, Front. Neural Circuits, vol.7, p.65, 2013.
, Nat. Methods, vol.10, pp.413-420, 2013.
, Nat. Methods, vol.11, pp.883-884, 2014.
, Vision Res, vol.46, pp.2625-2635, 2006.
, Curr. Biol, vol.22, pp.2042-2047, 2012.
, Nat. Methods, vol.8, pp.757-760, 2011.
, Curr. Opin. Neurobiol, vol.19, pp.644-647, 2009.
, J. Neurosci, vol.23, pp.3726-3734, 2003.
A contribution to the theory of the microscope and the nature of microscopic vision, Proc. Bristol Nat. Soc, vol.1, pp.200-261, 1874. ,
VII.-On the Estimation of Aperture in the Microscope, Journal of Microscopy, vol.1, issue.3, pp.388-423, 1881. ,
URL : https://hal.archives-ouvertes.fr/in2p3-00005914
XV.-The Relation of Aperture and Power in the Microscope (continued), Journal of Microscopy, vol.3, issue.6, pp.790-812, 1883. ,
Perception as a closed-loop convergence process, Elife, vol.5, p.12830, 2016. ,
Brain-wide neuronal dynamics during motor adaptation in zebrafish, Nature, issue.7399, pp.471-477, 2012. ,
, , 2013.
, Whole-brain functional imaging at cellular resolution using light-sheet microscopy, Nature methods, vol.10, issue.5, pp.413-420
,
Optimization of a GCaMP calcium indicator for neural activity imaging, Journal of Neuroscience, vol.32, issue.40, pp.13819-13840, 2012. ,
Anatomy and discharge properties of pre-motor neurons in the goldfish medulla that have eye-position signals during fixations, Journal of Neurophysiology, vol.84, issue.2, pp.1035-1049, 2000. ,
In vivo intracellular recording and perturbation of persistent activity in a neural integrator, Nature neuroscience, vol.4, issue.2, p.184, 2001. ,
Correlated discharge among cell pairs within the oculomotor horizontal velocity-toposition integrator, Journal of Neuroscience, vol.23, issue.34, pp.10852-10858, 2003. ,
Functional dissection of circuitry in a neural integrator, Nature neuroscience, vol.10, issue.4, p.494, 2007. ,
Mechanisms causing plateau potentials in spinal motoneurones, Sensorimotor Control of Movement and Posture, pp.219-226, 2002. ,
Differentiation and maturation of zebrafish dorsal root and sympathetic ganglion neurons, Journal of Comparative Neurology, vol.446, issue.3, pp.267-275, 2002. ,
Evolution of eyes and photoreceptor cell types, International Journal of Developmental Biology, vol.47, issue.7-8, pp.563-571, 2003. ,
Optical control of zebrafish behavior with halorhodopsin, Proceedings of the National Academy of Sciences, vol.106, issue.42, pp.17968-17973, 2009. ,
Optical control of zebrafish behavior with halorhodopsin, Proceedings of the National Academy of Sciences, vol.106, issue.42, pp.17968-17973, 2009. ,
Signal transduction in bacterial chemotaxis, Bioessays, vol.28, issue.1, pp.9-22, 2006. ,
Temperature sensation in Drosophila, Current Opinion in Neurobiology, vol.34, pp.8-13, 2015. ,
Chemosensory neurons with overlapping functions direct chemotaxis to multiple chemicals in C. elegans, Neuron, vol.7, issue.5, pp.729-742, 1991. ,
Ultramicroscopy: 3D reconstruction of large microscopical specimens, Journal of biophotonics, vol.1, issue.1, pp.36-42, 2008. ,
The neurobiology of saccadic eye movements, Metrics. Reviews of oculomotor research, vol.3, p.13, 1989. ,
Climate-driven trends in contemporary ocean productivity, Nature, vol.444, issue.7120, pp.752-755, 2006. ,
DOI : 10.1038/nature05317
Random walks in biology, 1993. ,
DOI : 10.1063/1.2819954
Chemotaxis in Escherichia coli analysed by three-dimensional tracking, Nature, vol.239, issue.5374, pp.500-504, 1972. ,
Physics of chemoreception, Biophysical journal, vol.20, issue.2, pp.193-219, 1977. ,
DOI : 10.1016/s0006-3495(77)85544-6
URL : https://doi.org/10.1016/s0006-3495(77)85544-6
Neuronal mechanisms underlying eye-head coordination, Progress in brain research, vol.64, pp.325-343, 1986. ,
DOI : 10.1016/s0079-6123(08)63427-5
An olfactory neuron responds stochastically to temperature and modulates Caenorhabditis elegans thermotactic behavior, Proceedings of the National Academy of Sciences, vol.105, issue.31, pp.11002-11007, 2008. ,
DOI : 10.1073/pnas.0805004105
URL : http://www.pnas.org/content/105/31/11002.full.pdf
Neural circuit flexibility in a small sensorimotor system, Current opinion in neurobiology, vol.21, issue.4, pp.544-552, 2011. ,
DOI : 10.1016/j.conb.2011.05.019
URL : http://europepmc.org/articles/pmc3177960?pdf=render
Nonlinear optics: past, present, and future, IEEE Journal of Selected Topics in Quantum Electronics, vol.6, issue.6, pp.876-880, 2000. ,
Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms, Nature photonics, vol.9, issue.2, pp.113-119, 2015. ,
DOI : 10.1038/nphoton.2014.323
URL : http://europepmc.org/articles/pmc4317333?pdf=render
Volume electron microscopy for neuronal circuit reconstruction, Current opinion in neurobiology, vol.22, issue.1, pp.154-161, 2012. ,
