.. Theoretical, 49 2.1.1 Relaxation paths, p.50

. Analysis and .. Spp-dispersion-relation, 88 4.3.1 Numerical dispersion relation, p.90

. Luminescence and .. Ptcdi-on-gold, 100 5.2.1 Strong coupling and Stokes shift

Y. I. Kim, Y. J. Song, K. S. Kim, B. Kim, J. H. Ozyilmaz et al., Roll-to-roll production of 30-inch graphene films for transparent electrodes, Nature Nanotechnology, vol.5, issue.8, pp.574-578, 2010.

Z. Bonaccorso, T. Sun, A. C. Hasan, and . Ferrari, Graphene photonics and optoelectronics, Nature Photonics, vol.10, issue.9, pp.611-622, 2010.
DOI : 10.1038/nphoton.2010.186

Y. Minami, T. Kasuya, Q. M. Yamazaki, W. Ji, J. P. Nakanishi et al., Highly Ordered 1D Fullerene Crystals for Concurrent Control of Macroscopic Cellular Orientation and Differentiation toward Large-Scale Tissue Engineering, Advanced Materials, vol.4, issue.27, pp.274020-4026, 2015.
DOI : 10.1038/srep04271

H. Shen, Y. H. Zhu, X. L. Yang, and C. Z. Li, Graphene quantum dots: emergent nanolights for bioimaging, sensors, catalysis and photovoltaic devices, Chemical Communications, vol.133, issue.31, pp.483686-3699, 2012.
DOI : 10.1021/ja2048804

S. Wong, S. L. Yoong, A. Jagusiak, T. Panczyk, H. K. Ho et al., Carbon nanotubes for delivery of small molecule drugs, Advanced Drug Delivery Reviews, vol.65, issue.15, pp.651964-2015, 2013.
DOI : 10.1016/j.addr.2013.08.005

P. Zhao, W. C. Ren, and H. M. Cheng, Graphene sponge for efficient and repeatable adsorption and desorption of water contaminations, Journal of Materials Chemistry, vol.3, issue.157, pp.20197-20202, 2012.
DOI : 10.1038/nnano.2008.136

D. Smith, A. Niklaus, S. Paussa, A. C. Vaziri, M. Fischer et al., Electromechanical Piezoresistive Sensing in Suspended Graphene Membranes, Nano Letters, vol.13, issue.7, pp.133237-3242, 2013.
DOI : 10.1021/nl401352k
URL : https://doi.org/10.1021/nl401352k

G. P. Huang, Y. Y. Liu, Z. Y. Lou, J. Dong, W. Q. Shen et al., A graphene oxide membrane with highly selective molecular separation of aqueous organic solution

L. Chang, Y. K. Choi, D. W. Ha, P. Ranade, S. Y. Xiong et al., Extremely scaled silicon nano-cmos devices, Proceedings of the Ieee, pp.911860-1873, 2003.

Y. K. Zang, J. S. Che, and . Moore, One-Dimensional Self-Assembly of Planar ??-Conjugated Molecules: Adaptable Building Blocks for Organic Nanodevices, Accounts of Chemical Research, vol.41, issue.12, pp.1596-1608, 2008.
DOI : 10.1021/ar800030w

V. Barth, G. Costantini, and K. Kern, Engineering atomic and molecular nanostructures at surfaces, Nature, vol.41, issue.7059, pp.671-679, 2005.
DOI : 10.1126/science.1091979

P. Zheng, J. J. Birktoft, Y. Chen, T. Wang, R. J. Sha et al., From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal, Nature, vol.13, issue.7260, pp.46174-77, 2009.
DOI : 10.1080/07391102.1990.10507829

J. Charra, P. Cousty, and . Samori, Surface-Induced Chirality in a Self-Assembled Monolayer of Discotic Liquid Crystal, Physical Review Letters, vol.51, issue.8, pp.1682-1685, 1998.
DOI : 10.1103/PhysRevE.51.R1651

S. Tahara, H. Furukawa, T. Uji-i, T. Uchino, J. Ichikawa et al., Two-Dimensional Porous Molecular Networks of Dehydrobenzo[12]annulene Derivatives via Alkyl Chain Interdigitation, Journal of the American Chemical Society, vol.128, issue.51, pp.12816613-16625, 2006.
DOI : 10.1021/ja0655441

L. Schull, C. Douillard, F. Fiorini-debuisschert, F. Charra, D. Mathevet et al., Single-Molecule Dynamics in a Self-Assembled 2D Molecular Sieve, Nano Letters, vol.6, issue.7, pp.1360-1363, 2006.
DOI : 10.1021/nl060292n

D. Bleger, F. Kreher, A. J. Mathevet, G. Attias, A. Schull et al., Surface noncovalent bonding for rational design of hierarchical molecular self-assemblies, Angewandte Chemie-International Edition, issue.39, pp.467404-7407, 2007.

U. Kuhn, L. Hakanson, V. Rogobete, and . Sandoghdar, Enhancement of singlemolecule fluorescence using a gold nanoparticle as an optical nanoantenna, Physical Review Letters, vol.97, issue.1, 2006.

