M. Elias, K. Fauville-dufaux, and . Stoffels, The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes, BMC infectious diseases, vol.11, p.110, 2011.
URL : https://hal.archives-ouvertes.fr/pasteur-00670610

. Rastogi, First insight into the population structure of Mycobacterium tuberculosis in Saudi Arabia, J Clin Microbiol, vol.45, pp.2467-73, 2007.

I. O. Al-orainey, Diagnosis of latent tuberculosis: Can we do better?, Annals of Thoracic Medicine, vol.4, issue.1, p.5, 2009.
DOI : 10.4103/1817-1737.44778

B. R. Drucker and . Bloom, Transmission of tuberculosis in New York City--an analysis by DNA fingerprinting and conventional epidemiologic methods, New England Journal of Medicine, vol.330, pp.1710-1716, 1994.

D. N. Sy, J. Farrar, and M. Caws, Beijing genotype of Mycobacterium tuberculosis is significantly associated with high-level fluoroquinolone resistance in Vietnam, Antimicrobial agents and chemotherapy, vol.53, pp.4835-4839, 2009.

D. I. Andersson, Persistence of antibiotic resistant bacteria, Current Opinion in Microbiology, vol.6, issue.5, pp.452-456, 2003.
DOI : 10.1016/j.mib.2003.09.001

C. Arnold, Molecular evolution of Mycobacterium tuberculosis, Clinical Microbiology and Infection, vol.13, issue.2, pp.120-128, 2007.
DOI : 10.1111/j.1469-0691.2006.01637.x

R. Aronowitz, The Rise of Causal Concepts of Disease: Case Histories, Codell, 2004.

J. C. Avise, The history and purview of phylogeography: a personal reflection, Molecular Ecology, vol.7, issue.4, pp.371-379, 1998.
DOI : 10.1111/j.1558-5646.1996.tb04494.x

L. Eisenach, S. Knowles, M. D. Harvey, and . Cave, Patterns of tuberculosis transmission in Central Los Angeles, Jama, vol.278, pp.1159-1163, 1997.

P. Romero and . Horvath, CRISPR provides acquired resistance against viruses in prokaryotes, Science, vol.315, pp.1709-1712, 2007.

S. Basu, J. R. Andrews, E. M. Poolman, N. R. Gandhi, N. S. Shah et al., Prevention of nosocomial transmission of extensively drug-resistant tuberculosis in rural South African district hospitals: an epidemiological modelling study, The Lancet, vol.370, issue.9597, pp.1500-1507, 2007.
DOI : 10.1016/S0140-6736(07)61636-5

T. G. Benedek, The History of Gold Therapy for Tuberculosis, Journal of the History of Medicine and Allied Sciences, vol.59, issue.1, pp.50-89, 2004.
DOI : 10.1093/jhmas/jrg042

R. Bharti, R. Das, P. Sharma, K. Katoch, and A. Bhattacharya, MTCID: A database of genetic polymorphisms in clinical isolates of Mycobacterium??tuberculosis, Tuberculosis, vol.92, issue.2, pp.166-172, 2014.
DOI : 10.1016/j.tube.2011.12.001

D. Bhaya, M. Davison, and R. Barrangou, CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation, Annual Review of Genetics, vol.45, issue.1, pp.273-297, 2011.
DOI : 10.1146/annurev-genet-110410-132430

L. A. Bibb and G. F. Hatfull, Integration and excision of the Mycobacterium tuberculosis prophage-like element, ??Rv1, Molecular Microbiology, vol.184, issue.6, pp.1515-1526, 2002.
DOI : 10.1128/JB.184.7.1859-1864.2002

L. A. Bibb, M. I. Hancox, and G. F. Hatfull, Integration and excision by the large serine recombinase ??Rv1 integrase, Molecular Microbiology, vol.38, issue.6, pp.1896-1910, 2005.
DOI : 10.1046/j.1365-2958.2000.02142.x

D. Jones and . Alland, Evaluation of the analytical performance of the Xpert MTB/RIF assay, Journal of clinical microbiology, vol.48, pp.2495-2501, 2010.

M. Bocchino, B. Bellofiore, A. Matarese, D. Galati, and A. Sanduzzi, IFN-?? release assays in tuberculosis management in selected high-risk populations, Expert Review of Molecular Diagnostics, vol.146, issue.2, pp.165-177, 2009.
DOI : 10.1016/S1473-3099(07)70086-5

M. Hoelscher, T. Notomi, and T. Hase, Operational feasibility of using loop-mediated isothermal amplification for diagnosis of pulmonary tuberculosis in microscopy centers of developing countries, Journal of clinical microbiology, vol.45, pp.1936-1940, 2007.

A. Botelho, J. Perdigao, A. Canto, T. Albuquerque, N. Leal et al., Pre-Multidrug-Resistant Mycobacterium tuberculosis Beijing Strain Associated with Disseminated Tuberculosis in a Pet Dog, Journal of Clinical Microbiology, vol.52, issue.1, pp.354-360, 2014.
DOI : 10.1128/JCM.02800-13

Z. Moers, W. W. Yang, J. H. Stead, and . Bates, Interpretation of restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolates from a state with a large rural population, Journal of Infectious Diseases, vol.175, pp.1446-1452, 1997.

A. Sechi, P. Lazzarin, M. S. Lusso, and . Malnati, Rapid diagnosis of mycobacterial infections and quantitation of Mycobacterium tuberculosis load by two real-time calibrated PCR assays, Journal of clinical microbiology, vol.41, pp.4565-4572, 2003.

C. Garnier, G. Gutierrez, K. Hewinson, and . Kremer, A new evolutionary scenario for the Mycobacterium tuberculosis complex, Proceedings of the national academy of Sciences, vol.99, pp.3684-3689, 2002.

. Sola, Mycobacterium africanum genotyping using novel spacer oligonucleotides in the direct repeat locus, Journal of clinical microbiology, vol.42, pp.5053-5057, 2004.