DOI : 10.1016/j.conb.2011.10.022
URL : https://zenodo.org/record/1258851/files/article.pdf
A behavioral screen for isolating zebrafish mutants with visual system defects, Proceedings of the National Academy of Sciences, vol.92, issue.23, pp.10545-10549, 1995. ,
DOI : 10.1073/pnas.92.23.10545
URL : http://www.pnas.org/content/92/23/10545.full.pdf
Basic mechanisms for graded persistent activity: discrete attractors, continuous attractors, and dynamic representations, Current opinion in neurobiology, vol.13, issue.2, pp.204-211, 2003. ,
DOI : 10.1016/s0959-4388(03)00050-3
On the nature of the fundamental activity of the nervous centres; together with an analysis of the conditioning of rhythmic activity in progression, and a theory of the evolution of function in the nervous system, The Journal of physiology, vol.48, issue.1, pp.18-46, 1914. ,
Animal-to-animal variability in motor pattern production in adults and during growth, Journal of Neuroscience, vol.25, issue.7, pp.1611-1619, 2005. ,
Modulation of locomotor activity in larval zebrafish during light adaptation, Journal of Experimental Biology, vol.210, issue.14, pp.2526-2539, 2007. ,
Distinct retinal pathways drive spatial orientation behaviors in zebrafish navigation, Current biology, vol.20, issue.4, pp.381-386, 2010. ,
Present concepts of oculomotor organization, Reviews of oculomotor research, vol.2, pp.3-32, 1988. ,
Present concepts of oculomotor organization, Progress in brain research, vol.151, pp.1-42, 2006. ,
Half-center oscillators underlying rhythmic movements, Nature, vol.261, pp.146-148, 1995. ,
Genetically targeted optical electrophysiology in intact neural circuits, Cell, vol.154, issue.4, pp.904-913, 2013. ,
DOI : 10.1016/j.cell.2013.07.027
URL : https://doi.org/10.1016/j.cell.2013.07.027
Dissecting a circuit for olfactory behaviour in Caenorhabditis elegans, Nature, vol.450, issue.7166, p.63, 2007. ,
DOI : 10.1038/nature06292
, , 1994.
, Green fluorescent protein as a marker for gene expression, Science, pp.802-805
Computational principles of memory, Nature neuroscience, vol.19, issue.3, p.394, 2016. ,
, , 2016.
, Saccadic and Postsaccadic Disconjugacy in Zebrafish Larvae Suggests Independent Eye Movement Control. Frontiers in systems neuroscience, p.10
Ultrasensitive fluorescent proteins for imaging neuronal activity, Nature, issue.7458, pp.295-300, 2013. ,
Navigational strategies underlying phototaxis in larval zebrafish. Frontiers in systems neuroscience, vol.8, 2014. ,
Activation and inhibition of tph2 serotonergic neurons operate in tandem to influence larval zebrafish preference for light over darkness, Sci. Rep, vol.6, 2016. ,
Whole-animal functional and developmental imaging with isotropic spatial resolution, Nature methods, 2015. ,
The AFD sensory neurons encode multiple functions underlying thermotactic behavior in Caenorhabditis elegans, Journal of Neuroscience, vol.26, issue.28, pp.7444-7451, 2006. ,
Temporal activity patterns in thermosensory neurons of freely moving Caenorhabditis elegans encode spatial thermal gradients, Journal of Neuroscience, vol.27, issue.23, pp.6083-6090, 2007. ,
Short-term adaptation and temporal processing in the cryophilic response of Caenorhabditis elegans, Journal of neurophysiology, vol.97, issue.3, pp.1903-1910, 2007. ,
Functional networks from inverse modeling of neural population activity. Current Opinion in Systems Biology, 2017. ,
Electrooculographic syndrome in monkeys after pontine reticular formation lesions, Archives of neurology, vol.18, issue.1, pp.78-92, 1968. ,
Optical sectioning microscopy, Nature methods, vol.2, issue.12, pp.920-931, 2005. ,
Spatial patterns of persistent neural activity vary with the behavioral context of short-term memory, Neuron, vol.85, issue.4, pp.847-860, 2015. ,
On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life, John Murray, 1859. ,
,
Control of oscillation periods and phase durations in half-center central pattern generators: a comparative mechanistic analysis, Journal of computational neuroscience, vol.27, issue.1, p.3, 2009. ,
A hierarchical model of binocular rivalry, Neural Computation, vol.10, issue.5, pp.1119-1135, 1998. ,
, Theoretical neuroscience, vol.806, 2001.
,
Behavior of neurons in the abducens nucleus of the alert cat-I, Motoneurons. Neuroscience, vol.17, issue.4, pp.929-952, 1986. ,
Photon upmanship: why multiphoton imaging is more than a gimmick, Neuron, vol.18, issue.3, pp.351-357, 1997. ,
Two-photon laser scanning fluorescence microscopy, Science, vol.248, issue.4951, pp.73-76, 1990. ,
Trp ion channels and temperature sensation, Annu. Rev. Neurosci, vol.29, pp.135-161, 2006. ,
Role of sensory-evoked NMDA plateau potentials in the initiation of locomotion, Science, vol.278, issue.5340, pp.1122-1125, 1997. ,
, Quantum mechanics, 1958.
Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain, Nature methods, vol.4, issue.4, pp.331-336, 2007. ,
Two-photon absorption properties of fluorescent proteins, Nature methods, vol.8, issue.5, pp.393-399, 2011. ,
,
Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion, 2016. ,
Optically sectioned imaging by oblique plane microscopy, Optics express, vol.16, issue.25, pp.20306-20316, 2008. ,
The development of vision in the zebrafish (Danio rerio), Developmental biology, vol.180, issue.2, pp.646-663, 1996. ,
Graded persistent activity in entorhinal cortex neurons, Nature, vol.420, issue.6912, pp.173-179, 2002. ,
Eye-head coordination during free exploration in human and cat, Annals of the New York Academy of Sciences, vol.1164, issue.1, pp.353-366, 2009. ,
Eye evolution at high resolution: the neuron as a unit of homology, Developmental biology, vol.332, issue.1, pp.70-79, 2009. ,
Microscopy with selfreconstructing beams, Nature Photonics, vol.4, issue.11, pp.780-785, 2010. ,
Seeing the whole picture: A comprehensive imaging approach to functional mapping of circuits in behaving zebrafish, Neuroscience, vol.296, pp.26-38, 2015. ,
Deep brain photoreceptors control light-seeking behavior in zebrafish larvae, Current Biology, vol.22, issue.21, pp.2042-2047, 2012. ,
Statistical analysis of circular data, 1995. ,
The orientation of animals, 1961. ,
Generation of optical harmonics, Physical Review Letters, vol.7, issue.4, p.118, 1961. ,
Combined eye-head gaze shifts produced by electrical stimulation of the superior colliculus in rhesus monkeys, J. Neurophysiol, vol.76, pp.927-952, 1996. ,
Brainstem control of saccadic eye movements, Annual review of neuroscience, vol.8, issue.1, pp.307-337, 1985. ,
Behavior of the position vestibular pause (PVP) interneurons of the vestibuloocular reflex during headfree gaze shifts in the monkey, Journal of neurophysiology, vol.94, issue.6, pp.4481-4490, 2005. ,
In vivo neuronal action potential recordings via three-dimensional microscale needle-electrode arrays, Scientific reports, vol.4, p.4868, 2014. ,
Second-harmonic imaging in the scanning optical microscope, Optical and Quantum Electronics, vol.10, issue.5, pp.435-439, 1978. ,
, , 2010.
, Running hot and cold: behavioral strategies, neural circuits, and the molecular machinery for thermotaxis in C. elegans and Drosophila, Genes & development, vol.24, issue.21, pp.2365-2382
The zebrafish ortholog of TRPV1 is required for heatinduced locomotion, Journal of Neuroscience, vol.33, issue.12, pp.5249-5260, 2013. ,
Historical perspective on the development and evolution of eyes and photoreceptors, International journal of developmental biology, vol.48, issue.8-9, pp.707-717, 2004. ,
Computations underlying Drosophila photo-taxis, odor-taxis, and multi-sensory integration, 2015. ,
DOI : 10.7554/elife.06229
URL : https://doi.org/10.7554/elife.06229
Drinks like a fish: zebra fish (Danio rerio) as a behavior genetic model to study alcohol effects, Pharmacology biochemistry and behavior, vol.67, issue.4, pp.773-782, 2000. ,
Controlling airborne cues to study small animal navigation, Nature methods, vol.9, issue.3, pp.290-296, 2012. ,
DOI : 10.1038/nmeth.1853
URL : http://europepmc.org/articles/pmc3513333?pdf=render
One for all and all for one: the energetic benefits of huddling in endotherms, Biological Reviews, vol.85, issue.3, pp.545-569, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00558778
Generalized receptor law governs phototaxis in the phytoplankton Euglena gracilis, Proceedings of the National Academy of Sciences, vol.112, issue.22, pp.7045-7050, 2015. ,
In vivo calcium imaging of neural network function, Physiology, vol.22, issue.6, pp.358-365, 2007. ,
Robust persistent neural activity in a model integrator with multiple hysteretic dendrites per neuron, Cerebral cortex, vol.13, issue.11, pp.1185-1195, 2003. ,
Memory without feedback in a neural network, Neuron, vol.61, issue.4, pp.621-634, 2009. ,
Theoretical and computational neuroscience: Neural integrators: recurrent mechanisms and models, 2008. ,
Sulla struttura della sostanza grigia del cervello, Gazz. Med. Ital. (Lombardia), vol.33, pp.244-246, 1873. ,
Active sensation during orientation behavior in the Drosophila larva: more sense than luck, Current opinion in neurobiology, vol.22, issue.2, pp.208-215, 2012. ,
Optogenetic perturbations reveal the dynamics of an oculomotor integrator. Frontiers in neural circuits, 8. Gong, Biochemical and biophysical research communications, vol.2, issue.2, pp.395-399, 2009. ,
Über elementarakte mit zwei quantensprüngen, Annalen der Physik, vol.401, issue.3, pp.273-294, 1931. ,
Über die Wahrscheinlichkeit des Zusammenwirkens zweier Lichtquanten in einem Elementarakt, Naturwissenschaften, vol.17, issue.48, pp.932-932, 1929. ,
A circuit for navigation in Caenorhabditis elegans, Proceedings of the National Academy of Sciences of the United States of America, vol.102, pp.3184-3191, 2005. ,
, , 2010.
, High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision, Nature methods, vol.7, issue.5, pp.399-405
, , 2010.
