lagoons and Climate Change: Ecological and Social Ramifications in U.S. Atlantic and Gulf Coast Ecosystems, p.8, 2009.
,
, Factors involved in spatiotemporal dynamics of submerged macrophytes in a Portuguese coastal lagoon under Mediterranean climate, Estuarine, Coastal and Shelf Science, vol.110, pp.93-100, 2012.
, Metabolic Imbalance in Coastal Vegetated (Posidonia oceanica) and Unvegetated Benthic Ecosystems, Ecosystems, vol.188, issue.3, pp.459-471, 2010.
DOI : 10.1007/978-1-4612-1224-9_7
, C:N:P ratios of benthic marine plants1, Limnology and Oceanography, vol.28, issue.3, pp.568-574, 1983.
DOI : 10.4319/lo.1983.28.3.0568
,
, Effect of macrophyte community composition and nutrient enrichment on plant biomass and algal blooms, Basic and Applied Ecology, vol.11, pp.432-439, 2010.
, The value of estuarine and coastal ecosystem services, Ecological Monographs, vol.81, issue.2, pp.169-193, 2011.
DOI : 10.1890/ES10-00101.1
, Coastal Lagoons; the natural history of a neglected habitat, 1980.
, Vers une gestion intégrée des lagunes méditerranéennes, p.73, 2007.
, Distribution of picophytoplankton and nanophytoplankton along an anthropogenic eutrophication gradient in French Mediterranean coastal lagoons, Aquatic Microbial Ecology, vol.63, issue.1, pp.29-45, 2011.
DOI : 10.3354/ame01480
URL : http://www.int-res.com/articles/ame2011/63/a063p029.pdf
,
, The Identification, Conservation, and Management of Estuarine and Marine Nurseries for Fish and Invertebrates: A better understanding of the habitats that serve as nurseries for marine species and the factors that create sitespecific variability in nursery quality will improve conservation and management of these areas, BioScience, vol.51, pp.633-641, 2001.
, L'Observatoire du littoral : démographie et économie du littoral, p.5250, 2009.
, Dynamics and stability of Chara sp. and Potamogeton pectinatus in a shallow lake changing in eutrophication level, Hydrobiologia, vol.408409, pp.335-342, 1999.
, LARVAHS: Predicting clam larval dispersal and recruitment using habitat suitability-based particle tracking model, Ecological Modelling, vol.268, pp.78-92, 2013.
DOI : 10.1016/j.ecolmodel.2013.07.020
, NITROGEN ALLOCATION AND STORAGE PATTERNS IN GRACILARIA TIKVAHIAE (RHODOPHYTA), Journal of Phycology, vol.60, issue.3, pp.344-348, 1982.
DOI : 10.1111/j.1529-8817.1980.tb03076.x
, Decline of charophytes during eutrophication: comparison with angiosperms, Freshwater Biology, vol.102, issue.1, pp.9-14, 1992.
DOI : 10.1007/BF02257054
, Partialling out the Spatial Component of Ecological Variation, Ecology, vol.73, issue.3, pp.1045-1055, 1992.
DOI : 10.2307/1940179
, Salinity Tolerance and Competition Drive Distributions of Native and Invasive Submerged Aquatic Vegetation in the Upper San Francisco Estuary, Estuaries and Coasts, vol.29, issue.3, pp.707-717, 2016.
DOI : 10.1007/BF02784989
, Medium- and Long-term Recovery of Estuarine and Coastal Ecosystems: Patterns, Rates and Restoration Effectiveness, Estuaries and Coasts, vol.52, issue.3, pp.1249-1260, 2010.
DOI : 10.1016/S0422-9894(04)80050-3
, Is Total Primary Production in Shallow Coastal Marine Waters Stimulated by Nitrogen Loading?, Oikos, vol.76, issue.2, pp.406-410, 1996.
DOI : 10.2307/3546213
, Les conditions de r??f??rence de la directive cadre europ??enne sur l???eau face ?? la dynamique des hydrosyst??mes et des usages, Natures Sciences Soci??t??s, vol.3, issue.361, pp.3-14, 2014.
DOI : 10.2307/1930070
, A Comparative Analysis of Eutrophication Patterns in a Temperate Coastal Lagoon, Estuaries, vol.19, issue.2, pp.408-421, 1996.
DOI : 10.2307/1352459
, Adaptation to Fluctuations rather than to Extremes of Environmental Parameters, Limnology in Australia, pp.131-140, 1986.
DOI : 10.1007/978-94-009-4820-4_6
, DON as a source of bioavailable nitrogen for phytoplankton, Biogeosciences, vol.4, issue.3, pp.283-296, 2007.
DOI : 10.5194/bg-4-283-2007
URL : https://hal.archives-ouvertes.fr/hal-00297614
, Modeling the atmospheric deposition and stormwater washoff of nitrogen compounds, Environmental Modelling & Software, vol.16, issue.5, pp.467-479, 2001.
DOI : 10.1016/S1364-8152(01)00027-5
, Seagrasses and eutrophication, Journal of Experimental Marine Biology and Ecology, vol.350, issue.1-2, pp.46-72, 2007.
DOI : 10.1016/j.jembe.2007.06.024
, A dendrite method for cluster analysis, Communications in Statistics, vol.3, pp.1-27, 1974.
,
, Implications of nutrient decline in the seagrass ecosystem success, Marine Pollution Bulletin, vol.60, pp.601-608, 2010.
, Phosphorus Sources for Aquatic Weeds: Water or Sediments?, Science, vol.207, issue.4434, pp.987-989, 1980.
DOI : 10.1126/science.207.4434.987
, Food web structure of two Mediterranean lagoons under varying degree of eutrophication, Journal of Sea Research, vol.60, issue.4, pp.264-275, 2008.
DOI : 10.1016/j.seares.2008.10.006
URL : https://hal.archives-ouvertes.fr/hal-00485298
, From Metaphor to Measurement: Resilience of What to What?, Ecosystems, vol.4, issue.8, pp.765-781, 2001.
DOI : 10.1007/s10021-001-0045-9
, Stability and bistability of seagrass ecosystems in shallow coastal lagoons: Role of feedbacks with sediment resuspension and light attenuation, Journal of Geophysical Research, vol.51, issue.1???2, p.3011, 2010.
DOI : 10.1007/BF02782971
, Water clarity and eelgrass responses to nitrogen reductions in the eutrophic Skive Fjord, Denmark, Hydrobiologia, vol.13, issue.1, pp.293-309, 2013.
DOI : 10.1039/c1em10139k
, Biomass of Ruppia cirrhosa and Potamogeton pectinatus in a Mediterranean brackish lagoon, Lake Ichkeul, Tunisia. Fundamental and Applied Limnology, pp.243-255, 2007.
DOI : 10.1127/1863-9135/2007/0168-0243
URL : https://hal.archives-ouvertes.fr/hal-00727037
, Eutrophication gradients in coastal lagoons as exemplified by the Bassin d'Arcachon and the Étang du Prévost, Hydrobiologia, vol.329, p.ix?xxviii, 1996.
DOI : 10.1007/bf00034542
, ): Nitrogen and Sulfur Cycles and Population Dynamics in Coastal Lagoons A Research Programme of the Environment Programme of the EC (DG XII), Coastal Lagoon Eutrophication and ANaerobic Processes, 2012.
, Variability and control of carbon consumption, export, and accumulation in marine communities, Limnology and Oceanography, vol.47, issue.1, pp.11-22, 2002.
DOI : 10.4319/lo.2002.47.1.0011
URL : http://onlinelibrary.wiley.com/doi/10.4319/lo.2002.47.1.0011/pdf
, Eutrophication-Driven Shifts in Primary Producers in Shallow Coastal Systems: Implications for System Functional Change, Estuaries and Coasts, vol.33, issue.421, pp.180-197, 2014.
DOI : 10.1007/s12237-009-9213-5
, Guide méthodologique de gestion des lagunes méditerranéennes, CELRL, issue.1, 2000.
, Région Languedoc-Roussillon
, , 2006.
