A. Banos and C. Lang, Agent-Based Spatial Simulation with NetLogo : Introduction and Bases, 2015.

A. Banos and C. Lang, Simulation À Base D'agent Avec Netlogo, ISTE, vol.1, 2015.

F. Amblard, E. Daudé, B. Gaudou, A. Grignard, G. Hutzler et al., Introduction to NetLogo, Simulation À Base D'agent Avec Netlogo, pp.71-110, 2015.
DOI : 10.1016/B978-1-78548-055-3.50003-4

F. Amblard, E. Daudé, B. Gaudou, A. Grignard, G. Hutzler et al., Introduction to NetLogo, Simulation À Base D'agent Avec Netlogo, pp.71-110, 2015.
DOI : 10.1016/B978-1-78548-055-3.50003-4

A. Banos, A. Boffet-mas, S. Chardonnel, C. Lang, N. Marilleau et al., MIRO, Des Trajectoires Individuelles À La Ville En Mouvement, Modéliser La Ville : Formes Urbaines et Politiques de Transport, pp.216-261, 2010.
URL : https://hal.archives-ouvertes.fr/halshs-00698695

A. Banos, A. Boffet-mas, S. Chardonnel, C. Lang, N. Marilleau et al., Simuler La Mobilité Urbaine Quotidienne : Le Projet MIRO, Mobilités Urbaines et Risques Des Transports - Approches Géographiques, pp.51-86, 2010.

A. Banos, P. Caillou, B. Gaudou, and N. Marilleau, Exploration de Modèles Agent, Simulation À Base D'agent Avec Netlogo, pp.111-59

I. Becu, F. Nicolas, N. Amblard, B. Gaudou, and N. Marilleau, How to Involve Stakeholders in the Modeling Process, Simulation À Base D'agent Avec Netlogo, ISTE, pp.199-223, 2015.
DOI : 10.1016/B978-1-78548-055-3.50006-X

URL : https://hal.archives-ouvertes.fr/halshs-01453327

N. Becu, F. Amblard, N. , B. Gaudou, and N. Marilleau, Vers Des Modèles Multi-Acteurs, Simulation À Base D'agent Avec Netlogo, pp.199-223, 2015.

F. Bouquet, S. Chipeaux, C. Lang, N. Marilleau, and P. Taillandier, Introduction À L'approche Agent, Simulation À Base D'agent Avec Netlogo, pp.13-34, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01246023

F. Bouquet, D. Sheeren, N. Becu, B. Gaudou, N. Lang et al., Description Formalisms in Agent Models, Description Formalisms in Agent Models, pp.29-73, 2015.
DOI : 10.1016/B978-1-78548-055-3.50002-2

URL : https://hal.archives-ouvertes.fr/halshs-01453397

F. Bouquet, D. Sheeren, N. Becu, B. Gaudou, N. Lang et al., Formalismes de Description Des Modèles, Simulation À Base D'agent Avec Netlogo, ISTE, pp.35-69, 2015.

. Gaudou, N. Benoit, T. Marilleau, and . Ho, Toward a Methodology of Collaborative Modeling and Simulation of Complex Systems, Intelligent Networking, Collaborative Systems and Applications, pp.27-53, 2011.
DOI : 10.1007/978-3-642-16793-5_2

G. Laville, C. Lang, B. Herrmann, L. Philippe, and K. Mazouzi, Franche-Comte Computing Center, and Nicolas MarilleauImplementing Multi-Agent Systems on GPU, Designing Scientific Applications on GPUs, pp.415-455

E. Blanchart, N. Marilleau, J. Chotte, A. Drogoul, E. Perrier et al., SWORM: an agent-based model to simulate the effect of earthworms on soil structure, European Journal of Soil Science, vol.61, issue.1, pp.13-21, 2009.
DOI : 10.1111/j.1365-2389.2008.01091.x

P. Fosset, A. Banos, E. Beck, S. Chardonnel, C. Lang et al., Exploring Intra-Urban Accessibility and Impacts of Pollution Policies with an Agent-Based Simulation Platform: GaMiroD, Systems, vol.4, issue.1, 2016.
DOI : 10.3390/systems4010005

URL : https://hal.archives-ouvertes.fr/halshs-01424773

A. Lammoglia, D. Josselin, and N. Marilleau, Propositions m??thodologiques pour identifier des conditions optimales de simulation de transport flexible par un Model ?? Base d???Agents, Cybergeo, p.2015
DOI : 10.4000/cybergeo.27046

G. Laville, C. Lang, B. Herrmann, L. Philippe, K. Mazouzi et al., MCMAS: A toolkit for developing agent-based simulations on many-core architectures, Multiagent and Grid Systems, vol.11, issue.1, pp.15-31, 2015.
DOI : 10.3233/MGS-150227

N. Marilleau, C. Cambier, A. Drogoul, J. Chotte, E. Perrier et al., Multiscale MAS Modelling to Simulate the Soil Environment : Application to Soil Ecology. Simulation Modelling Practice and Theory, pp.736-781, 2008.
DOI : 10.1016/j.simpat.2008.04.021

N. Marilleau, C. Lang, P. Chatonnay, and L. Philippe, RAFALE-SP : A Methodology to Design and Simulate Geographical Mobility, Stud. Inform. Univ, vol.10, issue.1, pp.38-76, 2012.