, High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision, Nature methods, vol.7, issue.5, pp.399-405
Imaging calcium in neurons, Neuron, vol.73, issue.5, pp.862-885, 2012. ,
A: Neuronal network generating locomotor behavior in lamprey: circuitry, transmitters, membrane properties, and simulation, Annu Rev Neurosci, vol.14, pp.169-199, 1991. ,
Properties of the visible light phototaxis and UV avoidance behaviors in the larval zebrafish, Frontiers in behavioral neuroscience, p.10, 2016. ,
The structure and timescales of heat perception in larval zebrafish, Cell systems, vol.1, issue.5, pp.338-348, 2015. ,
A review of the adaptive significance and ecosystem consequences of zooplankton diel vertical migrations, Migrations and Dispersal of Marine Organisms, pp.163-170, 2003. ,
Normal and mutant thermotaxis in the nematode Caenorhabditis elegans, Proceedings of the National Academy of Sciences, vol.72, issue.10, pp.4061-4065, 1975. ,
Nonlinear optical microscopic examination of structure in polycrystalline ZnSe, Optics Communications, vol.12, issue.3, pp.318-322, 1974. ,
Deep tissue two-photon microscopy, Nature methods, vol.2, issue.12, pp.932-940, 2005. ,
Spatio-temporal recoding of rapid eye movement signals in the monkey paramedian pontine reticular formation (PPRF), vol.52, pp.105-120, 1983. ,
Imaging neuronal activity during zebrafish behavior with a genetically encoded calcium indicator, Journal of neurophysiology, vol.90, issue.6, pp.3986-3997, 2003. ,
Determination of threedimensional imaging properties of a light microscope system. Partial confocal behavior in epifluorescence microscopy, Biophysical journal, vol.57, issue.2, pp.325-333, 1990. ,
Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy, Neuron, vol.57, issue.5, pp.661-672, 2008. ,
Spinal projection neurons control turning behaviors in zebrafish, Current Biology, vol.23, issue.16, pp.1566-1573, 2013. ,
Tungsten microelectrode for recording from single units, Science, vol.125, issue.3247, pp.549-550, 1957. ,
Behavioral drive versus behavioral inertia in evolution: a null model approach, The American Naturalist, vol.161, issue.3, pp.357-366, 2003. ,
Even fluorescence excitation by multidirectional selective plane illumination microscopy (mSPIM), Optics letters, vol.32, issue.17, pp.2608-2610, 2007. ,
Selective plane illumination microscopy techniques in developmental biology, Development, vol.136, issue.12, pp.1963-1975, 2009. ,
Optical sectioning deep inside live embryos by selective plane illumination microscopy, Science, issue.5686, pp.1007-1009, 2004. ,
Parallel use of two behavioral mechanisms for chemotaxis in Caenorhabditis elegans, Journal of Neuroscience, vol.29, issue.17, pp.5370-5380, 2009. ,
Central pattern generators for locomotion control in animals and robots: a review, Neural networks, vol.21, issue.4, pp.642-653, 2008. ,
Saccade-related modulations of neuronal excitability support synchrony of visually elicited spikes, Cerebral Cortex, vol.21, issue.11, pp.2482-2497, 2011. ,
Dynamical systems in neuroscience, 2007. ,
Mechanism of phototaxis in marine zooplankton, Nature, vol.456, issue.7220, pp.395-399, 2008. ,
Evolution of phototaxis, Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol.364, pp.2795-2808, 1531. ,
Adaptive optics via pupil segmentation for high resolution imaging in biological tissues, Nature methods, vol.7, issue.2, pp.141-147, 2010. ,
A tale of two species: neural integration in zebrafish and monkeys, Neuroscience, vol.296, pp.80-91, 2015. ,
Oscillatory activity in the monkey hippocampus during visual exploration and memory formation, Proceedings of the National Academy of Sciences, vol.110, issue.32, pp.13144-13149, 2013. ,
Two-photon excitation in Ca F 2: Eu 2+, Physical review letters, vol.7, issue.6, p.229, 1961. ,
, Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond, vol.10, pp.70-86, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00850728
Inhibitory input to pause neurons from pontine burst neuron area in the cat, Neuroscience letters, vol.203, issue.3, pp.163-166, 1996. ,
,
Sensorimotor structure of Drosophila larva phototaxis, Proceedings of the National Academy of Sciences, vol.110, issue.40, pp.3868-3877, 2013. ,
Saccade-related, long-lead burst neurons in the monkey rostral pons, Journal of neurophysiology, vol.95, issue.2, pp.979-994, 2006. ,
Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes, Nature methods, vol.9, issue.2, pp.201-208, 2012. ,
Seeing the light: photobehavior in fruit fly larvae, Trends in neurosciences, vol.35, issue.2, pp.104-110, 2012. ,
Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy, Nature methods, vol.7, issue.8, pp.637-642, 2010. ,
Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy, science, vol.322, issue.5904, pp.1065-1069, 2008. ,
Functional role of plateau potentials in vertebrate motor neurons, Current opinion in neurobiology, vol.8, issue.6, pp.746-752, 1998. ,
The C. elegans thermosensory neuron AFD responds to warming, Current Biology, vol.14, issue.14, pp.1291-1295, 2004. ,
URL : https://hal.archives-ouvertes.fr/in2p3-00597159
V2a and V2b neurons are generated by the final divisions of pair-producing progenitors in the zebrafish spinal cord, Development, vol.135, issue.18, pp.3001-3005, 2008. ,
,
A structural and functional ground plan for neurons in the hindbrain of zebrafish, Proceedings of the National Academy of Sciences, vol.108, issue.3, pp.1164-1169, 2011. ,
Sensory determinants of behavioral dynamics in Drosophila thermotaxis, Proceedings of the National Academy of Sciences, vol.112, issue.2, pp.220-229, 2015. ,
Deep tissue multiphoton microscopy using longer wavelength excitation, Optics express, vol.17, issue.16, pp.13354-13364, 2009. ,
Retrospective and prospective coding for predicted reward in the sensory thalamus, Nature, issue.6846, p.546, 2001. ,
Model for a robust neural integrator, Nature neuroscience, vol.5, issue.8, p.775, 2002. ,
Temperature sensing by an olfactory neuron in a circuit controlling behavior of C. elegans, Science, vol.320, issue.5877, pp.803-807, 2008. ,
Two alternating motor programs drive navigation in Drosophila larva, PloS one, vol.6, issue.8, p.23180, 2011. ,
A spiking neuron model for binocular rivalry, Journal of computational neuroscience, vol.12, issue.1, pp.39-53, 2002. ,
Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup, Nature Reviews Neuroscience, vol.8, issue.12, pp.960-976, 2007. ,
A structural and genotypic scaffold underlying temporal integration, Journal of Neuroscience, vol.35, issue.20, pp.7903-7920, 2015. ,
Thermotaxis in golden hamster pups, Journal of Comparative and Physiological Psychology, vol.86, issue.3, p.458, 1974. ,
Fluorescence microscopy, Nature methods, vol.2, issue.12, pp.910-919, 2005. ,
Wide-field fluorescence sectioning with hybrid speckle and uniform-illumination microscopy, Optics letters, vol.33, issue.16, pp.1819-1821, 2008. ,
Confocal theta microscope with three objective lenses, Review of scientific instruments, vol.65, issue.11, pp.3367-3372, 1994. ,
Apparent dissociation between saccadic eye movements and the firing patterns of premotor neurons and motoneurons, Journal of neurophysiology, vol.82, issue.5, pp.2808-2811, 1999. ,
Nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate, Development, vol.126, issue.17, pp.3757-3767, 1999. ,
Identification and function of thermosensory neurons in Drosophila larvae, Nature neuroscience, vol.6, issue.3, pp.267-273, 2003. ,
, , 2008.