L. Stiles, J. A. Dieringer, N. C. Shah, and R. R. Van-duyne, Surface-Enhanced Raman Spectroscopy, Annual Review of Analytical Chemistry, vol.1, issue.1, pp.601-626, 2008.
DOI : 10.1146/annurev.anchem.1.031207.112814

L. Barnes, A. Dereux, and T. W. Ebbesen, Surface plasmon subwavelength optics, Nature, vol.424, issue.6950, pp.824-830, 2003.
DOI : 10.1038/nature01937
URL : https://hal.archives-ouvertes.fr/hal-00472360

K. Gramotnev and S. I. Bozhevolnyi, Plasmonics beyond the diffraction limit, Nature Photonics, vol.89, issue.2, pp.83-91, 2010.
DOI : 10.1088/1464-4258/8/4/S06

N. Anker, W. P. Hall, O. Lyandres, N. C. Shah, J. Zhao et al., Biosensing with plasmonic nanosensors, Nature Materials, vol.636, issue.6, pp.442-453, 2008.
DOI : 10.1088/0957-4484/18/32/325101

. Homola, Surface Plasmon Resonance Sensors for Detection of Chemical and Biological Species, Chemical Reviews, vol.108, issue.2, pp.462-493, 2008.
DOI : 10.1021/cr068107d

Y. Kawata, P. Inouye, and . Verma, Plasmonics for near-field nano-imaging and superlensing, Nature Photonics, vol.305, issue.7, pp.388-394, 2009.
DOI : 10.1111/j.1365-2818.1994.tb03520.x

N. J. Hazle, J. L. Halas, and . West, Nanoshell-mediated near-infrared thermal therapy of tumors under magnetic resonance guidance, Proceedings of the National Academy of Sciences of the United States of America, pp.13549-13554, 2003.

A. Maier, M. L. Brongersma, P. G. Kik, S. Meltzer, A. A. Requicha et al., Plasmonics-A Route to Nanoscale Optical Devices, Advanced Materials, vol.13, issue.19, p.1501, 2001.
DOI : 10.1002/1521-4095(200110)13:19<1501::AID-ADMA1501>3.0.CO;2-Z

I. Bozhevolnyi, V. S. Volkov, E. Devaux, J. Y. Laluet, and T. W. Ebbesen, Channel plasmon subwavelength waveguide components including interferometers and ring resonators, Nature, vol.85, issue.7083, pp.440508-511, 2006.
DOI : 10.1038/nature04594

A. Atwater, A. Polman, A. J. Haes, and R. P. Van-duyne, Plasmonics for improved photovoltaic devices, Nature Materials, vol.14, issue.3, pp.205-213, 2002.
DOI : 10.1557/PROC-1002-N03-05

F. Oulton, V. J. Sorger, T. Zentgraf, R. M. Ma, C. Gladden et al., Plasmon lasers at deep subwavelength scale, Nature, vol.12, issue.7264, pp.461629-632, 2009.
DOI : 10.1063/1.321311
URL : http://spiral.imperial.ac.uk/bitstream/10044/1/19116/2/Nature_461_2009.pdf

A. Noginov, G. Zhu, A. M. Belgrave, R. Bakker, V. M. Shalaev et al., Demonstration of a spaser-based nanolaser, Nature, vol.6, issue.7259, pp.4601110-68, 2009.
DOI : 10.1103/PhysRev.69.37

J. J. Carminati, C. Greffet, J. M. Henkel, and . Vigoureux, Radiative and non-radiative decay of a single molecule close to a metallic nanoparticle, Optics Communications, vol.261, issue.2, pp.368-375, 2006.
DOI : 10.1016/j.optcom.2005.12.009
URL : https://hal.archives-ouvertes.fr/hal-00133243

D. Bleger, F. Mathevet, D. Kreher, A. Attias, A. Bocheux et al., Janus-like 3d tectons: Self-assembled 2d arrays of functional units at a defined distance from the substrate, Angewandte Chemie-International Edition, issue.29, pp.506562-6566, 2011.

H. J. Oelkrug, J. Egelhaaf, A. Gierschner, and . Tompert, Electronic deactivation in single chains, nano-aggregates and ultrathin films of conjugated oligomers, Synthetic Metals, vol.76, issue.1-3, pp.1-3249, 1996.
DOI : 10.1016/0379-6779(95)03464-1

G. Mcrae and M. Kasha, Enhancement of Phosphorescence Ability upon Aggregation of Dye Molecules, The Journal of Chemical Physics, vol.18, issue.4, pp.721-722, 1958.
DOI : 10.1021/j150553a007

T. E. Wurthner, C. R. Kaiser, and . Saha-moller, J-Aggregates: From Serendipitous Discovery to Supramolecular Engineering of Functional Dye Materials, Angewandte Chemie International Edition, vol.8, issue.123, pp.503376-3410, 2011.
DOI : 10.1016/j.orgel.2007.01.008

C. Spano, EXCITONS IN CONJUGATED OLIGOMER AGGREGATES, FILMS, AND CRYSTALS, Annual Review of Physical Chemistry, vol.57, issue.1, pp.217-243, 2006.
DOI : 10.1146/annurev.physchem.57.032905.104557

C. Frank and . Spano, The spectral signatures of frenkel polarons in h-and j-aggregates, Accounts of Chemical Research, vol.43, issue.3, pp.429-439, 2010.

T. Fofang, T. H. Park, O. Neumann, N. A. Mirin, P. Nordlander et al., Plexcitonic Nanoparticles: Plasmon???Exciton Coupling in Nanoshell???J-Aggregate Complexes, Nano Letters, vol.8, issue.10, pp.3481-3487, 2008.
DOI : 10.1021/nl8024278

S. Dintinger, F. Klein, W. L. Bustos, T. W. Barnes, and . Ebbesen, Strong coupling between surface plasmon-polaritons and organic molecules in subwavelength hole arrays, Physical Review B, vol.57, issue.3, p.5, 2005.
DOI : 10.1103/PhysRevLett.93.036404

J. Fidder, D. A. Knoester, and . Wiersma, Superradiant emission and optical dephasing in J-aggregates, Chemical Physics Letters, vol.171, issue.5-6, pp.5-6529, 1990.
DOI : 10.1016/0009-2614(90)85258-E