H. Thierry, D. Sheeren, N. Marilleau, N. Corson, M. Amalric et al., From the Lotka???Volterra model to a spatialised population-driven individual-based model, Ecological Modelling, vol.306, pp.287-93, 2015.
DOI : 10.1016/j.ecolmodel.2014.09.022

URL : https://hal.archives-ouvertes.fr/hal-01094650

E. Blanchart, C. Cambier, C. Canape, B. Gaudou, T. Ho et al., EPIS: A Grid Platform to Ease and Optimize Multi-agent Simulators Running, Advances on Practical Applications of Agents and Multiagent Systems, pp.129-163
DOI : 10.1007/978-3-642-19875-5_17

URL : https://hal.archives-ouvertes.fr/lirmm-00744257

N. Bécu, M. Amalric, B. Anselme, E. Beck, X. Bertin et al., Cécilia Pignon-Mussaud and Frédéric Rousseaux "Participatory simulation of coastal flooding : building social learning on prevention measures with decision-makers, International Environmental Modelling and Software, p.2016

S. Chipeaux, F. Bouquet, C. Lang, and N. Marilleau, Modelling of Complex Systems with AML as Realized in MIRO Project, 2011 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology, pp.159-62, 2011.
DOI : 10.1109/WI-IAT.2011.195

A. Drogoul, E. Amouroux, P. Caillou, B. Gaudou, A. Grignard et al., GAMA: A Spatially Explicit, Multi-level, Agent-Based Modeling and Simulation Platform, Advances on Practical Applications of Agents and Multi-Agent Systems, pp.271-74
DOI : 10.1007/978-3-642-38073-0_25

URL : https://hal.archives-ouvertes.fr/hal-00834494

A. Drogoul, E. Amouroux, P. Caillou, B. Gaudou, A. Grignard et al., GAMA : Multi-Level and Complex Environment for Agent-Based Models and Simulations, Proceedings of the 2013 International Conference on Autonomous Agents and Multi-Agent Systems International Foundation for Autonomous Agents and Multiagent Systems, pp.1361-62
URL : https://hal.archives-ouvertes.fr/hal-00834498

I. Hassoumi, C. Lang, N. Marilleau, M. Temani, K. Ghedira et al., Toward a Spatially-Centered Approach to Integrate Heterogeneous and Multi-scales Urban Component Models, Advances on Practical Applications of Agents and Multi-Agent Systems, pp.81-86
DOI : 10.1007/978-3-642-28786-2_9

N. Ho-the-nhan, L. Marilleau, H. Philippe, J. Nguyen, and . Zucker, A Grid-Based Multistage Algorithm for Parameter Simulation- Optimization of Complex System, Computing and Communication Technologies, Research, Innovation, and Vision for the Future (RIVF), 2013 IEEE RIVF International Conference on, pp.221-247

G. Laville, K. Mazouzi, C. Lang, N. Marilleau, B. Herrmann et al., MCMAS: A Toolkit to Benefit from Many-Core Architecure in Agent-Based Simulation, Euro-Par 2013 : Parallel Processing Workshops, pp.544-54
DOI : 10.1007/978-3-642-54420-0_53

G. Laville, K. Mazouzi, C. Lang, N. Marilleau, and L. Philippe, Using GPU for Multi-agent Multi-scale Simulations, Advances in Intelligent and Soft ComputingBase ISI, pp.197-204
DOI : 10.1007/978-3-642-28765-7_23

URL : https://hal.archives-ouvertes.fr/hal-01304681

G. Laville, K. Mazouzi, C. Lang, L. Philipppe, and N. Marilleau, Using GPU for Multi-Agent Soil Simulation, 2013 21st Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, pp.392-99
DOI : 10.1109/PDP.2013.63

URL : https://hal.archives-ouvertes.fr/hal-01228110

A. Laatabi, N. Marilleau, T. Nguyen-huu, H. Hbid, and M. Babram, Formalizing Data to Agent Model Mapping Using MOF: Application to a Model of Residential Mobility in Marrakesh, Marrakesh In Agent and Multi-Agent Systems : Technology and Applications, pp.107-117, 2016.
DOI : 10.1007/978-3-319-39883-9_9

L. Laurent, C. Lang, N. Marilleau, and L. Philippe, Multiagent Hybrid Architecture for Collaborative Exchanges between Communicating Vehicles in an Urban Context. ANT/SEIT, pp.695-699

N. Marilleau, An Agent Based Meta-Model For Urban Mobility Modeling, First International Conference on Distributed Frameworks for Multimedia Applications, pp.168-75, 2005.
DOI : 10.1109/DFMA.2005.11

N. Marilleau, C. Cambier, A. Drogoul, J. Chotte, E. Perrier et al., Environnement Multi-Échelles À Base de Fractales Pour La Modélisation Agent D'écosystèmes, JFSMA, pp.23-32, 2008.

