M. Konstantakaki, J. Changeux, A. Taly, and *. , Docking of ?-cobratoxin suggests a basal conformation of the nicotinic receptor, Biochemical and Biophysical Research Communications, vol.359, issue.3, pp.413-421, 2005.
DOI : 10.1016/j.bbrc.2007.05.126

A. Taly, V. Grutter, T. Taly, and A. Toxins, Modélisation des interactions entre toxines et récepteur nicotinique de l'acétylcholine, From Toxins Targeting Ligand Gated Ion Channels to Therapeutic Molecules, pp.260-293, 2011.

M. Simoes, A. Nassiripourdori, P. Corringer, J. Changeux, M. Karplus et al., a4b2 Nicotinic Acetylcholine Receptors Resting to Active State Transition " en préparation 2008-2009 Encadrement d'un post

A. *. Taly, C. Colas, T. Malliavin, A. Blondel, M. Nilges et al., in press Discrimination of agonists versus antagonists of nicotinic ligands based on docking onto AChBP structures, J Mol Graph Model, 2011.

R. Jiang, D. Lemoine, A. Martz, A. Taly, S. Gonin et al., Agonist trapped in ATP-binding sites of the P2X2 receptor, Proceedings of the National Academy of Sciences, vol.31, issue.2, pp.9066-71, 2011.
DOI : 10.1006/jmbi.1993.1626

S. Charon, A. Taly, R. J. Perret, P. Goeldner, and M. , Binding Modes of Noncompetitive GABA-Channel Blockers Revisited Using Engineered Affinity-Labeling Reactions Combined with New Docking Studies, Journal of Agricultural and Food Chemistry, vol.59, issue.7, pp.2803-2807, 2011.
DOI : 10.1021/jf102468n

R. Jiang, A. Martz, S. Gonin, A. Taly, L. De-carvalho et al., A Putative Extracellular Salt Bridge at the Subunit Interface Contributes to the Ion Channel Function of the ATP-gated P2X2 Receptor, Journal of Biological Chemistry, vol.23, issue.21, pp.15805-15820, 2010.
DOI : 10.1523/JNEUROSCI.5429-03.2004

M. Spichty, A. Taly, F. Hagn, H. Kessler, S. Barluenga et al., The HSP90 binding mode of a radicicol-like E-oxime determined by docking, binding free energy estimations, and NMR 15N chemical shifts, Biophysical Chemistry, vol.143, issue.3, pp.111-134, 2009.
DOI : 10.1016/j.bpc.2009.04.003

G. Guerlet, A. Taly, L. Prado-de-carvalho, A. Martz, R. Jiang et al., Comparative models of P2X2 receptor support inter-subunit ATP-binding sites, Biochemical and Biophysical Research Communications, vol.375, issue.3, pp.405-414, 2008.
DOI : 10.1016/j.bbrc.2008.08.030

N. Bocquet, L. Prado-de-carvalho, J. Cartaud, J. Neyton, L. Poupon et al., A prokaryotic proton-gated ion channel from the nicotinic acetylcholine receptor family, Nature, vol.98, issue.7123, pp.116-125, 2007.
DOI : 10.1038/nature05371
URL : https://hal.archives-ouvertes.fr/hal-00122527

A. *. Taly, P. Corringer, T. Grutter, L. Prado-de-carvalho, M. Karplus et al., Implications of the quaternary twist allosteric model for the physiology and pathology of nicotinic acetylcholine receptors, Proceedings of the National Academy of Sciences, vol.22, issue.12, pp.16965-70, 2006.
DOI : 10.1002/bip.360221211
URL : https://hal.archives-ouvertes.fr/pasteur-00161366

T. Grutter, L. De-carvalho, V. Dufresne, A. Taly, S. Edelstein et al., Molecular tuning of fast gating in pentameric ligand-gated ion channels, Proceedings of the National Academy of Sciences, vol.111, issue.4, pp.18207-18219, 2005.
DOI : 10.1172/JCI200316997
URL : https://hal.archives-ouvertes.fr/pasteur-00162528

A. Taly, M. Delarue, T. Grutter, N. Nilges, L. Novère et al., Normal Mode Analysis Suggests a Quaternary Twist Model for the Nicotinic Receptor Gating Mechanism, Biophysical Journal, vol.88, issue.6, pp.3954-65, 2005.
DOI : 10.1529/biophysj.104.050229
URL : https://hal.archives-ouvertes.fr/pasteur-00162514

T. Grutter, L. Prado-de-carvalho, V. Dufresne, A. Taly, M. Fischer et al., Comptes rendus de l'Académie des sciencesA chimera encoding the fusion of an acetylcholine-binding protein to an ion channel is stabilized in a state close to the desensitized form of ligand-gated ion channels, pp.223-257, 2005.

S. Pons, J. Sallette, J. Bourgeois, A. Taly, J. Changeux et al., Critical role of the C-terminal segment in the maturation and export to the cell surface of the homopentameric alpha7-5HT3A receptor, European Journal of Neuroscience, vol.53, issue.8, pp.2022-2052, 2004.
DOI : 10.1038/352064a0
URL : https://hal.archives-ouvertes.fr/pasteur-00163458

A. Taly, P. Sebban, J. Smith, and G. Ullmann, The Position of QB in the Photosynthetic Reaction Center Depends on pH: A Theoretical Analysis of the Proton Uptake upon QB Reduction, Biophysical Journal, vol.84, issue.3, 2003.
DOI : 10.1016/S0006-3495(03)75016-4

A. Taly, L. Baciou, and P. Sebban, The DMPC lipid phase transition influences differently the first and the second electron transfer reactions in bacterial reaction centers, FEBS Letters, vol.811, issue.1-2, pp.91-96, 2002.
DOI : 10.1021/bi010280a

L. Gerencser, A. Taly, L. Baciou, P. Maroti, and P. Sebban, The effect of binding of Cd 2+ on Bacterial Reaction Center mutants: proton transfer uses interdependent pathways, Biochemistry ACTIVITES COLLECTIVES, vol.41, issue.29, pp.9132-9140, 2002.