V. Korolkov, S. A. Svatek, A. Summerfield, J. Kerfoott, L. X. Yang et al., van der Waals-Induced Chromatic Shifts in Hydrogen-Bonded Two-Dimensional Porphyrin Arrays on Boron Nitride, electronic states. Journal of Photochemistry and Photobiology a-Chemistry, pp.10347-10355293, 1990.
DOI : 10.1021/acsnano.5b04443
URL : http://doi.org/10.1021/acsnano.5b04443

N. Markovitsi, F. Pfeffer, J. M. Charra, H. Nunzi, H. Bengs et al., Charge-transfer complexes of discogenic molecules : a time-resolved study based on Kerr ellipsometry, Journal of the Chemical Society, Faraday Transactions, vol.89, issue.1, pp.37-42, 1993.
DOI : 10.1039/ft9938900037

J. Hestand and F. C. Spano, Molecular Aggregate Photophysics beyond the Kasha Model: Novel Design Principles for Organic Materials, Accounts of Chemical Research, vol.50, issue.2, pp.341-350, 2017.
DOI : 10.1021/acs.accounts.6b00576

G. Arrigoni, D. Schull, L. Bleger, C. Douillard, F. Fiorini-debuisschert et al., Structure and Epitaxial Registry on Graphite of a Series of Nanoporous Self-Assembled Molecular Monolayers, The Journal of Physical Chemistry Letters, vol.1, issue.1, pp.190-194, 2010.
DOI : 10.1021/jz900146f

Y. Zhou, Y. B. Li, Q. Li, Y. B. Wang, Y. L. Yang et al., Switchable supramolecular assemblies on graphene, Nanoscale, vol.8, issue.14, pp.8387-8391, 2014.
DOI : 10.1038/nnano.2013.144

K. Geim and K. S. Novoselov, The rise of graphene, Nature Materials, vol.42, issue.3, pp.183-191, 2007.
DOI : 10.1038/nmat1849

K. Geim, Graphene: Status and Prospects, Science, vol.94, issue.10, pp.1530-1534, 2009.
DOI : 10.1021/nl801774a
URL : http://www.condmat.physics.manchester.ac.uk/pdf/mesoscopic/publications/graphene/science review 2009.pdf

B. Zhang, Y. W. Tan, H. L. Stormer, and P. Kim, Experimental observation of the quantum Hall effect and Berry's phase in graphene, Nature, vol.93, issue.7065, pp.438201-204, 2005.
DOI : 10.1103/PhysRevB.69.075104

C. R. Petrone, I. Dean, A. M. Meric, P. Y. Van-der-zande, L. Huang et al., Chemical Vapor Deposition-Derived Graphene with Electrical Performance of Exfoliated Graphene, Nano Letters, vol.12, issue.6, pp.2751-2756, 2012.
DOI : 10.1021/nl204481s

L. J. Wang, K. Zhi, and . Mullen, Transparent, Conductive Graphene Electrodes for Dye-Sensitized Solar Cells, Nano Letters, vol.8, issue.1, pp.323-327, 2008.
DOI : 10.1021/nl072838r

F. N. Mueller, P. Xia, and . Avouris, Graphene photodetectors for high-speed optical communications, Nature Photonics, vol.10, issue.5, pp.297-301, 2010.
DOI : 10.1109/JSTQE.2006.883151
URL : http://arxiv.org/pdf/1009.4465

H. Matyba, G. Yamaguchi, M. Eda, L. Chhowalla, N. D. Edman et al., Graphene and Mobile Ions: The Key to All-Plastic, Solution-Processed Light-Emitting Devices, ACS Nano, vol.4, issue.2, pp.637-642, 2010.
DOI : 10.1021/nn9018569
URL : http://nanotubes.rutgers.edu/PDFs/ACSNano2010_Hisato_LEC.pdf

P. Sun, T. Hasan, F. Torrisi, D. Popa, G. Privitera et al., Graphene Mode-Locked Ultrafast Laser, ACS Nano, vol.4, issue.2, pp.803-810, 2010.
DOI : 10.1021/nn901703e
URL : https://hal.archives-ouvertes.fr/hal-00413082

X. Wang, F. J. Zhang, X. C. Garcia-vidal, J. Yuan, and . Teng, Strong Coupling of Surface Plasmon Polaritons in Monolayer Graphene Sheet Arrays, Physical Review Letters, vol.109, issue.7, p.2012
DOI : 10.1126/science.1174655

M. Macleod and F. Rosei, Molecular Self-Assembly on Graphene, Small, vol.3, issue.9, pp.1038-1049, 2014.
DOI : 10.1021/jz300802k

A. V. Li, M. Klekachev, C. Cantoro, A. Huyghebaert, I. Stesmans et al., Toward tunable doping in graphene FETs by molecular self-assembled monolayers, Nanoscale, vol.3, issue.20, pp.59640-9644, 2013.
DOI : 10.1038/ncomms1740

A. Mathevet and . Attias, A versatile strategy towards non-covalent functionalization of graphene by surface-confined supramolecular self-assembly of janus tectons, Beilstein Journal of Nanotechnology, vol.6, pp.632-639, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01207184

S. Mali, J. Greenwood, J. Adisoejoso, R. Phillipson, and S. Feyter, Nanostructuring graphene for controlled and reproducible functionalization, Nanoscale, vol.13, issue.5, pp.1566-1585, 2015.
DOI : 10.1021/nl304632e

M. Macleod and F. Rosei, Molecular Self-Assembly on Graphene, Small, vol.3, issue.9, pp.1038-1049, 2014.
DOI : 10.1021/jz300802k