K. Brudey, J. R. Driscoll, L. Rigouts, W. M. Prodinger, A. Gori et al., Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology, BMC Microbiology, vol.6, issue.1, p.23, 2006.
DOI : 10.1186/1471-2180-6-23

J. M. Bryant, S. R. Harris, J. Parkhill, R. Dawson, A. H. Diacon et al., Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study. The Lancet Respiratory Medicine, pp.786-792, 2013.

M. V. Burgos and A. S. Pym, Molecular epidemiology of tuberculosis, European Respiratory Journal, vol.20, issue.Supplement 36, pp.54-65, 2002.
DOI : 10.1183/09031936.02.00400702

T. N. Buu, M. N. Huyen, N. T. Lan, H. T. Quy, N. V. Hen et al., The Beijing genotype is associated with young age and multidrug-resistant tuberculosis in rural Vietnam, The International Journal of Tuberculosis and Lung Disease, vol.13, pp.900-906, 2009.

E. Cadot, P. Barbazan, and M. Boussinesq, Les déterminants géographiques de la transmission de l'onchocercose en zone de transition forêt-savane: l'exemple de deux villages du foyer du Mbam (région du Centre, Cameroun). Cahiers d'études et de recherches francophones, pp.429-435, 1999.

J. A. Caminero, G. Sotgiu, A. Zumla, and G. B. Migliori, Best drug treatment for multidrug-resistant and extensively drug-resistant tuberculosis. The Lancet infectious diseases, pp.621-629, 2010.

J. Camus, M. J. Pryor, C. Médigue, and S. T. Cole, Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv, Microbiology, vol.98, issue.10, pp.2967-2973, 2002.
DOI : 10.1073/pnas.221272198

N. A. Rist and . Melev, Advances in techniques of testing mycobacterial drug sensitivity, and the use of sensitivity tests in tuberculosis control programmes, Bulletin of the World Health Organization, vol.41, p.21, 1969.

D. A. Meissner, L. Mitchison, and . Ula, Mycobacteria: laboratory methods for testing drug sensitivity and resistance, Bulletin of the World Health Organization, vol.29, p.565, 1963.

M. Causse, P. Ruiz, J. B. Gutierrez, J. Zerolo, and M. Casal, Evaluation of new GenoType-MTBDRplus for detection of resistance in cultures and direct specimens of Mycobacterium tuberculosis, The International Journal of Tuberculosis and Lung Disease, vol.12, pp.1456-1460, 2008.

E. D. Chan and M. D. Iseman, Multidrug-resistant and extensively drug-resistant tuberculosis: a review, Current Opinion in Infectious Diseases, vol.21, issue.6, pp.587-595, 2008.
DOI : 10.1097/QCO.0b013e328319bce6

A. Eisenach, L. Ortega, I. Lopez-cubero, S. Fernandez-martin, and . Catalan, A longitudinal study of transmission of tuberculosis in a large prison population, American journal of respiratory and critical care medicine, vol.155, pp.719-725, 1997.

D. S. Shitikov, I. Y. Ischenko, E. S. Karpova, E. N. Kostryukova, and . Ilina, Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology, BMC genomics, vol.15, p.308, 2014.

P. Chin and R. Jou, A modified automated high-throughput mycobacterial interspersed repetitive unit method for genotyping Mycobacterium tuberculosis. Diagnostic microbiology and infectious disease, pp.325-327, 2005.

J. E. Clark-curtiss and S. E. Haydel, Pathogenesis, Annual Review of Microbiology, vol.57, issue.1, pp.517-549, 2003.
DOI : 10.1146/annurev.micro.57.030502.090903

T. Cohen and M. Murray, Modeling epidemics of multidrug-resistant M. tuberculosis of heterogeneous fitness, Nature Medicine, vol.341, issue.10, pp.1117-1121, 2004.
DOI : 10.1056/NEJM199910143411602

T. Cohen, B. Sommers, and M. Murray, The effect of drug resistance on the fitness of Mycobacterium tuberculosis, The Lancet Infectious Diseases, vol.3, issue.1, pp.13-21, 2003.
DOI : 10.1016/S1473-3099(03)00483-3

G. A. Colditz, T. F. Brewer, C. S. Berkey, M. E. Wilson, E. Burdick et al., Efficacy of BCG Vaccine in the Prevention of Tuberculosis, JAMA, vol.271, issue.9, pp.698-702, 1994.
DOI : 10.1001/jama.1994.03510330076038

S. Eiglmeier, C. E. Gas, and . Barry, Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence, Nature, vol.393, pp.537-544, 1998.

F. Coll, K. Mallard, M. D. Preston, S. Bentley, J. Parkhill et al., SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences, Bioinformatics, vol.18, issue.22, pp.2991-2993, 2012.
DOI : 10.1101/gr.074492.107

M. Viveiros, I. Portugal, F. Drobniewski, and S. Gagneux, PolyTB: a genomic variation map for Mycobacterium tuberculosis, Tuberculosis, vol.94, pp.346-354, 2014.

I. Comas, S. Homolka, S. Niemann, and S. Gagneux, Genotyping of Genetically Monomorphic Bacteria: DNA Sequencing in Mycobacterium tuberculosis Highlights the Limitations of Current Methodologies, PLoS ONE, vol.18, issue.11, p.7815, 2009.
DOI : 10.1371/journal.pone.0007815.s006

E. L. Corbett and M. Ravaglione, Global burden of Tuberculosis: past, present and future, 2004.

. Dye, The growing burden of tuberculosis: global trends and interactions with the HIV epidemic, Archives of internal medicine, vol.163, pp.1009-1021, 2003.