N. Marilleau, C. Lang, P. Chatonnay, and L. Philippe, A meta-model of group for urban mobility modeling, Proceedings of the 2005 International Conference on Active Media Technology, 2005. (AMT 2005)., pp.397-400, 2005.
DOI : 10.1109/AMT.2005.1505380

N. Marilleau, C. Lang, P. Chatonnay, and L. Philippe, An agent based framework for urban mobility simulation, 14th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP'06), 2006.
DOI : 10.1109/PDP.2006.19

URL : https://hal.archives-ouvertes.fr/hal-00563624

N. Marilleau, C. Lang, P. Chatonnay, and L. Philippe, Cognitive Perception in RAFALE-SP Methodology, International Conference on Computational Intelligence for Modelling, Control and Automation and International Conference on Intelligent Agents, Web Technologies and Internet Commerce (CIMCA-IAWTIC'06), pp.594-99, 2005.
DOI : 10.1109/CIMCA.2005.1631533

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.79.9349

T. Nguyen, . Khanh, . Gaudou, T. Benoit, N. Vinh-ho et al., Introduce Collaboration in Methodologies of Modeling and Simulation of Complex Systems, Intelligent Networking and Collaborative Systems INCOS'09. International Conference onBase ISI, pp.1-8, 2009.

T. Nguyen, N. Khanh, T. Marilleau, and . Ho, PAMS ??? A New Collaborative Framework for Agent-Based Simulation of Complex Systems, Intelligent Agents and Multi-Agent Systems, pp.287-94, 2008.
DOI : 10.1007/978-3-540-89674-6_32

T. Nguyen, N. Khanh, T. Marilleau, . Vinh-ho, and . Fallah, Method supporting collaboration in complex system participatory simulation, Proceedings of the Fourth Symposium on Information and Communication Technology, SoICT '13, pp.61-70
DOI : 10.1145/2542050.2542076

T. Nguyen, N. Khanh, T. Marilleau, . Vinh-ho, and . Fallah, New protocol supporting collaborative simulation, Proceedings of the Second Symposium on Information and Communication Technology, SoICT '11, pp.137-182
DOI : 10.1145/2069216.2069244

URL : https://hal.archives-ouvertes.fr/hal-00741756

T. Nguyen, N. Khanh, T. Marilleau, A. Vinh-ho, and . Seghrouchni, A Meta-Model for Specifying Collaborative Simulation, 2010 IEEE RIVF International Conference on Computing & Communication Technologies, Research, Innovation, and Vision for the Future (RIVF), pp.1-4, 2010.
DOI : 10.1109/RIVF.2010.5634008

URL : https://hal.archives-ouvertes.fr/hal-00741753

V. Pretre, C. Lang, J. Lapayre, and N. Marilleau, A Video Transmission Framework Using Components and Multi-Agent Systems, The 2nd International Conference on Distributed Frameworks for Multimedia Applications, pp.1-7, 2006.
DOI : 10.1109/DFMA.2006.296901

URL : https://hal.archives-ouvertes.fr/hal-00563625

K. Trong, B. Nguyen, T. Gaudou, N. Vinh-ho, and . Marilleau, Application of Pams Collaboration Platform to Simulation-Based Researches in Soil Science : The Case of the Micro-Organism Project, Computing and Communication Technologies RIVF'09. International Conference onBase ISI, pp.1-8, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00741738

P. Damien, A. Drogoul, N. Marilleau, B. Gaudou, M. Choisy et al., Exploring trade and health policies influence on Dengue spread with an Agent-Based Model, Multi-Agent-Based Simulation Workshop, p.2016

T. Patrick, A. Banos, A. Drogoul, B. Gaudou, N. Marilleau et al., Simulating Urban Growth with Raster and Vector models : A case study for the city of Can Tho, Vietnam, ABMUS, Singapour, p.2016

A. Banos, S. Chardonnel, C. Lang, N. Marilleau, and T. Thévenin, Simulating the Swarm City : A MAS Approach, CUPUM'05 Conference on Computers in Urban Planning and Urban Management, pp.1-17, 2005.
URL : https://hal.archives-ouvertes.fr/halshs-00081802

A. Banos, S. Chardonnel, C. Lang, N. Marilleau, and T. Thévenin, Modéliser et Simuler ?La Fourmilière Urbaine? Par Les Systèmes Multi-Agent, In Colloque SAGEO, pp.1-21, 2005.

A. Banos and N. Marilleau, MIRO Team : Improving Individual Accessibility to the City : An Agent-Based Modelling Approach, Proc. Of ECCS Colloque SMAGET, pp.1-17, 2005.

G. Beurier, . Cambier, . Marilleau, R. Perrier, and . Duponnois, Agent-Based Models to Address the Spatial Complexity of Biological and Physical Interactions in Soils, EGU General Assembly Conference Abstracts, p.12598, 2009.

S. Chardonnel, T. Thévenin, A. Banos, N. Marilleau, and C. Lang, Exploring Activities for Simulating Everyday Rythms and Routines in French Urban Areas, Association of American Geographers Conference, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00764498

J. Emery, N. Marilleau, T. Thevenin, and N. Martiny, Du Comptage Ponctuel À L'affectation Par Simulation Multi-Agents : Application À La Circulation Routière de La Ville de Dijon, Conférence Internationale de Géomatique et D'analyse Spatiale (SAGEO), CD-ROM, 2014.