X. Zhang, H. L. Huang, X. M. Yang, and L. Zang, Tailoring Electronic Properties of Graphene by ??????? Stacking with Aromatic Molecules, The Journal of Physical Chemistry Letters, vol.2, issue.22, pp.2897-2905, 2011.
DOI : 10.1021/jz201273r

W. H. Park, S. Lee, S. H. Huh, S. B. Sim, K. Kim et al., Work-Function Engineering of Graphene Electrodes by Self-Assembled Monolayers for High-Performance Organic Field-Effect Transistors, The Journal of Physical Chemistry Letters, vol.2, issue.8, pp.841-845, 2011.
DOI : 10.1021/jz200265w

M. Wang, J. B. Xu, W. G. Xie, and J. Du, Quantitative Analysis of Graphene Doping by Organic Molecular Charge Transfer, The Journal of Physical Chemistry C, vol.115, issue.15, pp.7596-7602, 2011.
DOI : 10.1021/jp200386z

Q. Hua, W. , and M. C. Hersam, Nanofabrication of heteromolecular organic nanostructures on epitaxial graphene via room temperature feedback-controlled lithography, Nano Letters, vol.11, issue.2, pp.589-593, 2011.

A. J. Yang, G. Mayne, G. Comtet, Y. Dujardin, P. Kuk et al., STM imaging, spectroscopy and manipulation of a self-assembled PTCDI monolayer on epitaxial graphene, Physical Chemistry Chemical Physics, vol.486, issue.14, pp.154939-4946, 2013.
DOI : 10.1016/S0039-6028(01)01057-3

K. Ishii, E. Sugiyama, K. Ito, and . Seki, Energy Level Alignment and Interfacial Electronic Structures at Organic/Metal and Organic/Organic Interfaces, Advanced Materials, vol.11, issue.8, p.605, 1999.
DOI : 10.1002/(SICI)1521-4095(199906)11:8<605::AID-ADMA605>3.0.CO;2-Q

F. Hieulle and . Silly, Localized intermolecular electronic coupling in two-dimensional self-assembled 310-perylenetetracarboxylic diimide nanoarchitectures, Journal of Materials Chemistry C, vol.49, issue.130, pp.4536-4539, 2013.
DOI : 10.1039/c3tc30771a

M. , R. Forker, and T. Fritz, Optical differential reflectance spectroscopy on thin molecular films, Annu. Rep. Prog. Chem., Sect. C: Phys. Chem, vol.108, pp.34-68
DOI : 10.1039/c2pc90002e

T. Proehl, R. Dienel, T. Nitsche, and . Fritz, Formation of Solid-State Excitons in Ultrathin Crystalline Films of PTCDA: From Single Molecules to Molecular Stacks, Physical Review Letters, vol.307, issue.309, p.4, 2004.
DOI : 10.1016/S0375-9601(01)00841-6

C. Forker, G. Golnik, T. Pizzi, T. Dienel, and . Fritz, Optical absorption spectra of ultrathin PTCDA films on gold single crystals: Charge transfer beyond the first monolayer, Organic Electronics, vol.10, issue.8, pp.1448-1453, 2009.
DOI : 10.1016/j.orgel.2009.08.005

U. Kampen, G. Salvan, M. Friedrich, D. A. Tenne, S. Park et al., Optical characterisation of PTCDA films grown on passivated semiconductor substrates, Applied Surface Science, vol.166, issue.1-4, pp.1-4387, 2000.
DOI : 10.1016/S0169-4332(00)00454-2

C. Dienel, S. C. Loppacher, R. Mannsfeld, T. Forker, and . Fritz, Growth-Mode-Induced Narrowing of Optical Spectra of an Organic Adlayer, Advanced Materials, vol.36, issue.5, p.959, 2008.
DOI : 10.1002/adma.200701684

A. Muller, A. Paulheim, M. Eisfeld, and . Sokolowski, Finite size line broadening and superradiance of optical transitions in two dimensional long-range ordered molecular aggregates, The Journal of Chemical Physics, vol.139, issue.4, p.9, 2013.
DOI : 10.1063/1.2052591

H. Schafer, C. Seidel, and H. Fuchs, The effect of annealing on the photoluminescence of epitaxial dme-ptcdi multilayers on ag(110) Thin Solid Films, pp.176-182, 2000.

M. Meissner, F. Gruenewald, C. Sojka, R. Udhardt, T. Forker et al., Highly ordered growth of PTCDA on epitaxial bilayer graphene, Surface Science, vol.606, issue.21-22, pp.21-221709, 2012.
DOI : 10.1016/j.susc.2012.07.016

G. Schull, H. Ness, L. Douillard, C. Fiorini-debuisschert, F. Charra et al., Single Atom Substitution for Marking and Motion Tracking of Individual Molecules by Scanning Tunneling Microscopy, The Journal of Physical Chemistry C, vol.112, issue.36, pp.11214058-14063, 2008.
DOI : 10.1021/jp8030013

M. E. Kaneda, D. L. Stawasz, B. A. Sampson, and . Parkinson, Stm investigations of the two-dimensional ordering of perylenetetracarboxylic acid n-alkyl-diimides on hopg and mos2 surfaces, Langmuir, issue.20, pp.176185-6195, 2001.