, Bilateral olfactory sensory input enhances chemotaxis behavior, Nature neuroscience, vol.11, issue.2, pp.187-199
Statistical measures of bacterial motility and chemotaxis, Journal of theoretical biology, vol.50, issue.2, pp.477-496, 1975. ,
Mechanisms of sensory transduction in the skin, Nature, vol.445, issue.7130, pp.858-865, 2007. ,
, , 2006.
, Sensorimotor control during isothermal tracking in Caenorhabditis elegans, Journal of experimental biology, vol.209, issue.23, pp.4652-4662
Navigational decision making in Drosophila thermotaxis, Journal of Neuroscience, vol.30, issue.12, pp.4261-4272, 2010. ,
Dynamic encoding of perception, memory, and movement in a C. elegans chemotaxis circuit, Neuron, vol.82, issue.5, pp.1115-1128, 2014. ,
Microscopie non linéaire de tissus biologiques: excitation multicouleur, faisceaux de Bessel, 2012. ,
Stimulated optical radiation in ruby, 1960. ,
Persistent neural activity: prevalence and mechanisms, Current opinion in neurobiology, vol.14, issue.6, pp.675-684, 2004. ,
Plasticity and tuning by visual feedback of the stability of a neural integrator, Proceedings of the National Academy of Sciences of the United States of America, vol.101, issue.20, pp.7739-7744, 2004. ,
Plasticity and tuning of the time course of analog persistent firing in a neural integrator, Proceedings of the National Academy of Sciences of the United States of America, vol.101, issue.20, pp.7745-7750, 2004. ,
From biophysics to models of network function, Annu Rev Neurosci, vol.21, pp.25-45, 1998. ,
Central pattern generators and the control of rhythmic movements, Current biology, vol.11, issue.23, pp.986-996, 2001. ,
Principles of rhythmic motor pattern generation, Physiological reviews, vol.76, issue.3, pp.687-717, 1996. ,
Principles of rhythmic motor pattern generation, Physiological reviews, vol.76, issue.3, pp.687-717, 1996. ,
Variability, compensation and homeostasis in neuron and network function, Nature reviews. Neuroscience, vol.7, issue.7, p.563, 2006. ,
Modulatory control of multiple task processing in the stomatogastric nervous system. Neurobiology of motor progamme selection, pp.3-19, 1992. ,
Fixational eye movements across vertebrates: comparative dynamics, physiology, and perception, Journal of Vision, vol.8, issue.14, pp.28-28, 2008. ,
Light and the Behavior of Organisms, 1911. ,
Kinetically resolved states of the Halobacterium halobium flagellar motor switch and modulation of the switch by sensory rhodopsin I, Journal of bacteriology, vol.169, issue.10, pp.4750-4758, 1987. ,
Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration, Science, vol.322, issue.5907, pp.1546-1550, 2008. ,
The stereotrode: a new technique for simultaneous isolation of several single units in the central nervous system from multiple unit records, Journal of neuroscience methods, vol.8, issue.4, pp.391-397, 1983. ,
Scanning light-sheet microscopy in the whole mouse brain with HiLo background rejection, Journal of biomedical optics, vol.15, issue.1, pp.16027-016027, 2010. ,
The range of attractant concentrations for bacterial chemotaxis and the threshold and size of response over this range, The Journal of general physiology, vol.62, issue.2, pp.203-223, 1973. ,
Bacterial chemotaxis: information processing, thermodynamics, and behavior. Current opinion in microbiology, vol.30, pp.8-15, 2016. ,
Confocal scanning microscope. Rapport technique, p.3, 1955. ,
, U.S. Patent, vol.467, issue.3, p.13, 1961.
Memoir on inventing the confocal scanning microscope, Scanning, vol.10, issue.4, pp.128-138, 1988. ,
Spatial gradients and multidimensional dynamics in a neural integrator circuit, Nature neuroscience, vol.14, issue.9, pp.1150-1159, 2011. ,
, , 2011.
, Regression-based identification of behavior-encoding neurons during largescale optical imaging of neural activity at cellular resolution, Journal of neurophysiology, vol.105, issue.2, pp.964-980
Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin, Nature, vol.388, issue.6645, pp.882-887, 1997. ,
Impaired thermosensation in mice lacking TRPV3, a heat and camphor sensor in the skin, Science, vol.307, issue.5714, pp.1468-1472, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00118759
Neural regulation of thermotaxis in Caenorhabditis elegans, Nature, vol.376, issue.6538, p.344, 1995. ,
Voltage oscillations in the barnacle giant muscle fiber, Biophysical journal, vol.35, issue.1, pp.193-213, 1981. ,
Behavioral neurobiology: how larval fish orient towards the light, Current Biology, vol.20, issue.4, pp.159-161, 2010. ,
Activation of the hypothalamic feeding centre upon visual prey detection. bioRxiv, p.78527, 2017. ,
A high signal-to-noise Ca2+ probe composed of a single green fluorescent protein, Nature biotechnology, vol.19, issue.2, pp.137-141, 2001. ,
Method of obtaining optical sectioning by using structured light in a conventional microscope, Optics letters, vol.22, issue.24, pp.1905-1907, 1997. ,
The evolution of eyes and visually guided behaviour, Philosophical Transactions of the Royal Society of London B: Biological Sciences, vol.364, pp.2833-2847, 1531. ,
Eye evolution and its functional basis. Visual neuroscience, vol.30, pp.5-20, 2013. ,
Photomovement of motile microorganisms, Photochemistry and Photobiology, vol.29, issue.2, pp.423-437, 1979. ,
,
Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy, Science, vol.329, issue.5994, pp.967-971, 2010. ,
Channeling of red and green cone inputs to the zebrafish optomotor response, Visual neuroscience, vol.22, pp.275-281, 2005. ,
The Cellular Organization of Zebrafish Visuomotor Circuits, Current Biology, vol.26, issue.9, pp.377-385, 2016. ,
Saccades and microsaccades during visual fixation, exploration, and search: foundations for a common saccadic generator, Journal of vision, vol.8, issue.14, pp.21-21, 2008. ,
Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy, Frontiers in neural circuits, p.7, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00904468
, Chemical calcium indicators. Methods, vol.46, issue.3, pp.143-151, 2008.