, Etude réalisée dans le cadre du 8ème programme de l'Agence de l'Eau Rhône- Méditerranée et Corse, p.125
, Mod??lisation num??rique des crises anoxiques (mala??gues) dans la lagune de Thau (France), Oceanologica Acta, vol.24, pp.87-97, 2001.
DOI : 10.1016/S0399-1784(00)01109-9
, The Management of Eutrophicated Waters Marine Benthic Vegetation, pp.45-78978, 1007.
, Spatio-temporal dynamics of a Zostera noltii dominated community over a period of fluctuating salinity in a shallow lagoon, Southern France, Estuarine, Coastal and Shelf Science, vol.64, issue.2-3, pp.307-315, 2005.
DOI : 10.1016/j.ecss.2005.02.024
, The comparative estimation of phytoplanktonic, microphytobenthic and macrophytobentic primary production in the oceans, Marine Microbial Food Webs, vol.4, pp.31-57, 1990.
, Comparative dynamics of pelagic and benthic micro-algae in a coastal ecosystem, Estuarine, Coastal and Shelf Science, vol.133, pp.67-77, 2013.
DOI : 10.1016/j.ecss.2013.08.015
URL : https://hal.archives-ouvertes.fr/hal-00944763
, The interactive effects of the antifouling herbicides Irgarol 1051 and Diuron on the seagrass Zostera marina (L.), 2004.
, Aquatic Toxicology, vol.66, pp.293-305
, Spatial and temporal vairations of aquatic macrophytes and water quality in six coastal lagoons of western Greece, Belgian Journal of Botany, vol.140, pp.39-50, 2007.
, Macrophytes as habitat for fauna, Marine Ecology Progress Series, vol.396, pp.221-234, 2009.
DOI : 10.3354/meps08351
, Our evolving conceptual model of the coastal eutrophication problem, Marine Ecology Progress Series, vol.210, pp.223-253, 2001.
DOI : 10.3354/meps210223
, Ecology of charophytes: an introduction, Aquatic Botany, vol.72, issue.3-4, pp.205-208, 2002.
DOI : 10.1016/S0304-3770(01)00200-5
, The value of the world's ecosystem services and natural capital, Nature, vol.387, issue.6630, pp.253-260, 1997.
DOI : 10.1038/387253a0
, Barrier coast distribution: a world-wide survey. Second National Coastal Shallow Water research Conference, p.50, 1971.
, Diel Oxygen Dynamics and Anoxic Events in an Eutrophic Estuary of Waquoit Bay, Massachusetts, Estuaries, vol.17, issue.1, pp.131-139, 1994.
DOI : 10.2307/1352562
, Coastal Eutrophication and Marine Benthic Vegetation: A Model Analysis Marine Benthic Vegetation, p.123, 1996.
, Chapitre2. Biodiversity of coastal lagoon ecosystems and their vulnerability to global change Ecosystems Biodiversity, pp.29-40, 2011.
, Restoration ecology of coastal lagoons: new methods for the prediction of ecological trajectories and economic valuation Aquatic Conservation: Marine and Freshwater Ecosystems, pp.137-157, 2017.
, , 2005.
, Effects of light on seagrass photosynthesis, growth and depth distribution, Aquatic Botany, vol.27, issue.1, pp.15-26, 1987.
DOI : 10.1016/0304-3770(87)90083-0
, , 2013.
, Analyse statistique des données du RSL -Etude des trajectoires écologiques des lagunes entre, 2001.
, http://www.wri.org/resource/world-hypoxic-and- eutrophic-coastal-areas, 2010.
, , 1996.
, , pp.251-264
, Anthropogenic and natural disturbance effects on a macrobenthic estuarine community over a 10-year period, Marine Pollution Bulletin, vol.54, issue.5, pp.576-585, 2007.
DOI : 10.1016/j.marpolbul.2006.12.005
, Co-inertia analysis: an alternative method for studying species-environment relationships, Freshwater Biology, vol.31, issue.3, pp.277-294, 1994.
DOI : 10.1016/0269-7491(87)90079-0
, The ade4 Package: Implementing the Duality Diagram for Ecologists, Journal of Statistical Software, vol.22, 2007.
DOI : 10.18637/jss.v022.i04
URL : https://hal.archives-ouvertes.fr/hal-00434575
, Seagrass depth limits, Aquatic Botany, vol.40, issue.4, pp.363-377, 1991.
DOI : 10.1016/0304-3770(91)90081-F
, Nutrient concentration of aquatic plants: Patterns across species, Limnology and Oceanography, vol.37, issue.4, pp.882-889, 1992.
DOI : 10.4319/lo.1992.37.4.0882
URL : http://onlinelibrary.wiley.com/doi/10.4319/lo.1992.37.4.0882/pdf
, Submerged aquatic vegetation in relation to different nutrient regimes, Ophelia, vol.74, issue.1, pp.87-112, 1995.
DOI : 10.2307/1940815
, The future of seagrass meadows, Environmental Conservation, vol.29, issue.02, pp.192-206, 2002.
DOI : 10.1017/S0376892902000127
URL : https://digital.csic.es/bitstream/10261/89840/1/Duarte-Environmental-Conservation-2002-v29-n2-p192.pdf
, Paradigms in the Recovery of Estuarine and Coastal Ecosystems. Estuaries and Coasts, pp.1202-1212, 2015.
, The fate of marine autotrophic production, Limnology and Oceanography, vol.41, issue.8, pp.1758-1766, 1996.
DOI : 10.4319/lo.1996.41.8.1758
, Return to Neverland: Shifting Baselines Affect Eutrophication Restoration Targets, Estuaries and Coasts, vol.314, issue.1, pp.29-36, 2009.
DOI : 10.1007/BF02784989
, Macroflore benthique, pp.115-118, 1991.
, From the myth of a lost paradise to targeted river restoration: forget natural references and focus on human benefits, River Research and Applications, vol.41, issue.10, pp.568-581, 2009.
DOI : 10.1111/j.1936-704X.2006.mp134001002.x
URL : https://hal.archives-ouvertes.fr/halshs-00418318
, , 2009.
, Common implementation strategy for the water framework directive Guidance N°24. River basin management in a changing climate, EC, vol.60, 2000.
, Intertidal Deposits: River Mouths, Tidal Flats, and Coastal Lagoons, 1998.
, Estuarine, coastal and marine ecosystem restoration: Confusing management and science ??? A revision of concepts, Estuarine, Coastal and Shelf Science, vol.74, issue.3, pp.349-366, 2007.
DOI : 10.1016/j.ecss.2007.05.034
, Patterns in decomposition rates among photosynthetic organisms: the importance of detritus C:N:P content, Oecologia, vol.74, issue.4, pp.457-471, 1993.
DOI : 10.1007/BF00021043
, establishing a framework community actions in the field of water policy, European Commission (EC)EC of the European Parliament, pp.1-7312, 2000.
, Comparison of carbon production and decomposition, benthic nutrient fluxes and denitrification in seagrass, phytoplankton, benthic microalgae- and macroalgae-dominated warm-temperate Australian lagoons, Marine Ecology Progress Series, vol.229, pp.43-59, 2002.
DOI : 10.3354/meps229043
, ) habitats, Limnology and Oceanography, vol.56, issue.5, pp.1737-1750, 2011.
DOI : 10.4319/lo.2011.56.5.1737
, The contribution of denitrification and burial to the nitrogen budgets of three geomorphically distinct Australian estuaries: Importance of seagrass habitats, Limnology and Oceanography, vol.90, issue.3, pp.1144-1156, 2016.
DOI : 10.3354/meps090157
, Natural Recovery and Planned Intervention in Coastal Wetlands: Venice Lagoon (Northern Adriatic Sea, Italy) as a Case Study, The Scientific World Journal, vol.5, issue.1, 2014.
DOI : 10.1016/j.csr.2011.08.005
URL : http://doi.org/10.1155/2014/968618
, Phytoplankton community composition and distribution in a eutrophic coastal area (Venice lagoon, Italy), Acta Adriatica : international journal of Marine Sciences, vol.45, pp.163-180, 2004.