V. G. Coronado, C. M. Beck-sague, M. D. Hutton, B. J. Davis, P. Nicholas et al., Transmission of Multidrug-Resistant Mycobacterium tuberculosis among Persons with Human Immunodeficiency Virus Infection in an Urban Hospital: Epidemiologic and Restriction Fragment Length Polymorphism Analysis, Journal of Infectious Diseases, vol.168, issue.4, pp.1052-1055, 1993.
DOI : 10.1093/infdis/168.4.1052

L. Couceiro, P. Santana, and C. Nunes, Pulmonary tuberculosis and risk factors in Portugal: a spatial analysis, The International Journal of Tuberculosis and Lung Disease, vol.15, issue.11, pp.1445-1455, 2011.
DOI : 10.5588/ijtld.10.0302

L. S. Cowan, L. Diem, M. C. Brake, and J. T. Crawford, Transfer of a Mycobacterium tuberculosis Genotyping Method, Spoligotyping, from a Reverse Line-Blot Hybridization, Membrane-Based Assay to the Luminex Multianalyte Profiling System, Journal of Clinical Microbiology, vol.42, issue.1, pp.474-477, 2004.
DOI : 10.1128/JCM.42.1.474-477.2004

P. S. Craig, P. Giraudoux, D. Shi, B. Bartholomot, G. Barnish et al., An epidemiological and ecological study of human alveolar echinococcosis transmission in south Gansu, China, Acta Tropica, vol.77, issue.2, pp.167-177, 2000.
DOI : 10.1016/S0001-706X(00)00134-0
URL : https://hal.archives-ouvertes.fr/hal-00342483

M. Ardila, K. Ghouri, R. C. Kim, A. Patel, and . Miller, Rapid diagnosis of pulmonary tuberculosis by using Roche AMPLICOR Mycobacterium tuberculosis PCR test, Journal of Clinical Microbiology, vol.33, pp.1832-1834, 1995.

T. Heersma, T. Lillebaek, N. Quitugua, and . Rastogi, Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature [The Language of Our Science], The International Journal of Tuberculosis and Lung Disease, vol.5, pp.216-219, 2001.

P. E. Dale, S. A. Ritchie, B. M. Territo, C. D. Morris, A. Muhar et al., An overview of remote sensing and GIS for surveillance of mosquito vector habitats and risk assessment, Journal of vector ecology: journal of the Society for Vector Ecology, vol.23, pp.54-61, 1998.

T. M. Daniel, Robert Koch and the pathogenesis of tuberculosis [Founders of Our Knowledge], The International Journal of Tuberculosis and Lung Disease, vol.9, pp.1181-1182, 2005.

T. M. Daniel, The history of tuberculosis, Respiratory Medicine, vol.100, issue.11, pp.1862-1870, 2006.
DOI : 10.1016/j.rmed.2006.08.006

H. L. David, Probability distribution of drug-resistant mutants in unselected populations of Mycobacterium tuberculosis, Applied microbiology, vol.20, pp.810-814, 1970.

H. L. David, Resistance to D-cycloserine in the tubercle bacilli: mutation rate and transport of alanine in parental cells and drug-resistant mutants, Applied microbiology, vol.21, pp.888-892, 1971.

C. Demay, B. Liens, T. Burguiere, V. Hill, D. Couvin et al., SITVITWEB ??? A publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology, Infection, Genetics and Evolution, vol.12, issue.4, pp.755-66, 2012.
DOI : 10.1016/j.meegid.2012.02.004
URL : https://hal.archives-ouvertes.fr/pasteur-00691750

J. D. Domingues, L. Ducasse, and A. Peixoto, Exploring the mechanisms of granuloma formation in vivo to prevent dissemination of a respiratory Mycobacterium tuberculosis infection: A live imaging approach, 2016.

J. Dossou-yovo, J. M. Doannio, S. Diarrassouba, and G. Chauvancy, Impact d'aménagements de rizières sur la transmission du paludisme dans la ville de Bouaké, Côte d'Ivoire, Bull Soc Pathol Exot, vol.91, pp.327-360, 1998.

A. Zakharova, I. Melentyev, and . Fedorin, Drug-resistant tuberculosis, clinical virulence, and the dominance of the Beijing strain family in Russia, Jama, vol.293, pp.2726-2731, 2005.

G. Dutau, [The history of tuberculosis] Archives de pediatrie: organe officiel de la Societe francaise de pediatrie, pp.88-95, 2005.

C. Dye, S. Scheele, P. Dolin, V. Pathania, and M. C. Raviglione, Global Burden of Tuberculosis<SUBTITLE>Estimated Incidence, Prevalence, and Mortality by Country</SUBTITLE>, JAMA, vol.282, issue.7, pp.677-686, 1999.
DOI : 10.1001/jama.282.7.677

C. Dye, C. J. Watt, D. M. Bleed, S. M. Hosseini, and M. C. Raviglione, Evolution of Tuberculosis Control and Prospects for Reducing Tuberculosis Incidence, Prevalence, and Deaths Globally, JAMA, vol.293, issue.22, pp.2767-2775, 2005.
DOI : 10.1001/jama.293.22.2767

A. Faustini, A. J. Hall, and C. A. Perucci, Risk factors for multidrug resistant tuberculosis in Europe: a systematic review, Thorax, vol.61, issue.2, pp.158-163, 2006.
DOI : 10.1136/thx.2005.045963

N. Razanamparany and . Rastogi, A study of spoligotyping-defined Mycobacterium tuberculosis clades in relation to the origin of peopling and the demographic history in Madagascar, Infect Genet Evol, vol.5, pp.340-348, 2005.

I. Filliol, S. Ferdinand, L. Negroni, C. Sola, and N. Rastogi, Molecular typing of Mycobacterium tuberculosis based on variable number of tandem DNA repeats used alone and in association with spoligotyping, Journal of clinical microbiology, vol.38, pp.2520-2524, 2000.

I. Filliol, J. R. Driscoll, D. Van-soolingen, B. N. Kreiswirth, K. Kremer et al., Global Distribution of Mycobacterium tuberculosis Spoligotypes, Emerging Infectious Diseases, vol.8, issue.11, pp.1347-1350, 2002.
DOI : 10.3201/eid0811.020125

I. Filliol, J. R. Driscoll, D. Van-soolingen, B. N. Kreiswirth, K. Kremer et al., Snapshot of Moving and Expanding Clones of Mycobacterium tuberculosis and Their Global Distribution Assessed by Spoligotyping in an International Study, Journal of Clinical Microbiology, vol.41, issue.5, pp.1963-1970, 2003.
DOI : 10.1128/JCM.41.5.1963-1970.2003

I. Filliol, A. S. Motiwala, M. Cavatore, W. Qi, M. H. Hazben et al., Global Phylogeny of Mycobacterium tuberculosis Based on Single Nucleotide Polymorphism (SNP) Analysis: Insights into Tuberculosis Evolution, Phylogenetic Accuracy of Other DNA Fingerprinting Systems, and Recommendations for a Minimal Standard SNP Set, Journal of Bacteriology, vol.188, issue.2, pp.759-772, 2006.
DOI : 10.1128/JB.188.2.759-772.2006

R. Deboy, M. Dodson, D. Gwinn, and . Haft, Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains, Journal of bacteriology, vol.184, pp.5479-5490, 2002.