J. Emery, N. Marilleau, N. Martiny, and T. Thevenin, L'apport de La Simulation Multi-Agent Du Trafic Routier Pour L'estimation Des Émissions Automobiles

J. Emery, J. Boyard-micheau, and N. Marilleau, Nadège Martiny, Thomas Thévenin, and othersExploitation of Traffic Counting Data for Traffic Study in Urban Areas : From Traffic Assignment to Simulation Model Validation, 18th European Colloquium in Theoretical and Quantitative Geography (ECTQG), 2013.

D. Josselin, A. Lammoglia, and N. Marilleau, Using a Multi- Agent-System to Assess the Sensitivity of a Flexible Transport, Transport Research Arena (TRA) 5th Conference : Transport Solutions from Research to Deployment, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01100479

A. Lammoglia, N. Marilleau, and D. Josselin, How to Assess the Robustness of a Flexible Transport Using an Agent Based Model : Some Observations on Optimal Conditions of Simulation, 2011.
URL : https://hal.archives-ouvertes.fr/halshs-00858280

S. Leguedois, E. Blanchart, N. Marilleau, C. Cambier, Y. Capowiez et al., SWORM : Un Outil Pour La Modélisation Du Système Complexe Sol-Macrofaune. Vers Une Application Pour L'optimisation Des Techniques de Réhabilitation de Sol Par Construction, 1. Conférence Modélisation Mathématique et Informatique Des Systèmes Complexes CoMMISCo'10, 2010.

S. Leguédois, N. Marilleau, C. Cambier, Y. Capowiez, J. Cortet et al., A 3D Multi-Scale Virtual Structure to Model and Simulate Concurrent Processes of Soil Evolution, 4. International Congress Eurosoil 2012-Soil Science for the Benefit of Mankind and Environment, pp.2012-2019, 2012.

S. Leguedois, N. Marilleau, J. Rémi, T. , N. Jangorzo et al., Évaluation Du Modèle APSF Pour Représenter La Structure Des Sols et Sa Dynamique, pp.2013-2015, 2013.

N. Marilleau, C. Lang, P. Chatonnay, and L. Philippe, Un Méta-Modèle À Base D'agents Pour Modéliser La Mobilité Urbaine, 3 Éme Conférence International : SETIT, Tunisie, 2005.

N. Marilleau, C. Lang, and P. Giraudoux, Modélisation Agents Des Phénomènes Écologiques Spatialisés, Journées de Modélisation Biomathématique de Besançon, 2015.

N. Marilleau, H. Quang, N. , and J. Zucker, Couplage D'algorithmes D'optimisation Par Un SMA Pour L'exploration
URL : https://hal.archives-ouvertes.fr/hal-01074484

F. Amblard and D. Phan, Modélisation et simulation multi-agents, Science informatique et SHS, 2006.

J. Antoni and G. Vuidel, Mobisim : un modèle multi-agents et multiscalaire pour simuler les mobilités urbaines, Modéliser la ville. Forme urbaine et politiques de transport, pp.50-77, 2010.

M. Armatte, Models in social sciences: old and new mining, Math??matiques et sciences humaines, vol.172, issue.172, 2005.
DOI : 10.4000/msh.2962

G. Jeffrey, . Arnold, N. Daniel, . Moriasi, W. Philip et al., Swat : Model use, calibration, and validation, Transactions of the ASABE, vol.55, issue.4, pp.1491-1508, 2012.

W. Muhammad-usman-awais, A. Mueller, P. Elsheikh, E. Palensky, and . Widl, Using the hla for distributed continuous simulations, Modelling and Simulation (EUROSIM), 2013 8th EUROSIM Congress on, pp.544-549, 2013.

R. Axelrod, Advancing the art of simulation in the social sciences, Simulating social phenomena, pp.21-40, 1997.

T. Babey, J. Dreuzy, M. Pinhiero, P. Garnier, L. Vieublé et al., Modeling the impact of heterogeneous spatial distribution of soil microbes on pesticide biodegradation at the centimeter scale, American Geophysical Union Fall Meeting, p.2015, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01246659

A. Banos, Pour des pratiques de modélisation et de simulation libérées en géographie et SHS, 2013.

A. Banos, S. Chardonnel, C. Lang, N. Marilleau, and T. Thévenin, Simulating the swarming city : a mas approach, Proceedings of the 9th International Conference on Computers in Urban Planning and Urban Management, pp.29-30, 2005.

A. Banos, N. Corson, B. Gaudou, V. Laperrière, and S. R. Coyrehourcq, Coupling Micro and Macro Dynamics Models on Networks: Application to Disease Spread, International Workshop on Multi-Agent Systems and Agent-Based Simulation, pp.19-33, 2015.
DOI : 10.1007/978-3-319-31447-1_2

URL : https://hal.archives-ouvertes.fr/hal-01140145

A. Banos, C. Lang, and N. Marilleau, Simulation spatiale à base d'agents avec NetLogo 1 : introduction et bases. iste-editions, 2015.