, Spatial patterns in coastal lagoons related to the hydrodynamics of seawater intrusion, Marine Pollution Bulletin, vol.119, issue.1, pp.132-144, 2017.
DOI : 10.1016/j.marpolbul.2017.03.006
, Nutrient cycling and plant dynamics in estuaries: A brief review, Acta Oecologica, vol.20, issue.4, pp.237-248, 1999.
DOI : 10.1016/S1146-609X(99)00142-3
URL : http://estudogeral.sib.uc.pt/jspui/bitstream/10316/13094/1/Nutrient%20cycling%20and%20plant%20dynamics%20in%20estuaries%3a%20A%20brief%20review.pdf
, Effects of current on photosynthesis and distribution of seagrasses, Aquatic Botany, vol.27, issue.1, pp.59-78, 1987.
DOI : 10.1016/0304-3770(87)90086-6
, Use of shallow water habitats by fish assemblages in a Mediterranean coastal lagoon, 2006.
, Estuarine, Coastal and Shelf Science, vol.66, pp.67-83
,
, Biomonitoring of human impacts in freshwater ecosystems: the good, the bad and the ugly, Advances in Ecological Research, vol.44, pp.1-68, 2011.
, The role of nitrogen status in regulating transient ammonium uptake and nitrogen storage by macroalgae, Journal of Experimental Marine Biology and Ecology, vol.92, issue.2-3, pp.283-301, 1985.
DOI : 10.1016/0022-0981(85)90100-5
, The Stability of Vegetated Tidal Flats in a Coastal Lagoon through Quasi In-Situ Measurements of Sediment Erodibility, Journal of Coastal Research, pp.1500-1504, 2011.
, Photosynthetic response of P-deficient Gracilaria tenuistipitata under two different phosphate treatments, Physiologia Plantarum, vol.80, issue.4, pp.601-606, 1996.
DOI : 10.1007/BF02180189
, Light availability in the coastal ocean: impact on the distribution of benthic photosynthetic organisms and contribution to primary production, Biogeosciences Discussions, vol.3, issue.4, pp.895-959, 2006.
DOI : 10.5194/bgd-3-895-2006-supplement
URL : https://hal.archives-ouvertes.fr/hal-00330315
, Seacarb: seawater carbonate chemistry with R. R package version 3.1. , https, 2016.
, Macrophytobenthos de substrat meuble de l'étang de Thau (France, Méditerranée) et facteurs environnementaux associés, Oceanologica Acta, vol.18, pp.557-571, 1995.
, Connaissance des lagunes. Bilan et stratégie dans le cadre de la mise en oeuvre du SDAGE, pp.2016-2021, 2016.
, , 2014.
, Coastal Lagoon: a Tipping Point, Ecosystem Changes, and Potential Causes, Estuaries and Coasts, vol.37, pp.128-146
, Journal of Phycology, vol.86, issue.5, pp.1146-1153, 2008.
DOI : 10.2216/i0031-8884-18-1-83.1
, Organic contaminant loads into the Western Mediterranean Sea: Estimate of Ebro River inputs, Chemosphere, vol.65, issue.2, pp.224-236, 2006.
DOI : 10.1016/j.chemosphere.2006.02.058
, Site scores and conditional biplots in canonical correspondence analysis, Environmetrics, vol.15, issue.1, pp.67-80, 2004.
DOI : 10.1002/env.629
, World Atlas of Seagrasses. UNEP-WCMC, 2003.
, A Multiscale Approach to Seagrass Recovery in Tampa Bay, Florida, Ecological Restoration, vol.29, issue.1-2, pp.82-93, 2011.
DOI : 10.3368/er.29.1-2.82
, Which factors regulate seagrass growth and distribution? European seagrasses: an introduction to monitoring and management, 2004.
, , pp.67-76, 1984.
, Paralic ecosystems. Biological organization and functionning, Vie Milieu, vol.42, pp.215-251, 1992.
, AlgaeBase. World-wide electronic publication, 2016.
, Not all plants are the same: Exploring metabolism and nitrogen fluxes in a benthic community composed of different aquatic plant species, Limnology and Oceanography, vol.53, issue.5, pp.1787-1799, 2016.
DOI : 10.4319/lo.2008.53.2.0542
, Photoecophysiology of Marine Macroalgae, Photochemistry and Photobiology, vol.46, issue.1, pp.1-14, 1997.
DOI : 10.1007/BF01313484
, Effect of the seagrass Zostera capricorni on sediment microbial processes, Marine Ecology Progress Series, vol.199, pp.83-96, 2000.
DOI : 10.3354/meps199083
, Changes in major plant groups following nutrient enrichment Eutrophic shallow estuaries and lagoons, pp.173-187, 1995.
, The Impact of the Herbicide Diuron on Photosynthesis in Three Species of Tropical Seagrass, Marine Pollution Bulletin, vol.41, issue.7-12, pp.288-293, 2000.
DOI : 10.1016/S0025-326X(00)00127-2
, Sulfide-induced release of phosphate from sediments of coastal lagoons and the possible relation to the disappearance of Ruppia sp., Aquatic Microbial Ecology, vol.23, pp.85-95, 2000.
DOI : 10.3354/ame023085
, Seagrass Ecology, 2000.
DOI : 10.1017/CBO9780511525551
, Leaf production and nutrient contents of the seagrass Thalassodendron ciliatum in the proximity of a mangrove forest (Gazi Bay, Kenya), Aquatic Botany, vol.50, issue.2, pp.159-170, 1995.
DOI : 10.1016/0304-3770(95)00450-E
,
, , 2010.
, The European Water Framework Directive at the age of 10: a critical review of the achievements with recommendations for the future, The Science of the Total Environment, vol.408, pp.4007-4019
, Clear, crashing, turbid and back - long-term changes in macrophyte assemblages in a shallow lake, Freshwater Biology, vol.36, issue.509, pp.2027-2036, 2013.
DOI : 10.1016/S0304-3770(00)00086-3
, Resilience and Stability of Ecological Systems, Annual Review of Ecology and Systematics, vol.4, issue.1, pp.1-23, 1973.
DOI : 10.1146/annurev.es.04.110173.000245
, Role of decomposition of mangrove and seagrass detritus in sediment carbon and nitrogen cycling in a tropical mangrove forest, Marine Ecology Progress Series, vol.230, pp.87-101, 2002.
DOI : 10.3354/meps230087
, The role of submerged macrophytes and macroalgae in nutrient cycling: A budget approach, Estuarine, Coastal and Shelf Science, vol.154, 2015.
DOI : 10.1016/j.ecss.2015.01.001
, Estuarine, Coastal and Shelf Science, vol.154, pp.169-178
, Seaweed ecology and physiology, 2014.
DOI : 10.1017/CBO9781139192637
, FLOW VISUALIZATION AROUND SINGLE- AND MULTIPLE-BLADED SEAWEEDS WITH VARIOUS MORPHOLOGIES1, Journal of Phycology, vol.33, issue.3, pp.360-367, 1997.
DOI : 10.1111/j.0022-3646.1997.00360.x
, Resilience of Alternative Stable States during the Recovery of Shallow Lakes from Eutrophication: Lake Veluwe as a Case Study, Ecosystems, vol.72, issue.343, pp.4-16, 2007.
DOI : 10.1127/archiv-hydrobiol/152/2001/395
, Réseau de Suivi Lagunaire du Languedoc-Roussillon. Bilan des résultats, 2004.
, Réseau de Suivi Lagunaire du Languedoc-Roussillon : Bilan des résultats, p.484, 2006.
, Réseau de Suivi Lagunaire du Languedoc-Roussillon. Bilan des résultats 2013, p.219, 2014.
, , 2011.
, Guide de reconnaissance et de suivi des macrophytes des lagunes du Languedoc- Roussillon, p.148
, Mise à jour d'indicateurs du niveau d'eutrophisation des milieux lagunaires méditerranéens, Tomes 1 et 2. Rapport final. Rapport marché public n° 90 9851, p.412, 2000.
, Stability and Diversity of Ecosystems, Science, vol.18, issue.6988, pp.58-62, 2007.