J. L. Flynn and J. Chan, Tuberculosis: Latency and Reactivation, Infection and Immunity, vol.69, issue.7, pp.4195-4201, 2001.
DOI : 10.1128/IAI.69.7.4195-4201.2001
URL : http://iai.asm.org/content/69/7/4195.full.pdf

S. Gagneux and P. M. Small, Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development, The Lancet Infectious Diseases, vol.7, issue.5, pp.328-337, 2007.
DOI : 10.1016/S1473-3099(07)70108-1

S. Nicol, K. Niemann, M. C. Kremer, and . Gutierrez, Variable host-pathogen compatibility in Mycobacterium tuberculosis, Proceedings of the National academy of Sciences of the United States of America, vol.103, pp.2869-2873, 2006.

J. E. Galagan, Genomic insights into tuberculosis, Nature Reviews Genetics, vol.31, issue.5, p.307, 2014.
DOI : 10.1016/S2213-2600(13)70231-5

Y. Moore, R. Zhao, and . Holt, Whole-genome sequencing and social-network analysis of a tuberculosis outbreak, New England Journal of Medicine, vol.364, pp.730-739, 2011.

T. Garnier, K. Eiglmeier, J. Camus, N. Medina, H. Mansoor et al., The complete genome sequence of Mycobacterium bovis, Proceedings of the National Academy of Sciences, pp.7877-7882, 2003.
DOI : 10.1073/pnas.95.7.3943

S. H. Gillespie, Antibiotic resistance in the absence of selective pressure, International Journal of Antimicrobial Agents, vol.17, issue.3, pp.171-176, 2001.
DOI : 10.1016/S0924-8579(00)00340-X

M. K. Gomgnimbou, E. Abadia, J. Zhang, G. Refrégier, S. Panaiotov et al., "Spoligoriftyping," a Dual-Priming-Oligonucleotide-Based Direct-Hybridization Assay for Tuberculosis Control with a Multianalyte Microbead-Based Hybridization System, Journal of Clinical Microbiology, vol.50, issue.10, pp.3172-3179, 2012.
DOI : 10.1128/JCM.00976-12
URL : https://hal.archives-ouvertes.fr/hal-00763191

M. K. Gomgnimbou, I. Hernàndez-neuta, S. Panaiotov, E. Bachiyska, J. C. Palomino et al., Tuberculosis-Spoligo-Rifampin-Isoniazid Typing: an All-in-One Assay Technique for Surveillance and Control of Multidrug-Resistant Tuberculosis on Luminex Devices, Journal of Clinical Microbiology, vol.51, issue.11, pp.3527-3534, 2013.
DOI : 10.1128/JCM.01523-13

S. V. Gordon, B. Heym, J. Parkhill, B. Barrell, and S. T. Cole, New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv, Microbiology, vol.145, issue.4, pp.881-892, 1999.
DOI : 10.1099/13500872-145-4-881

V. Guernier, Combiner analyse spatiale et épidémiologie pour l'aide à la décision dans la lutte contre la tuberculose en Guyane française, 2006.

M. M. Gutacker, H. Mathema, E. Soini, B. N. Shashkina, E. A. Kreiswirth et al., Strains from 4 Geographic Sites, The Journal of Infectious Diseases, vol.193, issue.1, pp.121-128, 2006.
DOI : 10.1086/498574

D. H. Haft, J. Selengut, E. F. Mongodin, and K. E. Nelson, A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes, PLoS Computational Biology, vol.21, issue.6, p.60, 2005.
DOI : 1367-4803(2005)021[0293:GPASFT]2.0.CO;2

M. Hanekom, N. C. Gey-van-pittius, C. Mcevoy, T. C. Victor, P. D. Van-helden et al., Mycobacterium tuberculosis Beijing genotype: A template for success, Tuberculosis, vol.91, issue.6, pp.510-533, 2011.
DOI : 10.1016/j.tube.2011.07.005

R. M. Harshey and T. Ramakrishnan, Rate of ribonucleic acid chain growth in Mycobacterium tuberculosis H37Rv, Journal of bacteriology, vol.129, pp.616-622, 1977.

M. H. Hazbõn, M. B. Del-valle, M. I. Guerrero, M. Varma-basil, I. Filliol et al., Role of embB Codon 306 Mutations in Mycobacterium tuberculosis Revisited: a Novel Association with Broad Drug Resistance and IS6110 Clustering Rather than Ethambutol Resistance, Antimicrobial Agents and Chemotherapy, vol.49, issue.9, pp.3794-3802, 2005.
DOI : 10.1128/AAC.49.9.3794-3802.2005

P. Rodgers and . Banada, Rapid detection of Mycobacterium tuberculosis and rifampin resistance by use of on-demand, near-patient technology, Journal of clinical microbiology, vol.48, pp.229-237, 2010.

D. Hillemann, S. Rüsch-gerdes, and E. Richter, Application of the Genotype- MTBDR assay directly on sputum specimens, Technical Note]. The International Journal of Tuberculosis and Lung Disease, vol.10, pp.1057-1059, 2006.