. Verhoeven, Glossary of terms used in photochemistry (IUPAC Recommendations 1996), Pure and Applied Chemistry, vol.68, issue.12, pp.2223-2286, 1996.
DOI : 10.1351/pac199668122223

E. Clark, C. Y. Qin, and A. D. Li, Beyond Exciton Theory:?? A Time-Dependent DFT and Franck???Condon Study of Perylene Diimide and Its Chromophoric Dimer, Journal of the American Chemical Society, vol.129, issue.24, pp.7586-7595, 2007.
DOI : 10.1021/ja0687724

A. Balakrishnan, T. Datar, J. L. Naddo, R. Huang, M. Oitker et al., Effect of Side-Chain Substituents on Self-Assembly of Perylene Diimide Molecules:?? Morphology Control, Journal of the American Chemical Society, vol.128, issue.22, pp.1287390-7398, 2006.
DOI : 10.1021/ja061810z

K. Mizuguchi and . Tojo, Electronic Structure of Perylene Pigments as Viewed from the Crystal Structure and Excitonic Interactions, The Journal of Physical Chemistry B, vol.106, issue.4, pp.767-772, 2002.
DOI : 10.1021/jp012909p

N. M. Stauber, A. K. Peres, and . Geim, Optical conductivity of graphene in the visible region of the spectrum, Physical Review B, vol.7, issue.8, p.8, 2008.
DOI : 10.1103/PhysRevB.64.235114

J. Dignam, M. Moskovits, and R. W. Stobie, Specular reflectance and ellipsometric spectroscopy of oriented molecular layers, Transactions of the Faraday Society, vol.67, issue.587, p.3306, 1971.
DOI : 10.1039/tf9716703306

J. Dignam and M. Moskovites, Optical properties of sub-monolayer molecular films, Journal of the Chemical Society, Faraday Transactions 2, vol.69, issue.1, pp.56-64, 1973.
DOI : 10.1039/f29736900056

R. Heinemeyer, L. Scholz, M. I. Gisslen, J. O. Alonso, M. Osso et al., Exciton-phonon coupling in diindenoperylene thin films, Physical Review B, vol.41, issue.456, p.78, 2008.
DOI : 10.1063/1.1556180

S. Bayliss and E. G. Mcrae, Solvent Effects in Organic Spectra: Dipole Forces and the Franck???Condon Principle, The Journal of Physical Chemistry, vol.58, issue.11, pp.1002-1006, 1954.
DOI : 10.1021/j150521a017

D. Cohen-claude-tannoudji, L. Bernard, and . Franck, Mécanique quantique. tome i, 1973.

H. , C. Neto, F. Guinea, N. M. Peres, K. S. Novoselov et al., The electronic properties of graphene, Reviews of Modern Physics, vol.81, issue.1, pp.109-162, 2009.

G. Delport, Non-convalent functionalization of carbon nanotubes: From the organization of surfactants to the self-assembly ofporphyrins, 2016.
URL : https://hal.archives-ouvertes.fr/tel-01505288

Q. Tian, J. B. Xu, and X. M. Wang, Self-Assembly of PTCDA Ultrathin Films on Graphene: Structural Phase Transition and Charge Transfer Saturation, The Journal of Physical Chemistry C, vol.114, issue.49, pp.20917-20924, 2010.
DOI : 10.1021/jp1031674

J. Ferguson and T. S. Jones, Photophysics of PTCDA and Me-PTCDI Thin Films:?? Effects of Growth Temperature, The Journal of Physical Chemistry B, vol.110, issue.13, pp.6891-6898, 2006.
DOI : 10.1021/jp056899u

S. K. Jarvinen, K. Hamalainen, P. Banerjee, M. Hakkinen, A. Ijas et al., and h-BN Substrates, Nano Letters, vol.13, issue.7, pp.3199-3204, 2013.
DOI : 10.1021/nl401265f

B. Ludwig, J. Gompf, R. Petersen, W. Strohmaier, and . Eisenmenger, STM investigations of PTCDA and PTCDI on graphite and MoS2. A systematic study of epitaxy and STM image contrast, Zeitschrift f???r Physik B Condensed Matter, vol.55, issue.44, pp.365-373, 1994.
DOI : 10.1007/BF01312708

P. Du, M. Jaouen, A. Bocheux, C. Bourgogne, Z. Han et al., Surface-confined self-assembled janus tectons: A versatile platform towards the noncovalent functionalization of graphene, Angewandte Chemie-International Edition, issue.38, pp.5310060-10066, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01369114

L. Liepvre, P. Du, D. Kreher, F. Mathevet, A. J. Attias et al., Fluorescent Self-Assembled Molecular Monolayer on Graphene, ACS Photonics, vol.3, issue.12, pp.2291-2296, 2016.
DOI : 10.1021/acsphotonics.6b00793
URL : https://hal.archives-ouvertes.fr/hal-01419546

C. R. Wurthner, B. Saha-moller, S. Fimmel, P. Ogi, D. Leowanawat et al., Perylene Bisimide Dye Assemblies as Archetype Functional Supramolecular Materials, Chemical Reviews, vol.116, issue.3, pp.962-1052, 2016.
DOI : 10.1021/acs.chemrev.5b00188

P. Sun, A. D. Hendsbee, A. J. Dobson, G. C. Welch, and I. G. Hill, Perylene diimide based all small-molecule organic solar cells: Impact of branched-alkyl side chains on solubility, photophysics, self-assembly, and photovoltaic parameters, Organic Electronics, vol.35, pp.151-157, 2016.
DOI : 10.1016/j.orgel.2016.05.012

R. L. Malenfant, C. D. Dimitrakopoulos, J. D. Gelorme, L. L. Kosbar, T. O. Graham et al., -type organic thin-film transistor with high field-effect mobility based on a N,N???-dialkyl-3,4,9,10-perylene tetracarboxylic diimide derivative, Applied Physics Letters, vol.80, issue.14, pp.10-802517, 2002.
DOI : 10.1063/1.120381

C. Ma, Y. L. Guo, Y. G. Wen, Y. Q. Liu, and X. W. Zhan, ???-ditridecyl perylene diimide, Applied Physics Letters, vol.103, issue.20, p.4, 2013.
DOI : 10.1021/ja063290d