DOI : 10.1038/nature02515
, Carbon sources and trophic structure in an eelgrass Zostera marina bed, based on stable isotope and fatty acid analyses, Marine Ecology Progress Series, vol.358, pp.103-114, 2008.
DOI : 10.3354/meps07327
, Restoration of shallow lakes by nutrient control and biomanipulation???the successful strategy varies with lake size and climate, Hydrobiologia, vol.92, issue.509, pp.269-285, 2007.
DOI : 10.1080/02705060.2004.9664746
,
, Lake responses to reduced nutrient loading ? an analysis of contemporary long-term data from 35 case studies, Freshwater Biology, vol.50, pp.1747-1771, 2005.
, The role of air-sea exchange in the marine nitrogen cycle, Biogeosciences Discussions, vol.3, issue.1, pp.183-210, 2006.
DOI : 10.5194/bgd-3-183-2006
URL : https://hal.archives-ouvertes.fr/hal-00297561
, Causes, historical development, effects and future challenges of a common environmental problem: eutrophication, pp.475-476, 2002.
DOI : 10.1007/978-94-017-2464-7_1
,
,
,
, Eutrophication of Chesapeake Bay: historical trends and ecological interactions, Marine Ecology Progress Series, vol.303, pp.1-29, 2005.
, Coastal hypoxia responses to remediation, Biogeosciences Discussions, vol.6, issue.4, 2009.
DOI : 10.5194/bgd-6-6889-2009
, Estuarine Perspectives, 2013.
, Coastal Lagoons: Critical Habitats of Environmental Change, 2010.
, Spatio-Temporal Dynamics of Exploited Groundfish Species Assemblages Faced to Environmental and Fishing Forcings: Insights from the Mauritanian Exclusive Economic Zone, PLOS ONE, vol.17, issue.100, p.141566, 2015.
DOI : 10.1371/journal.pone.0141566.s003
, Limited nutritional benefit to the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment, Estuarine, Coastal and Shelf Science, vol.68, issue.3-4, pp.675-685, 2006.
DOI : 10.1016/j.ecss.2006.03.016
, Salinity: animals-invertebrates, Marine ecology, vol.1, pp.821-995, 1971.
, Chapter 1 Coastal Lagoons, pp.1-8, 1994.
DOI : 10.1016/S0422-9894(08)70006-0
, Over the hills and further away from coast: global geospatial patterns of human and environment over the 20th???21st centuries, Environmental Research Letters, vol.11, issue.3, p.34010, 2016.
DOI : 10.1088/1748-9326/11/3/034010
,
, Recruitment of the Pacific oyster Crassostrea gigas in a shellfish-exploited Mediterranean lagoon: discovery, driving factors and a favorable environmental window, Marine Ecology Progress Series, vol.578, pp.1-17, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01928210
, On the maturing of restoration: Linking ecological research and restoration, Ecological Management and Restoration, vol.3, issue.2, pp.110-115, 2001.
DOI : 10.2307/2389612
, Seagrasses: Biology, Ecology and Conservation, 2006.
, Macroalgal-sediment nutrient interactions and their importance to macroalgal nutrition in a eutrophic estuary, Estuarine, Coastal and Shelf Science, vol.32, issue.3, pp.281-295, 1991.
DOI : 10.1016/0272-7714(91)90021-3
, Wind-driven sediment suspension controls light availability in a shallow coastal lagoon, Estuaries and Coasts, vol.70, issue.1, pp.102-112, 2007.
DOI : 10.1016/S0304-3770(01)00151-6
, Ouisse, soumis. Macrophyte changes from 1998 to 2015: response to oligotrophication of Mediterranean lagoons, Marine Ecology Progress Series
, Submerged benthic macrophytes in Mediterranean lagoons: distribution patterns in relation to water chemistry and depth, pp.1-26, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01826731
, Production dynamics of the eelgrass, Zostera marina in two bay systems on the south coast of the Korean peninsula, Marine Biology, vol.41, issue.5, pp.1091-1108, 2005.
DOI : 10.1016/B978-044450891-1/50002-5
, Trajectoires d'évolution des communautés phytoplanctoniques au cours de restauration écologique des milieux lagunaires méditerranéens, 2016.
, First steps of ecological restoration in Mediterranean lagoons: Shifts in phytoplankton communities, Estuarine, Coastal and Shelf Science, vol.180, pp.190-203, 2016.
DOI : 10.1016/j.ecss.2016.06.029
, The Function of Marine Critical Transition Zones and the Importance of Sediment Biodiversity, Ecosystems, vol.4, issue.5, pp.430-451, 2001.
DOI : 10.1007/s10021-001-0021-4
, Apports en azote et phosphore d'un bassin versant méditerranéen, 1995.
, Effect of dissolved free amino acids (DFAA) on the biomass and production of microphytobenthic communities, Journal of Experimental Marine Biology and Ecology, vol.330, issue.2, pp.469-481, 2006.
DOI : 10.1016/j.jembe.2005.09.012
, Seasonal changes in the abundance and distribution of submerged aquatic vegetation in a highly managed coastal lagoon, Hydrobiologia, vol.22, issue.1, p.105, 2008.
DOI : 10.1007/BF02784286
, Relationships between macroalgal functional form groups and substrata stability in a subtropical rocky-intertidal system, Journal of Experimental Marine Biology and Ecology, vol.74, issue.1, pp.13-34, 1984.
DOI : 10.1016/0022-0981(84)90035-2
URL : https://repository.si.edu/bitstream/handle/10088/2524/Littler1984b.pdf
, The role of benthic macrophytes and their associated macroinvertebrate community in coastal lagoon resistance to eutrophication, Marine Pollution Bulletin, vol.58, issue.12, pp.1827-1834, 2009.
DOI : 10.1016/j.marpolbul.2009.08.001
, The contribution of benthic macrofauna to the nutrient filter in coastal lagoons, Marine Pollution Bulletin, vol.62, issue.12, pp.2732-2740, 2011.
DOI : 10.1016/j.marpolbul.2011.09.014
, Recovery of marine animal populations and ecosystems, Trends in Ecology & Evolution, vol.26, issue.11, pp.595-605, 2011.
DOI : 10.1016/j.tree.2011.07.008
URL : http://www.vliz.be/imisdocs/publications/226136.pdf
, Macroalgal blooms alter community structure and primary productivity in marine ecosystems, Global Change Biology, vol.163, issue.9, pp.2712-2724, 2014.
DOI : 10.1007/s00442-010-1608-2
, Fluctuations of Animal Populations and a Measure of Community Stability, Ecology, vol.36, issue.3, pp.533-536, 1955.
DOI : 10.2307/1929601
, Seaweeds: Their Productivity and Strategy for Growth: The role of large marine algae in coastal productivity is far more important than has been suspected, Science, vol.73, issue.1, p.975, 1973.
DOI : 10.1111/j.1469-185X.1963.tb00788.x
, , 2015.
, Community metabolism in temperate maerl beds. II. Nutrient fluxes, Marine Ecology Progress Series, vol.335, pp.31-41, 2007.
DOI : 10.3354/meps335031
URL : https://hal.archives-ouvertes.fr/hal-00524717
, The fundamental role of ecological feedback mechanisms for the adaptive management of seagrass ecosystems??-??a review, Biological Reviews, vol.92, issue.8, pp.1521-1538, 2017.
DOI : 10.1016/S0006-3207(99)00057-9
, Recovery of lakes and coastal marine ecosystems from eutrophication: A global meta-analysis, Limnology and Oceanography, vol.123, issue.509, pp.507-518, 2017.
DOI : 10.1007/s10533-015-0074-7
, INFLUENCE OF NOISY ENVIRONMENTAL DATA ON CANONICAL CORRESPONDENCE ANALYSIS, Ecology, vol.78, issue.8, pp.2617-2623, 1997.
DOI : 10.1007/BF00047100
, National standards for the practice of ecological restoration in Australia, Restoration Ecology, vol.3, pp.4-32, 2016.
DOI : 10.3389/fevo.2015.00065
, Patterns of ammonium uptake within dense mats of the filamentous macroalga Chaetomorpha linum, Aquatic Botany, vol.59, issue.1-2, pp.99-115, 1997.