D. Hillemann, S. Rã¼sch-gerdes, and E. Richter, Evaluation of the GenoType MTBDRplus Assay for Rifampin and Isoniazid Susceptibility Testing of Mycobacterium tuberculosis Strains and Clinical Specimens, Journal of Clinical Microbiology, vol.45, issue.8, pp.2635-2640, 2007.
DOI : 10.1128/JCM.00521-07

D. Hillemann, S. Rüsch-gerdes, and E. Richter, Feasibility of the GenoType MTBDRsl Assay for Fluoroquinolone, Amikacin-Capreomycin, and Ethambutol Resistance Testing of Mycobacterium tuberculosis Strains and Clinical Specimens, Journal of Clinical Microbiology, vol.47, issue.6, pp.1767-1772, 2009.
DOI : 10.1128/JCM.00081-09

A. E. Hirsh, A. G. Tsolaki, K. Deriemer, M. W. Feldman, and P. M. Small, Stable association between strains of Mycobacterium tuberculosis and their human host populations, Proceedings of the National Academy of Sciences, vol.158, issue.6, 2004.
DOI : 10.1164/ajrccm.158.6.9804029

P. C. Hopewell and R. M. Jasmer, Overview of Clinical Tuberculosis, Tuberculosis and the tubercle bacillus, pp.15-31, 2005.
DOI : 10.1128/9781555818357.ch3

P. R. Hunter, Reproducibility and indices of discriminatory power of microbial typing methods, Journal of Clinical Microbiology, vol.28, pp.1903-1905, 1990.

M. D. Iseman and L. A. Madsen, Drug-resistant tuberculosis, Postgraduate Medicine, vol.137, issue.4, pp.341-353, 1989.
DOI : 10.1001/archinte.1987.00370110165026

N. Watanabe and . Ishikawa, Detection of Tuberculosis Infection Hotspots Using Activity Spaces Based Spatial Approach in an Urban Tokyo, PloS one, vol.10, p.138831, 2003.

J. Y. Kim, M. J. Ferraro, and J. A. Branda, False-Negative Results Obtained with the Gen-Probe Amplified Mycobacterium tuberculosis Direct Test Caused by Unrecognized Inhibition of the Amplification Reaction, Journal of Clinical Microbiology, vol.47, issue.9, pp.2995-2997, 2009.
DOI : 10.1128/JCM.00966-09

T. Kistemann, A. Munzinger, and F. Dangendorf, Spatial patterns of tuberculosis incidence in Cologne (Germany), Social Science & Medicine, vol.55, issue.1, pp.7-19, 2002.
DOI : 10.1016/S0277-9536(01)00216-7

D. S. Korbel, B. E. Schneider, and U. E. Schaible, Innate immunity in tuberculosis: myths and truth, Microbes and Infection, vol.10, issue.9, pp.995-1004, 2008.
DOI : 10.1016/j.micinf.2008.07.039

A. Koul, E. Arnoult, N. Lounis, J. Guillemont, and K. Andries, The challenge of new drug discovery for tuberculosis, Nature, vol.64, issue.7331, pp.483-490, 2011.
DOI : 10.1146/annurev.micro.112408.134043

P. Skuce, A. G. Supply, D. Van-der-zanden, and . Van-soolingen, Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strains, Journal of clinical microbiology, vol.43, pp.5628-5638, 2005.

. Palomino, Tuberculosis 2007 -From Basic Science to Patient Care

R. Krivinka, J. Drapela, A. Kubik, D. Dankova, J. Krivanek et al., Epidemiological and clinical study of tuberculosis in the district of Kolin, Czechoslovakia. Second report Bulletin of the World Health Organization, vol.51, pp.59-69, 1965.

M. Kulldorff, A spatial scan statistic Communications in statistics : Theory and Methods, pp.1481-1496, 1997.

M. Kulldorff and N. Nagarwalla, Spatial disease clusters: Detection and inference, Statistics in Medicine, vol.132, issue.8, pp.799-810, 1995.
DOI : 10.2307/2982977

L. Hadj, M. , A. Fissah, and S. Nafti, Les nouveaux tests de diagnostic de la tuberculose, Revue des maladies respiratoires, vol.23, pp.85-87, 2006.

A. Lalvani, Diagnosing Tuberculosis Infection in the 21st Century, Chest, vol.131, issue.6, pp.1898-1906, 2007.
DOI : 10.1378/chest.06-2471

P. Lesprit and J. M. Molina, La co-infection VIH-tuberculose : causes et cons??quences, M??decine et Maladies Infectieuses, vol.26, issue.11, pp.918-921, 1996.
DOI : 10.1016/S0399-077X(96)80197-1

P. Lobue and D. Menzies, Treatment of latent tuberculosis infection: An update, Respirology, vol.180, issue.4, pp.603-622, 2010.
DOI : 10.1093/clinids/24.6.1264

C. Locht, A common vaccination strategy to solve unsolved problems of tuberculosis and pertussis?, Microbes and Infection, vol.10, issue.9, pp.1051-1056, 2008.
DOI : 10.1016/j.micinf.2008.07.008

K. Lönnroth, E. Jaramillo, B. G. Williams, C. Dye, and M. Raviglione, Drivers of tuberculosis epidemics: The role of risk factors and social determinants, Social Science & Medicine, vol.68, issue.12, pp.2240-2246, 2009.
DOI : 10.1016/j.socscimed.2009.03.041

G. G. Mahairas, P. J. Sabo, M. J. Hickey, D. C. Singh, and C. K. Stover, Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis., Journal of Bacteriology, vol.178, issue.5, 1996.
DOI : 10.1128/jb.178.5.1274-1282.1996

S. Maisnier-patin and D. I. Andersson, Adaptation to the deleterious effects of antimicrobial drug resistance mutations by compensatory evolution, Research in Microbiology, vol.155, issue.5, pp.360-369, 2004.
DOI : 10.1016/j.resmic.2004.01.019

R. H. Major, Classic Descriptions of Disease Charles C Thomas, 1945.

N. Warren, J. R. French, and . Glynn, Molecular detection of mixed infections of Mycobacterium tuberculosis strains in sputum samples from patients in Karonga District, 2010.