A. Banos, N. Marilleau, and . Miro-team, Improving individual accessibility to the city, Proceedings of the European Conference on Complex Systems 2012, pp.989-992, 2013.

N. Becu, F. Amblard, N. Brax, B. Gaudou, and N. Marilleau, Vers des modèles multi-acteurs. In Simulation spatiale à base d'agents avec NetLogo 1 : introduction et bases, ISTE, pp.201-225, 2015.

N. Becu, N. Frascaria-lacoste, and J. Latune, Experiential learning based on the newdistrict asymmetric simulation game : results of a dozen gameplay sessions, Hybrid Simulation & Gaming in the Networked Society : The 46th ISAGA Annual Conference 2015, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01253024

J. Bergez and . Garcia, Record : an integrated framework to build, evaluate and simulate cropping systems, Agro2010'the 11th ESA Congress. Agropolis International Editions, pp.929-930, 2010.

E. Blanchart, C. Cambier, C. Canape, B. Gaudou, T. Ho et al., EPIS: A Grid Platform to Ease and Optimize Multi-agent Simulators Running, Advances on Practical Applications of Agents and Multiagent Systems, pp.129-134, 2011.
DOI : 10.1007/978-3-642-19875-5_17

URL : https://hal.archives-ouvertes.fr/lirmm-00744257

E. Blanchart, N. Marilleau, J. Chotte, A. Drogoul, E. Perrier et al., SWORM: an agent-based model to simulate the effect of earthworms on soil structure, European Journal of Soil Science, vol.61, issue.1, pp.13-21, 2009.
DOI : 10.1111/j.1365-2389.2008.01091.x

J. Blot, C. Pierdet, L. Rajaonarivo, and C. Cambier, Impact of climate and urban changes on health risk : presentation of a research methodology on the spread of dengue in phnom penh (cambodia) and can tho (vietnam), SEAGA international conference, Geography that matters, 2014.

S. Bogomolov, M. Greitschus, G. Peter, . Jensen, G. Kim et al., Co-Simulation of Hybrid Systems with SpaceEx and Uppaal, Proceedings of the 11th International Modelica Conference, Versailles, France, September 21-23, 2015, pp.159-169, 2015.
DOI : 10.3384/ecp15118159

P. Bommel and N. Bécu, Christophe Le Page, and François Bousquet. an agent-based simulation platform for coupling human decisions with computerized dynamics, the 46th ISAGA conference, pp.6-18, 2015.

F. Bousquet, I. Bakam, H. Proton, and C. L. Page, Cormas: Common-pool resources and multi-agent systems, International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems, pp.826-837, 1998.
DOI : 10.1007/3-540-64574-8_469

N. Bécu, M. Amalric, B. Anselme, E. Beck, X. Bertin et al., Cécilia Pignon-Mussaud, and Frédéric Rousseaux. Participatory simulation of coastal flooding : building social learning on prevention measures with decision-makers, 8th International Congress on Environmental Modelling and Software, 2016.

B. Calvez and G. Hutzler, Automatic Tuning of Agent-Based Models Using Genetic Algorithms, Proceedings of the 6th international conference on Multi-Agent-Based Simulation, MABS'05, pp.41-57, 2006.
DOI : 10.1007/11734680_4

URL : https://hal.archives-ouvertes.fr/hal-00340480

C. Champagne, G. David, R. Salthouse, . Paul, B. Van-mai-cao-lormeau et al., Structure in the variability of the basic reproductive number (r0) for zika epidemics in the pacific islands. bioRxiv, p.64949, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01487852

L. Chapel, G. Deffuant, S. Martin, and C. Mullon, Defining yield policies in a viability approach, Ecological Modelling, vol.212, issue.1-2, pp.10-15, 2008.
DOI : 10.1016/j.ecolmodel.2007.10.007

URL : https://hal.archives-ouvertes.fr/hal-00454451

L. Chin, . Worth, . Greenough, . Coakley, M. Holcombe et al., Flame-ii : a redesign of the flexible large-scale agent-based modelling environment, 2012.

S. Chipeaux, Génération automatique de systèmes multi-agents à partir de modèle pour la simulation de systèmes complexes géographiques à entités mobiles - Application au projet Micro 2, 2013.

S. Coakley, M. Gheorghe, M. Holcombe, S. Chin, D. Worth et al., Exploitation of High Performance Computing in the FLAME Agent-Based Simulation Framework, 2012 IEEE 14th International Conference on High Performance Computing and Communication & 2012 IEEE 9th International Conference on Embedded Software and Systems, pp.538-545, 2012.
DOI : 10.1109/HPCC.2012.79

N. Collier and M. North, Repast HPC: A Platform for Large-Scale Agent-Based Modeling, 2011.
DOI : 10.1002/9781118130506.ch5

N. Collier, J. Ozik, M. Charles, and . Macal, Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model, European Conference on Parallel Processing, pp.454-465, 2015.
DOI : 10.1007/978-3-319-27308-2_37

C. Commod, La mod??lisation comme outil d'accompagnement, Natures Sciences Soci??t??s, vol.13, issue.2, pp.165-168, 2005.
DOI : 10.1051/nss:2005023

P. Coquillard, R. David, T. Hill, and . Sime-ngando, Modélisation et simulation d'écosystèmes : des modèles déterministes aux simulations à évènements discrets, 1997.