DOI : 10.1016/S0304-3770(97)00026-0
, Temporal and spatial variation in nitrogen fixation activity in the eelgrass Zostera marina rhizosphere, Marine Ecology Progress Series, vol.168, pp.245-258, 1998.
DOI : 10.3354/meps168245
, The Importance Of Primary Producers For Benthic Nitrogen And Phosphorus Cycling Estuarine Nutrient Cycling: The Influence of Primary Producers, pp.231-261, 2004.
, Eutrophication in shallow coastal bays and lagoons: the role of plants in the coastal filter, Marine Ecology Progress Series, vol.348, pp.1-18, 2007.
DOI : 10.3354/meps07132
, 05 relative à la typologie nationale des eaux de surface (cours d'eau, plans d'eau, eau de transition et eaux côtières) en application de la directive, Circulaire DCE n° 2005-11 du 29, 2000.
, Base de données pressions sur les lagunes méditérranéennes -Analyse des liens état -pression, 2013.
, Seasonal patterns of biomass variation of Ruppia cirrhosa (Petagna) Grande and Potamogeton pectinatus L. in a coastal lagoon, Scientia Marina, vol.53, pp.633-638, 1989.
, Spring and Summer Proliferation of Floating Macroalgae in a Mediterranean Coastal Lagoon (Tancada Lagoon, Ebro Delta, NE Spain), Estuarine, Coastal and Shelf Science, vol.51, issue.2, pp.215-226, 2000.
DOI : 10.1006/ecss.2000.0637
, Spatial Distribution and Ecophysiological Characteristics of Macrophytes in a Mediterranean Coastal Lagoon, 2002.
, Estuarine, Coastal and Shelf Science, vol.55, pp.403-413
, Respiration in coastal benthic communities_Chapitre 11 Respiration in Aquatic Ecosystems, 2005.
, Titration alkalinity of seawater, Marine Chemistry, vol.44, issue.2-4, pp.153-165, 1993.
DOI : 10.1016/0304-4203(93)90200-8
, Numerical modelling of vertical suspended solids concentrations and irradiance in a turbid shallow system (Vaccares, Se France), Hydrobiologia, vol.114, issue.236, pp.161-179, 2010.
DOI : 10.1127/archiv-hydrobiol/153/2002/623
URL : https://hal.archives-ouvertes.fr/hal-00839350
, The Water Framework Directive: Total environment or political compromise?, Science of The Total Environment, vol.400, issue.1-3, pp.32-41, 2008.
DOI : 10.1016/j.scitotenv.2008.04.029
, Alternatives to taxonomic-based approaches to assess changes in transitional water communities, Aquatic Conservation: Marine and Freshwater Ecosystems, pp.469-482, 2006.
DOI : 10.12681/mms.249
, Plantes aquatiques de Camargue et de Crau, 2010.
, Pharmaceuticals, alkylphenols and pesticides in Mediterranean coastal waters: Results from a pilot survey using passive samplers, Estuarine, Coastal and Shelf Science, vol.114, pp.82-92, 2012.
DOI : 10.1016/j.ecss.2011.09.009
, Spectrofluorometric assay of chlorophylls and phaeopigments using the least squares approximation technique. Deep Sea Research Part I: Oceanographic Research Papers, pp.1747-1765, 1993.
,
, Sulphate reduction and nitrogen fixation rates associated with roots, rhizomes and sediments from Zostera noltii and Spartina maritima meadows, Environmental Microbiology, vol.3, pp.63-71, 2001.
, Direct and indirect effects of the herbicides Glyphosate, Bentazone and MCPA on eelgrass (Zostera marina), Aquatic Toxicology, vol.82, issue.1, pp.47-54, 2007.
DOI : 10.1016/j.aquatox.2007.01.004
, Estuarine Nutrient Cycling: The Influence of Primary | Søren Laurentius Nielsen | Springer, 2004.
, Coastal marine eutrophication: A definition, social causes, and future concerns, Ophelia, vol.7, issue.1, pp.199-219, 1995.
DOI : 10.1016/S0166-445X(85)80006-0
, Eutrophication and the macroscope, Hydrobiologia, vol.47, issue.1, pp.5-19, 2009.
DOI : 10.1007/978-1-4612-5826-1_4
, Population responses of coastal zoobenthos to stress induced by drifting algal mats, Marine Ecology Progress Series, vol.140, pp.141-151, 1996.
DOI : 10.3354/meps140141
URL : http://www.int-res.com/articles/meps/140/m140p141.pdf
, Light regime and components of turbidity in a Mediterranean coastal lagoon, Estuarine, Coastal and Shelf Science, vol.77, issue.1, pp.123-133, 2008.
DOI : 10.1016/j.ecss.2007.09.008
, Spatiotemporal dynamics of submerged macrophytes in a Mediterranean coastal lagoon, Estuarine, Coastal and Shelf Science, vol.87, issue.1, pp.145-155, 2010.
DOI : 10.1016/j.ecss.2010.01.004
,
, Seagrass ecosystem trajectory depends on the relative timescales of resistance, recovery and disturbance, Marine Pollution Bulletin, 2017.
, Design decisions and implementation details in vegan. Vignette of the package vegan, 2016.
,
, vegan: Community Ecology Package, 2016.
, Estimating Seagrass Community Metabolism Using Benthic Chambers: The Effect of Incubation Time, Estuaries and Coasts, vol.130, issue.1, pp.1-7, 2015.
DOI : 10.1016/0022-0981(89)90197-4
, Benthic macrophyte metrics as bioindicators of water quality: towards overcoming typological boundaries and methodological tradition in Mediterranean and Black Seas, Hydrobiologia, vol.55, issue.2, pp.61-78, 2014.
DOI : 10.1016/j.marpolbul.2006.09.004
, Ecological evaluation of transitional and coastal waters: A marine benthic macrophytes-based model, Mediterranean Marine Science, vol.2, issue.2, pp.45-66, 2001.
DOI : 10.12681/mms.266
, Ecological Evaluation Index continuous formula (EEI-c) application: a step forward for functional groups, the formula and reference condition values, Mediterranean Marine Science, vol.12, issue.1, p.60, 2011.
DOI : 10.12681/mms.60
, Variation of structural and functional metrics in macrophyte communities within two habitats of eastern Mediterranean coastal lagoons: natural versus human effects, Aquatic Conservation: Marine and Freshwater Ecosystems, pp.45-61, 2008.
DOI : 10.1007/978-3-642-56166-5_6
,
, A Global Crisis for Seagrass Ecosystems, BioScience, vol.56, pp.987-996, 2006.
, Devenir du phosphore et de l'azote dans un contexte de restauration des milieux lagunaires méditerranéens -DEPART, 2014.
, Restauration des écosystèmes lagunaires : évaluation du rôle du sédiment et des herbiers à phanérogames, 2013.
, Community-level carbon flux variability over a tidal cycle in Zostera marina and Z. noltii beds, Marine Ecology Progress Series, vol.437, pp.79-87, 2011.
DOI : 10.3354/meps09274
URL : https://hal.archives-ouvertes.fr/hal-01255964
, Comparative study of methodologies to measure in situ the intertidal benthic community metabolism during immersion, Estuarine, Coastal and Shelf Science, vol.136, 2014.
DOI : 10.1016/j.ecss.2013.10.032
URL : https://hal.archives-ouvertes.fr/hal-01097252
, Estuarine, Coastal and Shelf Science, vol.136, pp.19-25
, Rôle des macrophytes dans la restauration des milieux lagunaires: distribution spatiale de Zostera noltei (MARES1) Ifremer, p.56, 2014.
, Freshwater seepages and ephemeral macroalgae proliferation in an intertidal bay: I Effect on benthic community structure and food web, Estuarine, Coastal and Shelf Science, vol.91, issue.2, pp.272-281, 2011.
DOI : 10.1016/j.ecss.2010.10.034
URL : https://hal.archives-ouvertes.fr/hal-01255966
, Putting Things in Even Better Order: The Advantages of Canonical Correspondence Analysis, Ecology, vol.74, issue.8, pp.2215-2230, 1993.