Y. C. Manabe and W. R. Bishai, Latent Mycobacterium tuberculosis???persistence, patience and winning by waiting, Nature Medicine, vol.341, issue.12, p.1327, 2000.
DOI : 10.1056/NEJM199910143411602

L. A. Marraffini and E. J. Sontheimer, Self versus non-self discrimination during CRISPR RNA-directed immunity, Nature, vol.35, issue.7280, p.568, 2010.
DOI : 10.1128/AAC.39.6.1272

L. A. Marraffini and E. J. Sontheimer, CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea, Nature Reviews Genetics, vol.75, issue.3, pp.181-190, 2010.
DOI : 10.1128/jb.178.16.4975-4983.1996

B. Mathema, N. E. Kurepina, P. J. Bifani, and B. N. Kreiswirth, Molecular Epidemiology of Tuberculosis: Current Insights, Clinical Microbiology Reviews, vol.19, issue.4, pp.658-685, 2006.
DOI : 10.1128/CMR.00061-05

V. Mathys, Contribution à la compréhension des mécanismes moléculaires de résistance de Mycobacterium tuberculosis aux agents anti-tuberculeux, 2010.

E. Mazars, S. Lesjean, A. Banuls, M. Gilbert, V. Vincent et al., High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology, Proceedings of the national academy of Sciences, pp.1901-1906, 2001.
DOI : 10.1146/annurev.genet.33.1.449

K. P. Burgess, S. E. Singh, and . Weis, Using GIS technology to identify areas of tuberculosis transmission and incidence, Int J Health Geogr, vol.3, p.23, 2004.

P. A. Moran, NOTES ON CONTINUOUS STOCHASTIC PHENOMENA, Biometrika, vol.37, issue.1-2, pp.17-23, 1950.
DOI : 10.1093/biomet/37.1-2.17

S. Moyo, S. Verver, H. Mahomed, A. Hawkridge, M. Kibel et al., Age-related tuberculosis incidence and severity in children under 5 years of age in Cape Town, The International Journal of Tuberculosis and Lung Disease, vol.14, pp.149-154, 2010.

Z. Munch, S. W. Van-lill, C. N. Booysen, H. L. Zietsman, D. A. Enarson et al., Tuberculosis transmission patterns in a high-incidence area: a spatial analysis, Int J Tuberc Lung Dis, vol.7, pp.271-278, 2003.

C. J. Murray and J. A. Salomon, Modeling the impact of global tuberculosis control strategies, Proceedings of the National Academy of Sciences, vol.84, issue.2, pp.13881-13886, 1998.
DOI : 10.1016/0025-5564(87)90044-7

B. Otlu, R. Durmaz, S. Gunal, C. Sola, T. Zozio et al., Beijing/W and major spoligotype families of Mycobacterium tuberculosis strains isolated from tuberculosis patients in Eastern Turkey, New Microbiol, vol.32, pp.255-63, 2009.
URL : https://hal.archives-ouvertes.fr/pasteur-00694588

. Rã¼sch-gerdes, Comparison of the Mycobacteria Growth Indicator Tube (MGIT) with radiometric and solid culture for recovery of acid-fast bacilli, Journal of Clinical Microbiology, vol.35, pp.364-368, 1997.

R. V. Ranjalahy, F. Randremanana, and . Rakotomanana, Spatial Analysis of Pulmonary Tuberculosis in Antananarivo Madagascar: Tuberculosis-Related Knowledge, Attitude and Practice, PloS one, vol.9, p.110471, 2014.

S. Ramaswamy and J. M. Musser, Molecular genetic basis of antimicrobial agent resistance inMycobacterium tuberculosis: 1998 update, Tubercle and Lung Disease, vol.79, issue.1, pp.3-29, 1998.
DOI : 10.1054/tuld.1998.0002

. Chanteau, A combination of two genetic markers is sufficient for restriction fragment length polymorphism typing of Mycobacterium tuberculosis complex in areas with a high incidence of tuberculosis, Journal of clinical microbiology, vol.39, pp.1530-1535, 2001.

V. Rasolofo-razanamparany, D. Ménard, M. Ratsitorahina, G. Aurégan, B. Gicquel et al., Transmission of tuberculosis in the prison of Antananarivo (Madagascar), Research in Microbiology, vol.151, issue.9, pp.785-795, 2000.
DOI : 10.1016/S0923-2508(00)01144-X

B. Ramarokoto, S. Gicquel, and . Chanteau, [Genetic polymorphism of M. tuberculosis strains in Antananaviro]. Archives de l, Institut Pasteur de Madagascar, vol.62, pp.59-64, 1994.

N. Rastogi, E. Legrand, and C. Sola, The mycobacteria: an introduction to nomenclature and pathogenesis, Revue Scientifique et Technique de l'OIE, vol.20, issue.1, pp.21-54, 2001.
DOI : 10.20506/rst.20.1.1265

W. C. Reeves, J. L. Hardy, W. K. Reisen, and M. M. Milby, Potential Effect of Global Warming on Mosquito-Borne Arboviruses, Journal of Medical Entomology, vol.31, issue.3, pp.323-332, 1994.
DOI : 10.1093/jmedent/31.3.323

F. Aktas, M. K. Cömert, S. Gomgnimbou, and . Panaiotov, Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor, Infection, genetics and evolution, vol.45, pp.461-473, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01439404

F. K. Ribeiro, W. Pan, A. Bertolde, S. A. Vinhas, R. L. Peres et al., Genotypic and spatial analysis of Mycobacterium tuberculosis transmission in a high-incidence urban setting, Clinical Infectious Diseases, p.365, 2015.

L. Richeldi, An update on the diagnosis of tuberculosis infection American journal of respiratory and critical care medicine, pp.736-742, 2006.

C. Saltini, Chemotherapy and diagnosis of tuberculosis, Respiratory Medicine, vol.100, issue.12, pp.2085-2097, 2006.
DOI : 10.1016/j.rmed.2006.09.015

P. Sander, B. Springer, T. Prammananan, A. Sturmfels, M. Kappler et al., Fitness Cost of Chromosomal Drug Resistance-Conferring Mutations, Antimicrobial Agents and Chemotherapy, vol.46, issue.5, 2002.
DOI : 10.1128/AAC.46.5.1204-1211.2002

A. C. Schurch, K. Kremer, O. Daviena, A. Kiers, M. J. Boeree et al., High-Resolution Typing by Integration of Genome Sequencing Data in a Large Tuberculosis Cluster, Journal of Clinical Microbiology, vol.48, issue.9, pp.3403-3406, 2010.
DOI : 10.1128/JCM.00370-10

. Blackburn, Spatiotemporal Clustering of Mycobacterium tuberculosis Complex Genotypes in Florida: Genetic Diversity Segregated by Country of Birth, PloS one, vol.11, p.153575, 2016.