Handbook of biological confocal microscopy, Optical Engineering, vol.35, issue.9, pp.2765-2766, 1996. ,
Generating the walking gait: role of sensory feedback, Progress in brain research, vol.143, pp.123-129, 2004. ,
Motor pattern production in reciprocally inhibitory neurons exhibiting postinhibitory rebound, Science, vol.185, issue.4146, pp.181-183, 1974. ,
Rapid horizontal gaze movement in the monkey, Journal of Neurophysiology, vol.73, issue.4, pp.1632-1652, 1995. ,
A comparison of excitatory and inhibitory burst neuron activity during active head-unrestrained gaze shifts, In Soc Neurosci Abstr, vol.405, 2001. ,
Animal electricity and the birth of electrophysiology: the legacy of Luigi Galvani, Brain research bulletin, vol.46, issue.5, pp.381-407, 1998. ,
The fundamental role of pirouettes in Caenorhabditis elegans chemotaxis, Journal of Neuroscience, vol.19, issue.21, pp.9557-9569, 1999. ,
,
Simultaneous denoising, deconvolution, and demixing of calcium imaging data, Neuron, vol.89, issue.2, pp.285-299, 2016. ,
Mechanisms of scent-tracking in humans, Nature neuroscience, vol.10, issue.1, pp.27-29, 2007. ,
The neural basis of visual behaviors in the larval zebrafish, Current opinion in neurobiology, vol.19, issue.6, pp.644-647, 2009. ,
Wholebrain activity maps reveal stereotyped, distributed networks for visuomotor behavior, Neuron, vol.81, issue.6, pp.1328-1343, 2014. ,
A guide to light-sheet fluorescence microscopy for multiscale imaging, Nature Methods, vol.14, issue.4, pp.360-373, 2017. ,
The functional consequences of changes in the strength and duration of synaptic inputs to oscillatory neurons, Journal of Neuroscience, vol.23, issue.3, pp.943-954, 2003. ,
Zebrafish TRPA1 channels are required for chemosensation but not for thermosensation or mechanosensory hair cell function, Journal of Neuroscience, vol.28, issue.40, pp.10102-10110, 2008. ,
Model of the control of saccades by superior colliculus and cerebellum, Journal of Neurophysiology, vol.82, issue.2, pp.999-1018, 1999. ,
Simultaneous imaging of neural activity in three dimensions, Frontiers in neural circuits, vol.8, 2014. ,
Performance of different synchronization measures in real data: a case study on electroencephalographic signals, Physical Review E, vol.65, issue.4, p.41903, 2002. ,
Estructura de los centros nerviosos de las aves, Rev. Trim. Histol. Norm. Pat, vol.1, pp.1-10, 1888. ,
, , 2008.
, Thermotaxis is a robust mechanism for thermoregulation in Caenorhabditis elegans nematodes, Journal of Neuroscience, vol.28, issue.47, pp.12546-12557
Multiple modes of phase locking between sniffing and whisking during active exploration, Journal of Neuroscience, vol.33, issue.19, pp.8250-8256, 2013. ,
Phototaxis and the origin of visual eyes, Phil. Trans. R. Soc. B, vol.371, 1685. ,
Whole-brain activity mapping onto a zebrafish brain atlas, Nature methods, vol.12, issue.11, p.1039, 2015. ,
Behavioral spectral sensitivity of the zebrafish (Danio rerio), Vision research, vol.46, pp.2625-2635, 2006. ,
The mechanics of human saccadic eye movement, The Journal of physiology, vol.174, issue.2, pp.245-264, 1964. ,
Eye movements evoked by collicular stimulation in the alert monkey, Vision Res, vol.12, pp.1795-1808, 1972. ,
Oculomotor control signals. Basic mechanisms of ocular motility and their clinical implication, pp.337-374, 1975. ,
Integrating with neurons, Annual review of neuroscience, vol.12, issue.1, pp.33-45, 1989. ,
The role of the cerebellum in voluntary eye movements, Ann. Rev. Neurosci, vol.24, pp.981-1004, 2001. ,
Thermal navigation in larval zebrafish (Doctoral dissertation), 2013. ,
Demasking biological oscillators: properties and principles of entrainment exemplified by the Neurospora circadian clock, Proceedings of the National Academy of Sciences of the United States of America, vol.102, pp.7742-7747, 2005. ,
Visuomotor behaviors in larval zebrafish after GFP-guided laser ablation of the optic tectum, Journal of Neuroscience, vol.23, issue.9, pp.3726-3734, 2003. ,
The Drosophila ortholog of vertebrate TRPA1 regulates thermotaxis, Genes & development, vol.19, issue.4, pp.419-424, 2005. ,
Thermotaxis in Caenorhabditis elegans analyzed by measuring responses to defined thermal stimuli, Journal of Neuroscience, vol.22, issue.13, pp.5727-5733, 2002. ,
Evolution of thermoTRP ion channel homologs in vertebrates, Physiological genomics, vol.27, issue.3, pp.219-230, 2006. ,
Ultrafast random-access scanning in two-photon microscopy using acousto-optic deflectors, Journal of neuroscience methods, vol.154, issue.1, pp.161-174, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-00140134
Sensorimotor integration: locating locomotion in neural circuits, Current Biology, vol.15, issue.9, pp.341-343, 2005. ,
Light sheet fluorescence microscopy a review, Journal of Histochemistry & Cytochemistry, vol.59, issue.2, pp.129-138, 2011. ,
, , 1994.