DOI : 10.2307/1939575
,
, Spatiotemporal dynamics of submerged macrophyte status and watershed exploitation in a Mediterranean coastal lagoon: Understanding critical factors in ecosystem degradation and restoration, Ecological Engineering, vol.102, pp.1-14, 2017.
, Anecdotes and the shifting baseline syndrome of fisheries, Trends in Ecology & Evolution, vol.10, issue.10, p.430, 1995.
DOI : 10.1016/S0169-5347(00)89171-5
, An annual nitrogen budget for a seagrass Zostera marina population, Marine Ecology Progress Series, vol.101, pp.169-177, 1993.
DOI : 10.3354/meps101169
, Nutrient control of estuarine macroalgae:growth strategy and the balance between nitrogen requirements and uptake, Marine Ecology Progress Series, vol.161, pp.155-163, 1997.
DOI : 10.3354/meps161155
, Nitrogen uptake and allocation in the seagrass Amphibolis antarctica, Aquatic Botany, vol.56, issue.2, pp.105-117, 1997.
DOI : 10.1016/S0304-3770(96)01100-X
, Mediterranean coastal lagoons in an ecosystem and aquatic resources management context. Physics and Chemistry of the Earth, pp.160-166, 2011.
,
, Les étangs littoraux de Corse: Cartographie des peuplements et types de fonds, p.33, 2000.
, Habitat use by Fishes in Estuaries and Other Brackish Areas, 2002.
DOI : 10.1002/9780470995228.ch2
, Fishes in Estuaries Blackwell Science Ltd, pp.10-53
,
, Modelling of oxygen and nitrogen cycling as a function of macrophyte community in the Thau lagoon, Continental Shelf Research, vol.23, pp.1877-1898, 2003.
, Factors influencing primary production of seagrass beds (Zostera noltii Hornem.) in the Thau lagoon (French Mediterranean coast), Journal of Experimental Marine Biology and Ecology, vol.259, issue.1, pp.63-84, 2001.
DOI : 10.1016/S0022-0981(01)00223-4
, Ibáñez, 2013. Spatio-Temporal Patterns of Submerged Macrophytes in Three Hydrologically Altered Mediterranean Coastal Lagoons, pp.414-429
, Artificial Habitats and Ecosystem Restoration: Managing for the Future, Bulletin of Marine Science, vol.55, pp.268-275, 1994.
, R: A language and environment for statistica computing. R foundation for Statistical Computing, 2016.
, Global change and eutrophication of coastal waters, ICES Journal of Marine Science, vol.79, issue.6, pp.1528-1537, 2009.
DOI : 10.1111/j.1752-1688.1999.tb04219.x
URL : https://academic.oup.com/icesjms/article-pdf/66/7/1528/1860002/fsp047.pdf
, Reduced Cover of Drifting Macroalgae Following Nutrient Reduction in Danish Coastal Waters, Estuaries and Coasts, vol.106, issue.1, pp.1664-1677, 2015.
DOI : 10.1073/pnas.0905620106
, Evaluation du potentiel d'approvisionnement naturel en naissains d'huîtres creuses en Méditerranée_projet PRONAMED, pp.2010-2011, 2012.
, The influence of organisms on the composition of sea-water. The sea: ideas and observations on progress in the study of the seas, 1963.
, Die Brackwasserfauna, Verhandlungen Der Deutschen Zoologischen Gesellschaft, vol.36, pp.34-74, 1934.
, Eutrophication: Definition, history and effects, Eutrophication in Coastal Marine Ecosystems, pp.1-19, 1996.
DOI : 10.1016/B978-0-444-89990-3.50011-0
URL : http://orbit.dtu.dk/en/publications/eutrophication-definition-history-and-effects(c553ecc1-1596-429f-9ded-b05999730205).html
, Linear Regressions in Fishery Research, Journal of the Fisheries Research Board of Canada, vol.30, issue.3, pp.409-434, 1973.
DOI : 10.1139/f73-072
,
, Recovery of Danish Coastal Ecosystems After Reductions in Nutrient Loading: A Holistic Ecosystem Approach, Estuaries and Coasts, vol.39, pp.82-97, 2016.
, The role of periphyton during the re-colonization of a shallow lake with submerged macrophytes, Hydrobiologia, vol.506, issue.1-3, pp.525-530, 2003.
DOI : 10.1023/B:HYDR.0000008560.73832.1c
, Ecological growth strategies in the seaweeds Gracilaria foliifera (Rhodophyceae) and Ulva sp. (Chlorophyceae): Soluble nitrogen and reserve carbohydrates, Marine Biology, vol.16, issue.3, pp.251-259, 1982.
DOI : 10.1007/BF00397030
, Effects of disturbances caused by coastal constructions on spatial structure, growth dynamics and photosynthesis of the seagrass Posidonia oceanica, Marine Pollution Bulletin, vol.46, issue.12, pp.1523-1533, 2003.
DOI : 10.1016/j.marpolbul.2003.08.021
, Nitrification, denitrification, and nitrate ammonification in sediments of two coastal lagoons in Southern France, Hydrobiologia, vol.329, issue.1-3, pp.133-141, 1996.
DOI : 10.1007/BF00034553
, Nitrogen uptake and storage by the red alga Gracilaria tikvahiae, 1979.
, Aquaculture (Netherlands)
, Indicateur macrophytes dans les lagunes oligo-halines et mésohalines, p.71, 2012.
, , p.66, 2014.
, Balancen mellem autotrofe komponenter i tempererede søer med forskellig naeringsbelastning, Vatten, vol.36, pp.104-115, 1980.
, Interactions among phytoplankton, periphyton, and macrophytes in temperate freshwaters and estuaries, Aquatic Botany, vol.41, issue.1-3, pp.137-175, 1991.
DOI : 10.1016/0304-3770(91)90042-4
,
, 100 years of vegetation decline and recovery in Lake Fure, Denmark, Journal of Ecology, vol.96, pp.260-271, 2008.
, Réseaux de surveillance DCE-Campagne 2012-District " Rhône et côtiers méditerranéens, 2013.
, Catastrophic shifts in ecosystems, Nature, vol.19, issue.201, pp.591-596, 2001.
DOI : 10.1016/S0277-3791(99)00081-5
, Distribution and dynamics of submerged vegetation in a chain of shallow eutrophic lakes, Aquatic Botany, vol.42, issue.3, pp.199-216, 1992.
DOI : 10.1016/0304-3770(92)90022-B
, Alternative equilibria in shallow lakes, Trends in Ecology & Evolution, vol.8, issue.8, pp.275-279, 1993.
DOI : 10.1016/0169-5347(93)90254-M
, Factors influencing seaweed responses to eutrophication: some results from EU-project EUMAC, Journal of applied Phycology, vol.11, pp.69-78, 1999.
DOI : 10.1007/978-94-011-4449-0_72
, Marine Benthic Vegetation: Recent Changes and the Effects of Eutrophication, 1996.
DOI : 10.1007/978-3-642-61398-2
, Macroalgal diversity along the Baltic Sea salinity gradient challenges Remane???s species-minimum concept, Marine Pollution Bulletin, vol.62, issue.9, pp.1948-1956, 2011.
DOI : 10.1016/j.marpolbul.2011.06.033
, ABCDaire sur l'écologie de la restauration de la SER internationale. The SER International Primer on Ecological Restoration. www.ser.org & Tucson: Society for Ecological Restoration International, SER, 2004.
, Distribution and production of macrophytes and phytoplankton in the lagoon of Venice: comparison of actual and past situation, Hydrobiologia, vol.23, issue.1, pp.71-85, 2007.
DOI : 10.1007/978-88-470-2105-1_59
, Validation of the Macrophyte Quality Index (MaQI) set up to assess the ecological status of Italian marine transitional environments, Hydrobiologia, vol.9, issue.2, pp.117-141, 2009.