M. T. Zhong, R. S. Trinh, W. Chen, P. P. Wang, B. Khlyabich et al., Efficient Organic Solar Cells with Helical Perylene Diimide Electron Acceptors, Journal of the American Chemical Society, vol.136, issue.43, pp.13615215-15221, 2014.
DOI : 10.1021/ja5092613

Z. Lin and X. W. Zhan, Non-fullerene acceptors for organic photovoltaics: an emerging horizon, Materials Horizons, vol.49, issue.5, pp.470-488, 2014.
DOI : 10.1002/anie.200905117

D. Harcourt, K. P. Ghiggino, G. D. Scholes, and S. Speiser, On the origin of matrix elements for electronic excitation (energy) transfer, The Journal of Chemical Physics, vol.105, issue.5, pp.1897-1901, 1996.
DOI : 10.1063/1.461912

A. H. Seidel, H. Schafer, and . Fuchs, Oriented growth of DMe-PTCDI on Ag(110); an LEED, XPS, SFM and STM characterisation, Surface Science, vol.459, issue.3, pp.310-322, 2000.
DOI : 10.1016/S0039-6028(00)00465-9

M. Purcell, Spontaneous Emission Probabilities at Radio Frequencies, Physical Review, vol.69, issue.111, pp.681-681, 1946.
DOI : 10.1007/978-1-4615-1963-8_40

Z. F. Liu, X. Y. Liu, L. Y. Zhong, N. Yang, G. L. Zhang et al., Polymer Photovoltaic Cells Based on Solution-Processable Graphene and P3HT, Advanced Functional Materials, vol.8, issue.6, pp.894-904, 2009.
DOI : 10.1103/PhysRevB.66.033408

S. Sghaier, C. Le-liepvre, L. Fiorini, F. Douillard, and . Charra, Optical absorption signature of a self-assembled dye monolayer on graphene, Beilstein Journal of Nanotechnology, vol.7, pp.862-868, 2016.
DOI : 10.3762/bjnano.7.78
URL : https://hal.archives-ouvertes.fr/cea-01485210

P. Anger, L. Bharadwaj, and . Novotny, Enhancement and quenching of singlemolecule fluorescence, Physical Review Letters, issue.11, p.96, 2006.

A. A. Kasry, G. S. Ardakani, B. Tulevski, M. Menges, L. Copel et al., Highly Efficient Fluorescence Quenching with Graphene, The Journal of Physical Chemistry C, vol.116, issue.4, pp.2858-2862, 2012.
DOI : 10.1021/jp207972f

A. C. Dulkeith, T. Morteani, T. A. Niedereichholz, J. Klar, S. A. Feldmann et al., Fluorescence Quenching of Dye Molecules near Gold Nanoparticles: Radiative and Nonradiative Effects, Physical Review Letters, vol.72, issue.20, p.89, 2002.
DOI : 10.1021/jp0134695

D. Bleger, F. Kreher, A. J. Mathevet, G. Attias, A. Schull et al., Surface noncovalent bonding for rational design of hierarchical molecular self-assemblies, Angewandte Chemie-International Edition, issue.39, pp.467404-7407, 2007.

P. Du, M. Jaouen, A. Bocheux, C. Bourgogne, Z. Han et al., Surface-Confined Self-Assembled Janus Tectons: A Versatile Platform towards the Noncovalent Functionalization of Graphene, Angewandte Chemie International Edition, vol.24, issue.38, pp.10060-10066, 2008.
DOI : 10.1002/adfm.201301732
URL : https://hal.archives-ouvertes.fr/hal-01369114

H. Ji, R. Majithia, X. Yang, X. Xu, and K. More, Self-Assembly of Perylenediimide and Naphthalenediimide Nanostructures on Glass Substrates through Deposition from the Gas Phase, Journal of the American Chemical Society, vol.130, issue.31, p.10056, 2008.
DOI : 10.1021/ja803079w

R. Forrest, Ultrathin Organic Films Grown by Organic Molecular Beam Deposition and Related Techniques, Chemical Reviews, vol.97, issue.6, pp.1793-1896, 1997.
DOI : 10.1021/cr941014o

J. Cheng, W. L. Wang, H. Mosallaei, and E. Kaxiras, Surface Plasmon Engineering in Graphene Functionalized with Organic Molecules: A Multiscale Theoretical Investigation, Nano Letters, vol.14, issue.1, pp.50-56, 2014.
DOI : 10.1021/nl403005s

P. E. Bulovic, S. R. Burrows, J. A. Forrest, M. E. Cronin, and . Thompson, Study of localized and extended excitons in 310-perylenetetracarboxylic dianhydride (ptcda) .1. spectroscopic properties of thin films and solutions, Chemical Physics, vol.49, issue.21012, pp.1-12, 1996.