, Sensorimotor transformation from light reception to phototactic behavior in Drosophila larvae (Diptera: Drosophilidae), Journal of insect behavior, vol.7, issue.4
Weak pairwise correlations imply strongly correlated network states in a neural population, Nature, vol.440, issue.7087, p.1007, 2006. ,
, , 2010.
, Optogenetic localization and genetic perturbation of saccade-generating neurons in zebrafish, Journal of Neuroscience, vol.30, issue.20, pp.7111-7120
Dynamics of active sensing and perceptual selection, Current opinion in neurobiology, vol.20, issue.2, pp.172-176, 2010. ,
The theory of weakly coupled oscillators, Phase response curves in neuroscience, pp.3-31, 2012. ,
In vivo imaging of germinal centres reveals a dynamic open structure, Nature, vol.446, issue.7131, p.83, 2007. ,
, , 1996.
, Anatomy and physiology of saccadic long-lead burst neurons recorded in the alert squirrel monkey. II. Pontine neurons, J Neurophysiol, vol.76, pp.353-370
A new local feedback model of the saccadic burst generator, Journal of Neurophysiology, vol.59, issue.5, pp.1455-1475, 1988. ,
The brainstem burst generator for saccadic eye movements: a modern synthesis, Exp Brain Res, vol.142, pp.439-462, 2002. ,
Adaptive modification of saccade size produces correlated changes in the discharges of fastigial nucleus neurons, Journal of Neurophysiology, vol.90, issue.2, pp.1011-1026, 2003. ,
Natural preference of zebrafish (Danio rerio) for a dark environment, Brazilian journal of medical and biological research, vol.32, issue.12, pp.1551-1553, 1999. ,
How the brain keeps the eyes still, Proceedings of the National Academy of Sciences, vol.93, pp.13339-13344, 1996. ,
Stability of the memory of eye position in a recurrent network of conductance-based model neurons, Neuron, vol.26, issue.1, pp.259-271, 2000. ,
Phototactic behaviour of the archaebacterial Natronobacterium pharaonis, FEBS letters, vol.340, issue.1-2, pp.114-116, 1994. ,
The dynamic clamp: artificial conductances in biological neurons, Trends Neurosci, vol.16, pp.389-94, 1993. ,
Mechanisms of oscillation in dynamic clamp constructed two-cell half-center circuits, Journal of neurophysiology, vol.76, issue.2, pp.867-883, 1996. ,
, Dynamics of Neural Activity During Chemotaxis in Caenorhabditis Elegans, 2015.
Resonant scanning optical microscope, Applied optics, vol.17, issue.18, pp.2879-2882, 1978. ,
DOI : 10.1364/ao.17.002879
The scanning harmonic optical microscope, IEEE Journal of Quantum electronics, vol.13, issue.9, pp.912-912, 1977. ,
Observations on the scratch-reflex in the spinal dog, The Journal of physiology, vol.34, issue.1-2, p.1, 1906. ,
Extraction, purification and properties of aequorin, a bioluminescent protein from the luminous hydromedusan, Aequorea. Journal of Cellular Physiology, vol.59, issue.3, pp.223-239, 1962. ,
Visualisation and determination of size of ultra microscopic particles, with special use of Goldrubin glasses, Annalen Der Physik, vol.10, issue.1, pp.1-39, 1902. ,
A genetically encoded optical probe of membrane voltage, Neuron, vol.19, issue.4, pp.735-741, 1997. ,
Mechanisms for oscillation and frequency control in reciprocally inhibitory model neural networks, Journal of computational neuroscience, vol.1, issue.1-2, pp.69-87, 1994. ,
PreBötzinger complex: a brainstem region that may generate respiratory rhythm in mammals, Science, vol.254, pp.726-729, 1991. ,
Evidence that the superior colliculus participates in the feedback control of saccadic eye movements, Journal of neurophysiology, vol.87, issue.2, pp.679-695, 2002. ,
The brainstem control of saccadic eye movements, Nature reviews. Neuroscience, vol.3, issue.12, p.952, 2002. ,
, The Neurobiology of Saccadic Eye Movements, pp.213-255, 1989.
60-fsec pulse generation from a self-mode-locked Ti: sapphire laser, Optics letters, vol.16, issue.1, pp.42-44, 1991. ,
The multitalented microbial sensory rhodopsins, Trends in microbiology, vol.14, issue.11, pp.480-487, 2006. ,
Longterm two-photon fluorescence imaging of mammalian embryos without compromising viability, Nature biotechnology, vol.17, issue.8, p.763, 1999. ,
Light-sheet fluorescence microscopy for quantitative biology, Nature methods, vol.12, issue.1, pp.23-28, 2015. ,
A new tool for the observation of embryos and other large specimens: confocal theta fluorescence microscopy, Journal of microscopy, vol.179, issue.1, pp.1-10, 1995. ,
Zebrafish models for translational neuroscience research: from tank to bedside, Trends in neurosciences, vol.37, issue.5, pp.264-278, 2014. ,
On the change of refrangibility of light, Philosophical Transactions of the Royal Society of London, vol.142, pp.463-562, 1852. ,
Anatomy and physiology of saccadic burst neurons in the alert squirrel monkey. I. Excitatory burst neurons, J. Comp. Neurol, vol.249, pp.337-357, 1986. ,
Functional asymmetry in C. elegans taste neurons and its computational role in chemotaxis, Nature, issue.7200, p.114, 2008. ,
Principles of two-photon excitation microscopy and its applications to neuroscience, Neuron, vol.50, issue.6, pp.823-839, 2006. ,
Direct measurement of coupling between dendritic spines and shafts, Science, issue.5262, p.716, 1996. ,
Role of the subesophageal zone in sensorimotor control of orientation in Drosophila larva, Current Biology, vol.25, issue.11, pp.1448-1460, 2015. ,
Behavioral thermoregulation in mammals: a review, Front Biosci, vol.16, pp.1428-1444, 2011. ,
Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators, Nature methods, vol.6, issue.12, pp.875-881, 2009. ,