DOI : 10.12681/mms.249
, Macrophyte production in a shallow coastal lagoon. Part II: Coupling with sediment, SPM and tissue carbon, nitrogen and phosphorus concentrations, Marine Environmental Research, vol.47, issue.3, pp.285-309, 1999.
DOI : 10.1016/S0141-1136(98)00122-6
, Macroalgae, Nutrient Cycles, and Pollutants in the Lagoon of Venice, Estuaries, vol.15, issue.4, p.517, 1992.
DOI : 10.2307/1352394
, Nitrogen Uptake by Leaves and Roots of the Seagrass Zostera marina L., Botanica Marina, vol.27, issue.12, pp.547-556, 2009.
DOI : 10.3354/meps010067
, Lagrangian descriptions of marine larval dispersion, Marine Ecology Progress Series, vol.260, pp.83-96, 2003.
DOI : 10.3354/meps260083
, Approche simultanée de K couples de tableaux: application à l'étude des relations pathologie végétaleenvironnement, pp.31-46, 1999.
, Lake restoration: successes, failures and long-term effects, Journal of Applied Ecology, vol.21, issue.201, pp.1095-1105, 2007.
DOI : 10.1007/978-1-4612-3838-6_4
, along an anthropogenic eutrophication gradient in French Mediterranean coastal lagoons, Canadian Journal of Fisheries and Aquatic Sciences, vol.50, issue.4, pp.743-753, 2010.
DOI : 10.1007/BF02804900
, Is the atmosphere really an important source of reactive nitrogen to coastal waters?, Continental Shelf Research, vol.25, issue.16, pp.2022-2035, 2005.
DOI : 10.1016/j.csr.2005.07.004
, Nutrient uptake by leaves and roots of the seagrass Thalassia hemprichii in the Spermonde Archipelago, Indonesia, Marine Ecology Progress Series, vol.134, pp.195-206, 1996.
DOI : 10.3354/meps134195
, Influence of salinity and sediment resuspension on macrophyte germination in coastal lakes, Journal of Limnology, vol.70, issue.1, pp.11-20, 2011.
DOI : 10.4081/jlimnol.2011.11
, Aquatic chemistry. Chemical Equilibria and Rates in Natural Waters, 1996.
, Alternative states and positive feedbacks in restoration ecology, Trends in Ecology & Evolution, vol.19, issue.1, pp.46-53, 2004.
DOI : 10.1016/j.tree.2003.10.005
, Notes on coastal lagoon typology in the light of the EU Water Framework Directive: Italy as a case study Aquatic Conservation: Marine and Freshwater Ecosystems, pp.457-467, 2006.
, Effects of Sodium Chloride on the Sago Pondweed, The Journal of Wildlife Management, vol.29, issue.4, pp.838-845, 1965.
DOI : 10.2307/3798562
, Eutrophication and macroalgal blooms in temperate and tropical coastal waters: nutrient enrichment experiments with Ulva spp., Global Change Biology, vol.185, pp.2624-2637, 2010.
DOI : 10.2216/i0031-8884-21-3-336.1
, Life in the salinity gradient: Discovering mechanisms behind a new biodiversity pattern, Estuarine, Coastal and Shelf Science, vol.135, pp.317-327, 2013.
DOI : 10.1016/j.ecss.2013.10.013
, Canonical Correspondence Analysis: A New Eigenvector Technique for Multivariate Direct Gradient Analysis, Ecology, vol.67, issue.5, pp.1167-1179, 1986.
DOI : 10.2307/1938672
, The analysis of vegetation-environment relationships by canonical correspondence analysis, Vegetatio, vol.48, issue.1-3, pp.69-77, 1987.
DOI : 10.1007/BF00038688
, Canonical community ordination. Part I: Basic theory and linear methods, ??coscience, vol.1, issue.2, pp.127-140, 1994.
DOI : 10.2307/3236170
, Leaf versus root nitrogen uptake by the surfgrass Phyllospadix torreyi, Marine Ecology Progress Series, vol.149, pp.267-277, 1997.
DOI : 10.3354/meps149267
URL : http://www.int-res.com/articles/meps/149/m149p267.pdf
,
,
, Framework for understanding marine ecosystem health, Marine Ecology Progress Series, vol.494, pp.1-27, 2013.
,
, Defining and detecting undesirable disturbance in the context of marine eutrophication, Marine Pollution Bulletin, vol.55, pp.282-297, 2007.
, SIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES, Ecology, vol.85, issue.1, pp.272-283, 2004.
DOI : 10.1007/BF02294050
URL : https://hal.archives-ouvertes.fr/hal-00698260
, The role of macrophytes in habitat structuring in aquatic ecosystems: methods of measurement, causes and consequences on animal assemblages' composition and biodiversity, Acta Limnologica Brasiliensia, vol.22, issue.02, pp.218-236, 2010.
DOI : 10.4322/actalb.02202011
, Spatial and temporal variation in seagrass coverage in Southwest Florida: assessing the relative effects of anthropogenic nutrient load reductions and rainfall in four contiguous estuaries, Marine Pollution Bulletin, vol.50, issue.8, pp.797-805, 2005.
DOI : 10.1016/j.marpolbul.2005.02.010
, Review of nitrogen and phosphorus metabolism in seagrasses, Journal of Experimental Marine Biology and Ecology, vol.250, issue.1-2, pp.133-167, 2000.
DOI : 10.1016/S0022-0981(00)00195-7
URL : http://directory.umm.ac.id/Data Elmu/jurnal/J-a/Journal of Experimental Marine Biology and Ecology/Vol250.Issue1-2.Jul2000/3492.pdf
,
, Temporal stability of otolith elemental fingerprints discriminates among lagoon nursery habitats, Estuarine, Coastal and Shelf Science, vol.131, pp.182-193, 2013.
, Origins and quantification of nitrogen inputs into a coastal lagoon: Application to the Thau lagoon (France), Ecological Modelling, vol.193, issue.1-2, pp.19-33, 2006.
DOI : 10.1016/j.ecolmodel.2005.07.038
URL : https://hal.archives-ouvertes.fr/hal-01575634
, Macroalgal community response to re-oligotrophication in Saronikos Gulf, Marine Ecology Progress Series, vol.472, pp.73-85, 2013.
DOI : 10.3354/meps10060
, EFFECTS OF INORGANIC N AVAILABILITY ON ALGAL PHOTOSYNTHESIS AND CARBON METABOLISM, Journal of Phycology, vol.24, issue.1, pp.14-20, 1991.
DOI : 10.1007/BF00407026
, Uptake of urea and amino acids by the macroalgae Ulva lactuca (Chlorophyta) and Gracilaria vermiculophylla (Rhodophyta), Marine Ecology Progress Series, vol.294, pp.161-172, 2005.
DOI : 10.3354/meps294161
, The Central Role of Grazing in Seagrass Ecology SEAGRASSES: BIOLOGY, ECOLOGYAND CONSERVATION, pp.463-501, 2007.
, Couplings of Watersheds and Coastal Waters: Sources and Consequences of Nutrient Enrichment in Waquoit Bay, Massachusetts, Couplings of watersheds and coastal waters: Sources and consequences of nutrient enrichment in Waquoit Bay, pp.443-457, 1992.
DOI : 10.2307/1352389
, Macroalgal blooms in shallow estuaries: Controls and ecophysiological and ecosystem consequences, Limnology and Oceanography, vol.42, issue.5part2, pp.1105-1118, 1997.
DOI : 10.4319/lo.1997.42.5_part_2.1105
, Positive Feedbacks in Seagrass Ecosystems: Implications for Success in Conservation and Restoration, Ecosystems, vol.51, issue.8, pp.1311-1322, 2007.
DOI : 10.1016/0077-7579(61)90004-7
, Community metabolism of intertidal flats in the Ems-Dollard estuary, Marine Biology, vol.28, issue.1, pp.95-108, 1982.
DOI : 10.1007/BF00397260
, Ecological studies on Potamogeton pectinatus L. I. General characteristics, biomass production and life cycles under field conditions, Aquatic Botany, vol.31, issue.3-4, pp.211-258, 1988.