N. Shetty, M. Shemko, M. Vaz, and G. D. Souza, An epidemiological evaluation of risk factors for tuberculosis in South India: a matched case control study, The International Journal of Tuberculosis and Lung Disease, vol.10, pp.80-86, 2006.

T. M. Shinnick and R. C. Good, Mycobacterial taxonomy, European Journal of Clinical Microbiology & Infectious Diseases, vol.136, issue.11, pp.884-901, 1994.
DOI : 10.1099/00221287-136-9-1915

E. Mahto and . Richter, Direct drug susceptibility testing of Mycobacterium tuberculosis for rapid detection of multidrug resistance using the Bactec MGIT 960 system: a multicenter study, Journal of clinical microbiology, vol.50, pp.435-440, 2012.

A. D. Abi-zaid, P. N. Rocha, and . Suffys, Identification of Mycobacterium tuberculosis complex based on amplification and sequencing of the oxyR pseudogene from stored, 2011.

. Palomino, Tuberculosis 2007 -From Basic Science to Patient Care

C. L. Schecter, G. K. Daley, and . Schoolnik, The Epidemiology of Tuberculosis in San Francisco-A Population-Based Study Using Conventional and Molecular Methods, New England Journal of Medicine, vol.330, pp.1703-1709, 1994.

I. Smith, Mycobacterium tuberculosis Pathogenesis and Molecular Determinants of Virulence, Clinical Microbiology Reviews, vol.16, issue.3, pp.463-496, 2003.
DOI : 10.1128/CMR.16.3.463-496.2003

N. H. Smith, R. G. Hewinson, K. Kremer, R. Brosch, and S. V. Gordon, Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis, Nature Reviews Microbiology, vol.12, issue.7, pp.537-544, 2009.
DOI : 10.1097/01.aids.0000185991.54595.41

O. Thanakijcharoen, P. Karnkawinpong, and . Palittapongarnpim, Polymorphism of variable-number tandem repeats at multiple locus in Mycobacterium tuberculosis, Journal of clinical microbiology, vol.43, pp.5034-5043, 2005.

A. T. Society, Diagnostic standards and classification of tuberculosis in adults and children, Am J Respir Crit Care Med, vol.161, pp.1376-1395, 2000.

C. Sola, I. Filliol, E. Legrand, and N. Rastogi, [Recent developments of spoligotyping as applied to the study of epidemiology, biodiversity and molecular phylogeny of the Mycobacterium tuberculosis complex], Pathologie-biologie, vol.48, pp.921-932, 2000.

A. Somoskovi, J. Dormandy, D. Mitsani, J. Rivenburg, and M. Salfinger, Use of Smear-Positive Samples To Assess the PCR-Based Genotype MTBDR Assay for Rapid, Direct Detection of the Mycobacterium tuberculosis Complex as Well as Its Resistance to Isoniazid and Rifampin, Journal of Clinical Microbiology, vol.44, issue.12, pp.4459-4463, 2006.
DOI : 10.1128/JCM.01506-06

. Martin, IS6110 mediates increased transcription of the phoP virulence gene in a multidrug-resistant clinical isolate responsible for tuberculosis outbreaks, Journal of clinical microbiology, vol.42, pp.212-219, 2004.

M. K. Spigelman, New Tuberculosis Therapeutics: A Growing Pipeline, The Journal of Infectious Diseases, vol.2, issue.s1, pp.28-34, 2007.
DOI : 10.2741/1293

J. M. Whittam and . Musser, Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination, Proceedings of the National Academy of Sciences, vol.94, pp.9869-9874, 1997.

W. W. Stead, Pathogenesis of a first episode of chronic pulmonary tuberculosis in man: recrudescence of residuals of the primary infection or exogenous reinfection?, American Review of Respiratory Disease, vol.95, pp.729-745, 1967.

D. Locht and . Van-soolingen, Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis, J Clin Microbiol, vol.44, pp.4498-510, 2006.

N. Suresh, J. Arora, H. Pant, T. Rana, and U. B. Singh, Spoligotyping of Mycobacterium tuberculosis DNA from Archival Ziehl???Neelsen-stained sputum smears, Journal of Microbiological Methods, vol.68, issue.2, 2007.
DOI : 10.1016/j.mimet.2006.09.001

H. E. Takiff and O. Feo, Clinical value of whole-genome sequencing of Mycobacterium tuberculosis, The Lancet Infectious Diseases, vol.15, issue.9, pp.1077-1090, 2015.
DOI : 10.1016/S1473-3099(15)00071-7

Z. Taylor and R. J. O-'brien, Tuberculosis Elimination, American Journal of Respiratory and Critical Care Medicine, vol.160, issue.1, pp.1-2, 2001.
DOI : 10.1164/ajrccm.158.6.9804029

A. Telenti, W. J. Philipp, S. Sreevatsan, C. Bernasconi, K. E. Stockbauer et al., The emb operon, a gene cluster of Mycobacterium tuberculosis involved in resistance to ethambutol, Nature Medicine, vol.37, issue.5, pp.567-570, 1997.
DOI : 10.1128/AAC.37.10.2054

S. Theus, K. Eisenach, N. Fomukong, R. F. Silver, and M. D. Cave, Beijing family Mycobacterium tuberculosis strains differ in their intracellular growth in THP-1 macrophages, 2007.

. Guesdon, IS6110, an IS-like element of Mycobacterium tuberculosis complex, Nucleic acids research, vol.18, pp.188-188, 1990.

E. Tortoli, The new mycobacteria: an update, FEMS Immunology & Medical Microbiology, vol.54, issue.2, pp.159-178, 2006.
DOI : 10.1056/NEJMoa012643

P. C. Adegbola and . Hill, Spatial analysis of tuberculosis in an urban west African setting: is there evidence of clustering?, Tropical Medicine & International Health, vol.15, pp.664-672, 2010.