G. Deffuant, A. Banos, D. Chavalarias, C. Bertelle, N. Brodu et al., Visions de la complexit??. Le d??mon de Laplace dans tous ses ??tats, Natures Sciences Soci??t??s, vol.23, issue.1, pp.42-53, 2015.
DOI : 10.1051/nss/2015007

G. Deffuant, A. Banos, D. Chavalarias, C. Bertelle, N. Brodu et al., Visions de la complexit??. Le d??mon de Laplace dans tous ses ??tats, Natures Sciences Soci??t??s, vol.23, issue.1, pp.42-53, 2015.
DOI : 10.1051/nss/2015007

. Hadja-maïmouna-diagne, Distribution de l'application sworm, 2010.

A. Drogoul, E. Amouroux, P. Caillou, B. Gaudou, A. Grignard et al., GAMA : multi-level and complex environment for agent-based models and simulations (demonstration), international conference on Autonomous agents and multi-agent systems, pp.1361-1362, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00834498

B. Edmonds and S. Moss, From KISS to KIDS ??? An ???Anti-simplistic??? Modelling Approach, MABS 2004, pp.130-144, 2004.
DOI : 10.1007/978-3-540-32243-6_11

A. Clarence, . Ellis, J. Simon, G. Gibbs, and . Rein, Groupware : some issues and experiences, Communications of the ACM, vol.34, issue.1, pp.39-58, 1991.

J. Emery, N. Marilleau, N. Martiny, and T. Thévenin, Julien Villery, and AASQA Atmosf ?air Bourgogne. L ?apport de la simulation multi-agent du trafic routier pour l ?estimation des pollutions atmosphériques automobiles, 2015.

M. Étienne, La modélisation d'accompagnement : une démarche participative en appui au développement durable, Editions Quae, 2010.

J. Ferber, Multi-agent systems -an introduction to distributed artificial intelligence, 1999.

N. Ferrand, S. Farolfi, G. Abrami, and D. D. Toit, Wat-a-game : sharing water and policies in your own basin, Learn to Game, Game to Learn ?, International Simulation And Gaming Association 40th Annual Conference. Citeseer, 2009.
URL : https://hal.archives-ouvertes.fr/hal-01355501

S. Fontaine and S. Barot, Size and functional diversity of microbe populations control plant persistence and long-term soil carbon accumulation, Ecology Letters, vol.25, issue.10, pp.1075-1087, 2005.
DOI : 10.1111/j.1461-0248.2005.00813.x

P. Fosset, A. Banos, E. Beck, S. Chardonnel, C. Lang et al., Exploring Intra-Urban Accessibility and Impacts of Pollution Policies with an Agent-Based Simulation Platform: GaMiroD, Systems, vol.4, issue.1, p.5, 2016.
DOI : 10.3390/systems4010005

URL : https://hal.archives-ouvertes.fr/halshs-01424773

M. Fowler, Domain-specific languages. Pearson Education, 2010.

F. Gascuel, M. Choisy, J. Duplantier, F. Débarre, and C. Brouat, Host Resistance, Population Structure and the Long-Term Persistence of Bubonic Plague: Contributions of a Modelling Approach in the Malagasy Focus, PLoS Computational Biology, vol.205, issue.5, p.1003039, 2013.
DOI : 10.1371/journal.pcbi.1003039.s013

M. J. Gibson, E. C. Keedwell, and A. Dragan, An investigation of the efficient implementation of cellular automata on multi-core CPU and GPU hardware, Journal of Parallel and Distributed Computing, vol.77, pp.11-25, 2015.
DOI : 10.1016/j.jpdc.2014.10.011

J. Ginoux, Stabilité de Systèmes Dynamiques Chaotiques et Variétés Singulières, 2005.

V. Grimm, U. Berger, L. Donald, . Deangelis, J. Gary-polhill et al., The ODD protocol: A review and first update, Ecological Modelling, vol.221, issue.23, pp.2760-2768, 2010.
DOI : 10.1016/j.ecolmodel.2010.08.019

P. M. Groffman and C. G. Jones, Soil processes and global change: will invertebrates make a difference?, Invertebrates as webmasters in ecosystems, pp.313-326, 2000.
DOI : 10.1079/9780851993942.0313

H. Morales-grosskopf, . Jf-tourrand, . Bartaburu, . Dieguez, . Bommel et al., Use of simulations to enhance knowledge integration and livestock producers??? adaptation to variability in the climate in northern Uruguay, The Rangeland Journal, vol.37, issue.4, pp.425-432, 2015.
DOI : 10.1071/RJ14063

I. Hassoumi, Approche multi-agents de couplage de modèles pour la modélisation des systèmes complexes spatiaux : application à l'aménagement urbain de la ville de Métouia. (Coupling multi-agent based approach for modeling spatial complex systems : application to urban planning of the city of Metouia), 2015.