R. Forrest, Ultrathin Organic Films Grown by Organic Molecular Beam Deposition and Related Techniques, Chemical Reviews, vol.97, issue.6, pp.1793-1896, 1997.
DOI : 10.1021/cr941014o

M. Malard, M. A. Pimenta, G. Dresselhaus, and M. S. Dresselhaus, Raman spectroscopy in graphene, Physics Reports, vol.473, issue.5-6, pp.5-651, 2009.
DOI : 10.1016/j.physrep.2009.02.003

R. Beams, L. G. Cancado, and L. Novotny, Raman characterization of defects and dopants in graphene, Journal of Physics: Condensed Matter, vol.27, issue.8, p.2015
DOI : 10.1088/0953-8984/27/8/083002

L. M. Ling, Y. Xie, H. Fang, H. L. Xu, J. Zhang et al., Can Graphene be used as a Substrate for Raman Enhancement?, Nano Letters, vol.10, issue.2, pp.553-561, 2010.
DOI : 10.1021/nl903414x

E. Dent and . Smith, Modern raman spectroscopy: a practical approach, 2013.

D. Williams, D. S. Bradshaw, and D. L. Andrews, Raman scattering mediated by neighboring molecules, The Journal of Chemical Physics, vol.23, issue.17, p.9, 2016.
DOI : 10.1002/3527602747
URL : http://aip.scitation.org/doi/pdf/10.1063/1.4948366

D. Williams, D. S. Bradshaw, and D. L. Andrews, Symmetry analysis of Raman scattering mediated by neighboring molecules, The Journal of Chemical Physics, vol.6, issue.18, p.1457, 2016.
DOI : 10.1016/0584-8539(90)80004-I

C. Rajesh, H. Majumder, Y. Mizuseki, and . Kawazoe, A theoretical study on the interaction of aromatic amino acids with graphene and single walled carbon nanotube, The Journal of Chemical Physics, vol.2005, issue.12, p.6, 2009.
DOI : 10.1063/1.453520

D. Chakarova-kack, E. Schroder, B. I. Lundqvist, and D. C. Langreth, Application of van der Waals Density Functional to an Extended System: Adsorption of Benzene and Naphthalene on Graphite, Physical Review Letters, vol.96, issue.14, p.964, 2006.
DOI : 10.1021/j100724a010

A. Zaborova, H. Six, F. Amokrane, F. Charra, A. J. Mathevet et al., Abstract, Pure and Applied Chemistry, vol.21, issue.10-11, pp.10-111005, 2016.
DOI : 343192001

A. Jouy, Y. Vasanelli, A. Todorov, G. Delteil, L. Biasiol et al., Transition from strong to ultrastrong coupling regime in mid-infrared metal-dielectricmetal cavities, Applied Physics Letters, issue.23, p.98, 2011.

A. M. Todorov, R. Andrews, S. Colombelli, C. De-liberato, P. Ciuti et al., Ultrastrong Light-Matter Coupling Regime with Polariton Dots, Physical Review Letters, vol.105, issue.19, p.105, 2010.
DOI : 10.1119/1.1953050
URL : http://arxiv.org/pdf/1301.1297

B. Johnson and R. W. Christy, Optical Constants of the Noble Metals, Physical Review B, vol.1, issue.12, pp.4370-4379, 1972.
DOI : 10.1103/PhysRevB.1.498

P. Puccioni and G. L. Lippi, Stochastic Simulator for modeling the transition to lasing, Optics Express, vol.23, issue.3, pp.2369-2374, 2015.
DOI : 10.1364/OE.23.002369

M. Born and E. Wolf, Principles of optics: electromagnetic theory of propagation, interference and diffraction of light, 2013.
DOI : 10.1017/CBO9781139644181

M. Yeatman, Resolution and sensitivity in surface plasmon microscopy and sensing, Biosensors and Bioelectronics, vol.11, issue.6-7, pp.635-649, 1996.
DOI : 10.1016/0956-5663(96)83298-2

J. R. Hohenau, A. Krenn, O. Drezet, S. Mollet, C. Huant et al., Surface plasmon leakage radiation microscopy at the diffraction limit, Optics Express, vol.19, issue.25, pp.25749-25762, 2011.
DOI : 10.1364/OE.19.025749

Y. R. Wang and . Shen, General Properties of Local Plasmons in Metal Nanostructures, Physical Review Letters, vol.97, issue.20, p.4, 2006.
DOI : 10.1103/PhysRevLett.90.027402

W. Zhou, M. Dridi, J. Y. Suh, D. T. Kim, M. R. Co et al., Lasing action in strongly coupled plasmonic nanocavity arrays, Nature Nanotechnology, vol.110, issue.7, pp.506-511, 2013.
DOI : 10.1103/PhysRevLett.110.206802

. Granet, Reformulation of the lamellar grating problem through the concept of adaptive spatial resolution, Journal of the Optical Society of America A, vol.16, issue.10, pp.2510-2516, 1999.
DOI : 10.1364/JOSAA.16.002510

V. Somaschi, L. Giesz, J. C. De-santis, M. P. Loredo, G. Almeida et al., Near-optimal single-photon sources in the solid state, Nature Photonics, vol.5, issue.5, pp.340-345, 2016.
DOI : 10.1080/09500340802337374
URL : https://hal.archives-ouvertes.fr/hal-01386640

B. Deotare, T. S. Mahony, and V. Bulovic, Ultracompact Low-Threshold Organic Laser, ACS Nano, vol.8, issue.11, pp.11080-11085, 2014.
DOI : 10.1021/nn504444g

M. Birnbaum, A. Boca, R. Miller, A. D. Boozer, T. E. Northup et al., Photon blockade in an optical cavity with one trapped atom Ultrafast all-optical switching by single photons, Nature Nature Photonics, vol.436, issue.69, pp.87-90605, 2005.