L. Adams, R. Ramakrishnan, and . Losick, Do mycobacteria produce endospores?, Proceedings of the National Academy of Sciences, vol.107, pp.878-881, 2010.

M. Aman, P. M. Kato-maeda, and . Small, Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains, Proceedings of the National Academy of Sciences of the United States of America, vol.101, pp.4865-4870, 2004.

M. Tsukamura, The pattern of resistance development to rifampicin in mycobacterium tuberculosis, Tubercle, vol.53, issue.2, pp.111-117, 1972.
DOI : 10.1016/0041-3879(72)90027-X

M. Underner and J. C. Meurice, Tuberculose pulmonaire et primo-infection tuberculeus: Epidémiologie, diagnostic, évolution, traitement, prévention, La Revue du praticien, vol.49, pp.867-876, 1999.

A. G. Van-der-zanden, E. M. Te-koppele-vije, N. V. Bhanu, D. Van-soolingen, and L. M. Schouls, Use of DNA Extracts from Ziehl-Neelsen-Stained Slides for Molecular Detection of Rifampin Resistance and Spoligotyping of Mycobacterium tuberculosis, Journal of Clinical Microbiology, vol.41, issue.3, pp.1101-1108, 2003.
DOI : 10.1128/JCM.41.3.1101-1108.2003

A. G. Van-der-zanden, K. Kremer, L. M. Schouls, K. Caimi, A. Cataldi et al., Improvement of Differentiation and Interpretability of Spoligotyping for Mycobacterium tuberculosis Complex Isolates by Introduction of New Spacer Oligonucleotides, Journal of Clinical Microbiology, vol.40, issue.12, pp.4628-4639, 2002.
DOI : 10.1128/JCM.40.12.4628-4639.2002

C. Hermans, R. Martin, T. M. Mcadam, and . Shinnick, Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology, Journal of clinical microbiology, vol.31, pp.406-409, 1993.

K. S. Koedam, P. J. Teppema, G. S. Brennan, F. Besra, J. Portaels et al., A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: characterization of an exceptional isolate from Africa, International Journal of Systematic and Evolutionary Microbiology, vol.47, pp.1236-1245, 1997.

. Kernodle, Recombinant expression and characterization of the major B-lactamase of Mycobacterium tuberculosis, Antimicrobial agents and chemotherapy, vol.42, pp.1375-1381, 1998.

D. J. Eyre, P. M. Wilson, D. W. Hawkey, and . Crook, Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study, The Lancet infectious diseases, vol.13, pp.137-146, 2013.

P. D. Victor and . Van-helden, Mapping of IS6110 flanking regions in clinical isolates of Mycobacterium tuberculosis demonstrates genome plasticity, Molecular microbiology, vol.37, pp.1405-1416, 2000.

M. A. Nguyen, T. C. Behr, P. D. Victor, and . Van-helden, Microevolution of the direct repeat region of Mycobacterium tuberculosis: implications for interpretation of spoligotyping data, Journal of Clinical Microbiology, vol.40, pp.4457-4465, 2002.

V. Webb and J. Davies, Antibiotics and Antibiotic Resistance in Mycobacteria, 1998.
DOI : 10.1002/9781444311433.ch15

T. Weniger, J. Krawczyk, P. Supply, S. Niemann, and D. Harmsen, MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria, Nucleic Acids Research, vol.8, issue.4, pp.326-331, 2010.
DOI : 10.1186/1471-2180-8-103

E. Xia, Y. Teo, and R. T. Ong, SpoTyping: fast and accurate in silico Mycobacterium spoligotyping from sequence reads, Genome Medicine, vol.95, issue.6, p.1, 2016.
DOI : 10.1016/j.tube.2015.09.002

M. Yasmin, M. K. Gomgnimbou, R. T. Siddiqui, G. Refrégier, and C. Sola, Multi-drug resistant Mycobacterium tuberculosis complex genetic diversity and clues on recent transmission in Punjab, Pakistan, Infection, Genetics and Evolution, vol.27, pp.6-14, 2014.
DOI : 10.1016/j.meegid.2014.06.017

R. W. Yeh, A. P. De-leon, C. B. Agasino, J. A. Hahn, C. L. Daley et al., DNA Genotypes, The Journal of Infectious Diseases, vol.177, issue.4, pp.1107-1111, 1998.
DOI : 10.1086/517406

. Schwartzman, Contact investigation and genotyping to identify tuberculosis transmission to children. The Pediatric infectious disease journal, pp.1037-1043, 2006.

G. P. Youmans, G. W. Raleigh, and A. S. Youmans, The tuberculostatic action of para-aminosalicylic acid, Journal of bacteriology, vol.54, p.409, 1947.

Z. Contreras, J. Zhang, and . Manjourides, Identifying Hotspots of Multidrug-Resistant Tuberculosis Transmission Using Spatial and Molecular Genetic Data, Journal of Infectious Diseases, p.387, 2015.

R. Andremont, C. Ruimy, and . Sola, Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of"spoligotyping" with new spacers and a microbead-based hybridization assay, Journal of medical microbiology, vol.59, pp.285-294, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00527223

Y. Zhang and W. W. Yew, Mechanisms of drug resistance in Mycobacterium tuberculosis [State of the art series. Drug-resistant tuberculosis, 2009.

Y. Zhang, K. Post-martens, and S. Denkin, New drug candidates and therapeutic targets for tuberculosis therapy, Drug Discovery Today, vol.11, issue.1-2, pp.21-27, 2006.
DOI : 10.1016/S1359-6446(05)03626-3

R. Harijaona, A. Ratsiferana, R. Josuah, R. Herimanana, C. Sola et al., Spoligotype profile analyses of M. tuberculosis clinical strains isolated from the six different provinces of Madagascar Niaina Rakotosamimanana, Voahangy Rasolofo 2. Poster pour le symposium du RIIP du 10 au 13 Septembre 2014: Spatial distribution of Mycobacterium tuberculosis clinical strain genotypes in Antananarivo: a pilot study