I. Hassoumi, Coupling multi-agent based approach for modeling spatial complex systems : application to urban planning of the city of Metouia. Theses, 2015.
URL : https://hal.archives-ouvertes.fr/tel-01212713

I. Hassoumi, C. Lang, N. Marilleau, M. Temani, K. Ghédira et al., Toward a Spatially-Centered Approach to Integrate Heterogeneous and Multi-scales Urban Component Models, Advances on Practical Applications of Agents and Multi-Agent Systems -10th International Conference on Practical Applications of Agents and Multi-Agent Systems, PAAMS 2012, pp.28-30, 2012.
DOI : 10.1007/978-3-642-28786-2_9

E. Hermann, B. Raffin, F. Faure, T. Gautier, and J. Allard, Multi-GPU and Multi-CPU Parallelization for Interactive Physics Simulations, European Conference on Parallel Processing, pp.235-246, 2010.
DOI : 10.1007/978-3-642-15291-7_23

URL : https://hal.archives-ouvertes.fr/inria-00502448

E. Hermellin and F. Michel, Toward a methodology for developing mabs using gpu programming, To appear in Proceedings of the 15th International Joint Conference on Autonomous Agents and Multiagent Systems (AAMAS 2016), p.page full paper. IFAAMAS, 2016.

S. Hiwa, T. Hiroyasu, and M. Miki, Hybrid optimization using direct, ga, and sqp for global exploration, Evolutionary Computation, pp.1709-1716, 2007.

. The-nhan and . Ho, Exploration et apprentissage parallélisée de paramètres de la simulation multiagents haute performance de systèmes complexes pour l'aide a la décision environnementale, 2016.

D. Jacques, F. Gérard, U. Mayer, J. Simunek, and B. Leterme, Generic reactive transport codes as flexible tools to integrate soil organic matter degradation models with water, transport and geochemistry in soils, EGU General Assembly Conference Abstracts, p.14182, 2016.

D. Jenkinson and L. Parry, The nitrogen cycle in the broadbalk wheat experiment: A model for the turnover of nitrogen through the soil microbial biomass, Soil Biology and Biochemistry, vol.21, issue.4, pp.535-541, 1989.
DOI : 10.1016/0038-0717(89)90127-2

L. Lamport, Time, clocks, and the ordering of events in a distributed system, Communications of the ACM, vol.21, issue.7, pp.558-565, 1978.
DOI : 10.1145/359545.359563

G. Laville, Exécution efficace de systèmes Multi-Agents sur GPU, Thèse de doctorat dirigée par Philippe, 2014.

G. Laville, K. Mazouzi, C. Lang, L. Philippe, and N. Marilleau, Using GPU for Multi-Agent Soil Simulation, 2013 21st Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, pp.392-399, 2013.
DOI : 10.1109/PDP.2013.63

URL : https://hal.archives-ouvertes.fr/hal-01228110

J. Alfred and . Lotka, Elements of physical biology, reprinted 1956 as elements of mathematical biology, 1924.

N. Marilleau, C. Cambier, A. Drogoul, J. Chotte, E. Perrier et al., Multiscale mas modelling to simulate the soil environment : Application to soil ecology. Simulation Modelling Practice and Theory, pp.736-745, 2008.
DOI : 10.1016/j.simpat.2008.04.021

N. Marilleau, C. Lang, P. Chatonnay, and L. Philippe, Rafale-sp : a methodology to design and simulate geographical mobility. Stud, Inform. Univ, vol.10, issue.1, pp.38-76, 2012.

D. Masse, C. Cambier, A. Brauman, S. Sall, K. Assigbetse et al., MIOR: an individual-based model for simulating the spatial patterns of soil organic matter microbial decomposition, European Journal of Soil Science, vol.64, issue.5, pp.1127-1135, 2007.
DOI : 10.1126/science.1097394

URL : https://hal.archives-ouvertes.fr/ird-00190929

K. Mayer, . Amos, F. Molins, and . Gerard, Reactive transport modeling in variably saturated media with min3p : Basic model formulation and model enhancements, Groundwater Reactive Transport Models, pp.186-211, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01268625

A. Ameur-medjbeur, S. Leguedois, N. Marilleau, N. Bredèche, and F. Watteau, Modélisation en 3d de la structure d ?un sol : Analyse de sensibilité et évaluation de l ?approche apsf, p.page np, 2014.

G. Meurant, The ecology of natural disturbance and patch dynamics. Academic press, 2012.

F. Michel, Approches environnement-centrées pour la simulation de systèmes multi-agents. Pour un déplacement de la complexité des agents vers l'environnement, 2015.

E. Morin, Sur l ?interdisciplinarité. Bulletin interactif du Centre international de recherches et études transdisciplinaires, 1994.

J. Muller, La notion de cadre conceptuel de modélisation : penser la place des ontologies dans le processus de modélisation, 16èmes Journées de Rochebrune. Rencontres Interdisciplinaires sur les Systèmes Complexes Naturels et Artificiels "Ontologie et dynamique des systèmes complexes, p.11, 2009.