Phototaxis and the evolution of isogamy and 'slight anisogamy'in marine green algae: insights from laboratory observations and numerical experiments, Botanical Journal of the Linnean Society, vol.144, issue.3, pp.321-327, 2004. ,
Highly inclined thin illumination enables clear single-molecule imaging in cells, Nature methods, vol.5, issue.2, pp.159-161, 2008. ,
Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy, Nature methods, vol.9, issue.7, pp.755-763, 2012. ,
Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex, Nature, vol.420, issue.6917, pp.788-794, 2002. ,
Deep and fast live imaging with two-photon scanned light-sheet microscopy, Nature methods, vol.8, issue.9, p.760, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00803780
New calcium indicators and buffers with high selectivity against magnesium and protons: design, synthesis, and properties of prototype structures, Biochemistry, vol.19, issue.11, pp.2396-2404, 1980. ,
Calcium homeostasis in intact lymphocytes: cytoplasmic free calcium monitored with a new, intracellularly trapped fluorescent indicator, The Journal of Cell Biology, vol.94, issue.2, pp.325-334, 1982. ,
The green fluorescent protein. Annual review of biochemistry, vol.67, pp.509-544, 1998. ,
Quantitative modeling of bacterial chemotaxis: signal amplification and accurate adaptation, Annual review of biophysics, vol.42, pp.337-359, 2013. ,
Miniaturization and defocus correction for objective-coupled planar illumination microscopy, Optics letters, vol.33, issue.20, pp.2302-2304, 2008. ,
Design considerations for a femtosecond pulse laser balancing self phase modulation, group velocity dispersion, saturable absorption, and saturable gain, IEEE journal of quantum electronics, vol.22, issue.1, pp.112-118, 1986. ,
Collicular ensemble coding of saccades based on vector summation, Neuroscience, vol.21, issue.2, pp.541-555, 1987. ,
Canonical Cortical Circuit Model Explains Rivalry, Intermittent Rivalry, and Rivalry Memory, PLoS computational biology, vol.12, issue.5, p.1004903, 2016. ,
Infotaxis' as a strategy for searching without gradients, Nature, issue.7126, pp.406-409, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00326807
Light-sheet functional imaging in fictively behaving zebrafish, Nature methods, 2014. ,
Spike inference from calcium imaging using sequential Monte Carlo methods, Biophysical journal, vol.97, issue.2, pp.636-655, 2009. ,
Fast nonnegative deconvolution for spike train inference from population calcium imaging, Journal of neurophysiology, vol.104, issue.6, pp.3691-3704, 2010. ,
Orthogonal-plane fluorescence optical sectioning: three dimensional imaging of macroscopic biological specimens, J Microsc, vol.170, pp.229-236, 1993. ,
Imaging the intact guinea pig tympanic bulla by orthogonalplane fluorescence optical sectioning microscopy, Hearing research, vol.171, issue.1, pp.119-128, 2002. ,
Three-dimensional reconstruction of the cochlea from two-dimensional images of optical sections, Computerized medical imaging and graphics, vol.19, issue.5, pp.377-384, 1995. ,
Making sense of it all: bacterial chemotaxis, Nature reviews. Molecular cell biology, vol.5, issue.12, p.1024, 2004. ,
Superior colliculus neurons mediate the dynamic characteristics of saccades, Journal of Neurophysiology, vol.66, issue.5, pp.1716-1737, 1991. ,
Effects of reversible inactivation of the primate mesencephalic reticular formation. I. Hypermetric goal-directed saccades, Journal of Neurophysiology, vol.83, issue.4, pp.2260-2284, 2000. ,
Alternating and synchronous rhythms in reciprocally inhibitory model neurons, Neural computation, vol.4, issue.1, pp.84-97, 1992. ,
Phototaxis and phototransduction mechanisms in the model system C. elegans (Doctoral dissertation, 2010. ,
Light-sensitive neurons and channels mediate phototaxis in C. elegans, Nature neuroscience, vol.11, issue.8, pp.916-922, 2008. ,
Biological rhythms and the behavior of populations of coupled oscillators, Journal of theoretical biology, vol.16, issue.1, pp.15-42, 1967. ,
Chlamydomonas phototaxis, Trends in cell biology, vol.3, issue.11, pp.403-408, 1993. ,
Whole-brain functional imaging with two-photon lightsheet microscopy, Nature methods, vol.12, issue.5, pp.379-380, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01168353
, , 2010.
, Light-avoidance-mediating photoreceptors tile the Drosophila larval body wall, Nature, vol.468, issue.7326, p.921
Dual-slit confocal light sheet microscopy for in vivo whole-brain imaging of zebrafish, Biomedical optics express, vol.6, issue.5, pp.1797-1811, 2015. ,
Spatial distribution of two-photonexcited fluorescence in scattering media, Applied optics, vol.38, issue.1, pp.224-229, 1999. ,
From the neuron doctrine to neural networks, Nature Reviews Neuroscience, vol.16, issue.8, pp.487-497, 2015. ,
Dendritic spines as basic functional units of neuronal integration, Nature, vol.375, issue.6533, p.682, 1995. ,
Phase contrast, a new method for the microscopic observation of transparent objects, Physica, vol.9, issue.7, pp.686-698, 1942. ,
, , 2017.
, Left habenula mediates light-preference behavior in zebrafish via an asymmetrical visual pathway, Neuron, vol.93, issue.4, pp.914-928
Phase response properties of half-center oscillators, Journal of computational neuroscience, vol.35, issue.1, pp.55-74, 2013. ,
Nonlinear magic: multiphoton microscopy in the biosciences, Nature biotechnology, vol.21, issue.11, p.1369, 2003. ,
, Blind sparse deconvolution for inferring spike trains from fluorescence recordings Jérôme Tubiana, 1, ? Sébastien Wolf, 2, 3 and Georges Debregeas, vol.2, p.3
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