C. Andreani, G. Panzarini, and J. M. Gerard, Strong-coupling regime for quantum boxes in pillar microcavities: Theory, Physical Review B, vol.29, issue.19, pp.13276-13279, 1999.
DOI : 10.1103/PhysRevB.47.3832

J. A. Schwartz, C. Hutchison, T. W. Genet, and . Ebbesen, Reversible switching of ultrastrong light-molecule coupling, Physical Review Letters, vol.106, issue.19, 2011.
DOI : 10.1109/cleoe.2011.5943715

E. Gomez, K. C. Vernon, P. Mulvaney, and T. J. Davis, Surface Plasmon Mediated Strong Exciton???Photon Coupling in Semiconductor Nanocrystals, Nano Letters, vol.10, issue.1, pp.274-278, 2010.
DOI : 10.1021/nl903455z

I. Vakevainen, R. J. Moerland, H. T. Rekola, A. P. Eskelinen, J. P. Martikainen et al., Plasmonic Surface Lattice Resonances at the Strong Coupling Regime, Nano Letters, vol.14, issue.4, pp.1721-1727, 2014.
DOI : 10.1021/nl4035219

P. Torma and W. L. Barnes, Strong coupling between surface plasmon polaritons and emitters: a review, Reports on Progress in Physics, vol.7834, issue.1, pp.13901-13935

C. Bellessa, J. C. Bonnand, J. Plenet, and . Mugnier, Strong Coupling between Surface Plasmons and Excitons in an Organic Semiconductor, Physical Review Letters, vol.53, issue.3, 2004.
DOI : 10.1103/PhysRevB.67.085311

M. Bolger, W. Dickson, A. V. Krasavin, L. Liebscher, S. G. Hickey et al., Amplified spontaneous emission of surface plasmon polaritons and limitations on the increase of their propagation length, Optics Letters, vol.35, issue.8, pp.351197-1199, 2010.
DOI : 10.1364/OL.35.001197

J. Bergman and M. I. Stockman, Surface Plasmon Amplification by Stimulated Emission of Radiation: Quantum Generation of Coherent Surface Plasmons in Nanosystems, Physical Review Letters, vol.6, issue.2, 2003.
DOI : 10.1063/1.125639

H. Chen, J. F. Li, M. L. Ren, B. L. Wang, J. X. Fu et al., Direct observation of amplified spontaneous emission of surface plasmon polaritons at metal/dielectric interfaces, Applied Physics Letters, vol.98, issue.26, p.983, 2011.
DOI : 10.1038/nphoton.2008.85

A. V. Marini, D. V. Gorbach, A. V. Skryabin, and . Zayats, Amplification of surface plasmon polaritons in the presence of nonlinearity and spectral signatures of threshold crossover, Optics Letters, vol.34, issue.18, pp.2864-2866, 2009.
DOI : 10.1364/OL.34.002864

A. Leatherdale, W. K. Woo, F. V. Mikulec, and M. G. Bawendi, On the Absorption Cross Section of CdSe Nanocrystal Quantum Dots, The Journal of Physical Chemistry B, vol.106, issue.31, pp.7619-7622, 2002.
DOI : 10.1021/jp025698c

J. Sun and E. M. Goldys, Linear Absorption and Molar Extinction Coefficients in Direct Semiconductor Quantum Dots, The Journal of Physical Chemistry C, vol.112, issue.25, pp.9261-9266, 2008.
DOI : 10.1021/jp800700m

K. Kitur, G. Zhu, and M. A. Noginov, Low-threshold stimulated emission of surface plasmons polaritons, Journal of Optics, vol.16, issue.11, pp.16-2014
DOI : 10.1088/2040-8978/16/11/114020

K. Ding, B. Li, B. Z. Liu, and . Tang, Bioprobes Based on AIE Fluorogens, Accounts of Chemical Research, vol.46, issue.11, pp.2441-2453, 2013.
DOI : 10.1021/ar3003464

G. Kozlov, V. Bulovic, P. E. Burrows, and S. R. Forrest, Laser action in organic semiconductor waveguide and double-heterostructure devices, Nature, vol.61, issue.6649, pp.389362-364, 1997.
DOI : 10.1063/1.108094

B. Valeur, Molecular Fluorescence, 2001.

D. Xia, W. Y. Lai, P. A. Levermore, W. Huang, and D. D. Bradley, Low-Threshold Distributed-Feedback Lasers Based on Pyrene-Cored Starburst Molecules with 1,3,6,8-Attached Oligo(9,9-Dialkylfluorene) Arms, Advanced Functional Materials, vol.70, issue.17, pp.192844-2850, 2009.
DOI : 10.1002/adfm.200900503

J. Clark, J. Chang, F. C. Spano, R. H. Friend, and C. Silva, Determining exciton bandwidth and film microstructure in polythiophene films using linear absorption spectroscopy, Applied Physics Letters, vol.46, issue.16, p.94, 2009.
DOI : 10.1103/PhysRevB.74.115318

J. Groszek, Selective Adsorption at Graphite/Hydrocarbon Interfaces, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.314, issue.1519, p.314473, 1519.
DOI : 10.1098/rspa.1970.0019

C. A. Peng and . Richter, Toward clean and crackless transfer of graphene, Acs Nano, vol.5, issue.11, pp.9144-9153, 2011.

I. Dapprich, K. S. Komaromi, K. Byun, M. J. Morokuma, and . Frisch, A new ONIOM implementation in Gaussian98. Part I. The calculation of energies, gradients, vibrational frequencies and electric field derivatives, Journal of Molecular Structure: THEOCHEM, vol.461, issue.462, pp.1-21, 1999.
DOI : 10.1016/S0166-1280(98)00475-8

K. Rappe, C. J. Casewit, K. S. Colwell, W. A. Goddard, and W. M. Skiff, UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations, Journal of the American Chemical Society, vol.114, issue.25, pp.11410024-10035, 1992.
DOI : 10.1021/ja00051a040

P. Andersson and P. Uvdal, New Scale Factors for Harmonic Vibrational Frequencies Using the B3LYP Density Functional Method with the Triple-?? Basis Set 6-311+G(d,p), The Journal of Physical Chemistry A, vol.109, issue.12, pp.2937-2941, 2005.
DOI : 10.1021/jp045733a