DOI : 10.1016/0304-3770(88)90015-0
, Modifications r??centes de la v??g??tation aquatique de l'??tang du Vaccar??s (Camargue, France) li??es aux perturbations anthropiques, Annales de Limnologie, vol.25, issue.1, pp.25-38, 1989.
DOI : 10.1051/limn/1989002
, The Venice System for the Classification of Marine Waters According to Salinity, Limnology and Oceanography, vol.3, pp.346-347, 1958.
, The ecology of Ruppia-dominated communities in Western Europe. II. Synecological classification. Structure and dynamics of the macroflora and macrofauna communities, Aquatic Botany, vol.8, pp.1-85, 1980.
DOI : 10.1016/0304-3770(80)90044-3
, Actualisation de la flore des macrophytes des étangs de Thau (Hérault) et de Salses-Leucate (Aude-Pyrénées-Orientales) In: PNEC " Lagunes Méditerranéennes, Thème 1, le compartiment " Macrophytes " . GIS Posidonie - IFREMER Report, p.64, 2000.
, Checklist of the macroalgae of Thau Lagoon (H??rault, France), a hot spot of marine species introduction in Europe, Oceanologica Acta, vol.24, issue.1, pp.29-49, 2001.
DOI : 10.1016/S0399-1784(00)01127-0
, , 1996.
, Macrophyte communities and their impact on benthic fluxes of oxygen, sulphide and nutrients in shallow eutrophic environments, Hydrobiologia, vol.329, pp.105-119
, Community shifts, alternative stable states, biogeochemical controls and feedbacks in eutrophic coastal lagoons: a brief overview, Aquatic Conservation: Marine and Freshwater Ecosystems, pp.105-117, 2008.
DOI : 10.1007/978-88-470-2105-1_59
, Spatial and temporal description of the dystrophic crisis in Lesina lagoon during summer, Transitional Waters Bulletin, vol.3, pp.47-62, 2008.
, Contribution of exotic species, environmental factors and spatial components to the macrophyte assemblages, 2006.
, Ecological Modelling, vol.193, pp.119-131
, Sources and transfer of organic matter in food webs of a Mediterranean coastal environment: Evidence for spatial variability, Estuarine, Coastal and Shelf Science, vol.66, issue.3-4, pp.459-467, 2006.
DOI : 10.1016/j.ecss.2005.10.004
, The fate of organic matter sources in coastal environments: a comparison of three Mediterranean lagoons, Hydrobiologia, vol.129, issue.1, pp.67-79, 2008.
DOI : 10.1007/BF02803388
, Dissolved organic nitrogen uptake by seagrasses, Limnology and Oceanography, vol.53, issue.2, pp.542-548, 2008.
DOI : 10.4319/lo.2008.53.2.0542
, , 2013.
, Resilience, Adaptability and Transformability in Social?ecological Systems. Ecology and Society, vol.9, 2004.
, Nitrogen fixation in seagrass meadows: Regulation, plant-bacteria interactions and significance to primary productivity, Ecology Letters, vol.117, issue.1, pp.58-71, 2000.
DOI : 10.1007/BF00689351
, Seasonal variations in nitrogen-fixation (acetylene reduction) and sulphate-reduction rates in the rhizosphere of Zostera noltii: nitrogen fixation by sulphate-reducing bacteria, Marine Biology, vol.52, issue.4, pp.619-628, 1996.
DOI : 10.1007/978-1-4757-2191-1_21
, Temporal shifts in top-down vs. bottom-up control of epiphytic algae in a seagrass ecosystem, Ecology, vol.94, issue.2, pp.510-520, 2013.
DOI : 10.1016/0044-8486(74)90029-5
, World Register of Marine Species Available from http, 2016.
,
, Eutrophication in transitional waters: an overview, Transitional Waters Monographs, vol.2, pp.1-78, 2008.
, Hysteresis in vegetation shift - Lake Mogan prognoses, Ecological Modelling, vol.164, pp.227-238, 2003.
, for each of the studied lagoon sectors (see Table 1 in the article) In between brackets, the number corresponds to the benthic station numbers (only stations with soft sediment) and the letter indicates the sampling method (see above in the text of the supplementary material) The water column sampling was done every years. Lagoons Sectors (code) Macrophyte sampling years water sampling years, Table A1 Sampling frequency of macrophytes and water column parameters, pp.2006-2009, 2001.
, , pp.2013-2010, 1998.
, , p.2013, 2000.
, , pp.2012-2014, 1998.
, , p.2013, 2009.
, , pp.2013-2012, 1998.
, , p.2012, 1998.
, , p.2013, 2009.
, , pp.2012-1998, 1999.
, , pp.2010-2013, 1999.
, Ingril Nord INN, vol.3555, issue.55, pp.2011-2014, 1999.
, (6,c) La Palme LAP, pp.2011-2014, 1998.
, , pp.2011-2012, 2006.
, , pp.2010-2013, 1999.
, , pp.2011-2014, 2001.
, , pp.2013-2010, 1998.
, , p.2012, 1998.
, , pp.2010-51, 1996.
, , p.2013, 2000.
, , pp.2011-2014, 2001.
, Berre Canet Saint-Nazaire La Marette Leucate Or Prevost Scamandre-Charnier-Crey Thau, 2003.
, Méthodologie d'étude des macrophytes en plans d'eau. Mise en oeuvre de la Directive Cadre Européenne sur l'Eau. Cemagref, p.28, 2009.
, Réseau de Suivi Lagunaire du Languedoc-Roussillon, Bilan des résultats 2005. Rapport RSL-06, 2006.
, Mise à jour d'indicateurs du niveau d'eutrophisation des milieux lagunaires méditerranéens, Tomes 1 et 2. Rapport final. Rapport marché public n° 90 9851, p.412, 2000.
, Les étangs littoraux de Corse: Cartographie des peuplements et types de fonds, p.33, 2000.
, , p.66, 2013.
, Actualisation de la flore des macrophytes des étangs de Thau (Hérault) et de Salses-Leucate (Aude-Pyrénées-Orientales) In: PNEC " Lagunes Méditerranéennes, Thème 1, le compartiment " Macrophytes " . GIS Posidonie -IFREMER Report, p.64, 2000.
, Checklist of the macroalgae of Thau Lagoon (H??rault, France), a hot spot of marine species introduction in Europe, Oceanologica Acta, vol.24, issue.1, pp.29-49, 2001.
DOI : 10.1016/S0399-1784(00)01127-0
, Remerciements
, Je souhaite tout d'abord remercier Chantal et Anaïs de l'Agence de l'Eau RMC sans qui cette aventure n
, n'as pas encore le statut de directeur, un jour peut être?) Je sais que je me pose beaucoup trop de questions (et pas toujours les bonnes) et que ce n'était pas toujours simple à gérer. Comme on dit le mieux est l'ennemi du bien, Merci aussi pour votre patience, votre aide et votre bienveillance tout au long de cette thèse. Votre complémentarité et votre disponibilité m'ont beaucoup aidé dans l
, Je souhaite remercier tous les membres du jury d'avoir accepté de corriger ce travail de thèse
,
, je crois que tous les membres (permanents et non permanents) de ce laboratoire ont participé de près ou de loin à cette thèse que ce soit au laboratoire ou sur le terrain
, pour son aide précieuse sur le terrain et au laboratoire pour identifier et trier les macrophytes pendant de longues heures (heureusement que la radio était là !)
, Greg et Samuel pour l'analyse de tous les échantillons de nutriments
, Vincent) qui ont bravé le froid et qui se battaient tous pour venir plonger dans la grande barrière de cascail du Méjean! Merci aux filtreurs/trieurs surtout ceux et celles qui ont filtré les échantillons sans l'aide de la perceuse et juste à la force de leurs petits bras musclés, j'espère n'avoir oublié personne, Merci aux plongeurs multifonctions Merci à Danièle et Gene pour leur bonne humeur ! Merci à Annie pour sa bienveillance et ses conseils
, un ami toujours prêt à venir plonger et aider sur le terrain, je note tout de même que tu n'es pas venu pendant la manip d'été alors que je t'avais
, Enfin merci à Vincent de me soutenir et de me supporter