D. James and . Murray, Mathematical biology i : An introduction, 2002.

L. Susan, . Neitsch, . Williams, J. Arnold, and . Kiniry, Soil and water assessment tool theoretical documentation version 2009, Texas Water Resources Institute, 2011.

N. Trong-khanh-nguyen, T. Marilleau, and . Ho, Pams?a new collaborative framework for agent-based simulation of complex systems, Pacific Rim International Conference on Multi-Agents, pp.287-294, 2008.

N. Trong-khanh-nguyen, T. Marilleau, . Vinh-ho, and . Fallah, Method supporting collaboration in complex system participatory simulation, Proceedings of the Fourth Symposium on Information and Communication Technology, pp.61-70, 2013.

T. Khanh-nguyen, Elaboration d ?un processus et conception d ?outils pour introduire la collaboration dans la simulation

J. Michael, . North, T. Nicholson, J. Collier, . Ozik et al., Complex adaptive systems modeling with repast simphony. Complex adaptive systems modeling, p.1, 2013.

M. J. North, N. T. Collier, and J. R. Vos, Experiences creating three implementations of the repast agent modeling toolkit, ACM Transactions on Modeling and Computer Simulation, vol.16, issue.1, pp.1-25, 2006.
DOI : 10.1145/1122012.1122013

M. Occello, J. Koning, and C. Baeijis, Conception des système multi-agent : quelques éléments de réflexion méthodologique. Technique et science informatique, pp.233-263, 2001.

M. Pansu, L. Bottner, and . Sarmiento, Micro-organismes et matière organique du sol (modèle momos) : bilan de 20 ans de modélisation basée sur le traçage isotopique in situ, Etude et Gestion des Sols, vol.16, pp.213-232, 2009.

E. Perrier, N. Bird, and M. Rieu, Generalizing the fractal model of soil structure: the pore???solid fractal approach, Geoderma, vol.88, issue.3-4, pp.137-164, 1999.
DOI : 10.1016/S0016-7061(98)00102-5

D. Philippon, M. Choisy, A. Drogoul, B. Gaudou, N. Marilleau et al., Exploring trade and health policies influence on dengue spread with an agent-based model [89] Centre pour la recherche et l'innovation dans l'enseignement (Paris). and Leo Apostel . L Interdisciplinarité : problèmes d'enseignement et de recherche dans les Universités (rapport fondé sur les résultats d'un séminaire organisé par le CERI en collab, 7th International Workshop on Multi-Agent-Based Simulation, pp.84-98, 1970.

D. Powlson, J. Smith, and . Smith, Evaluation of soil organic matter models. nato ansi series, Global Environmental Change, vol.38, 1996.

G. Quesnel, R. Duboz, D. Versmisse, and E. Ramat, Devs coupling of spatial and ordinary differential equations : Vle framework, OICIMS, vol.5, pp.281-294, 2005.

D. Reed, Parallel discrete event simulation : The chandy-misra approach, SCS Multiconference on Distributed Simulation, pp.8-13, 1988.

R. Reuillon, M. Leclaire, and S. Rey-coyrehourcq, OpenMOLE, a workflow engine specifically tailored for the distributed exploration of simulation models, Future Generation Computer Systems, vol.29, issue.8, pp.1981-1990, 2013.
DOI : 10.1016/j.future.2013.05.003

URL : https://hal.archives-ouvertes.fr/hal-00840744

A. Rousset, B. Herrmann, C. Lang, L. Philippe, and H. Bride, Using nested graphs to distribute parallel and distributed multi-agent systems, international conference on Parallel, Distributed, and Network-Based Processing (PDP2016). Conference Publishing Services (CPS), 2016.
URL : https://hal.archives-ouvertes.fr/hal-01305991

C. Sanogo, B. Miled, and N. Raissi, Viability Analysis of Multi-fishery, Acta Biotheoretica, vol.60, issue.1-2, pp.189-207, 2012.
DOI : 10.1007/s10441-012-9153-5

B. Sareni, Multimodal optimization methods related to numerical modeling in electromagnetics, 1999.
URL : https://hal.archives-ouvertes.fr/tel-00139202

C. Schmitt, Modeling settlements systems dynamics : from SimpopLocal to SimpopNet . Theses, Université Panthéon-Sorbonne -Paris I, 2014.
URL : https://hal.archives-ouvertes.fr/tel-01077891

S. Smit and A. Eiben, Comparing parameter tuning methods for evolutionary algorithms, 2009 IEEE Congress on Evolutionary Computation, pp.399-406, 2009.
DOI : 10.1109/CEC.2009.4982974

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.216.9933

J. Forrest and . Stonedahl, Genetic Algorithms for the Exploration of Parameter Spaces in Agent-Based Models, 2011.

P. Taillandier, GAMAGraM : Modélisation Graphique sous GAMA, Masyco 2013, 2013.

H. Thierry, D. Sheeren, N. Marilleau, N. Corson, M. Amalric et al., From the Lotka???Volterra model to a spatialised population-driven individual-based model, Ecological Modelling, vol.306, pp.287-293, 2013.
DOI : 10.1016/j.ecolmodel.2014.09.022

URL : https://hal.archives-ouvertes.fr/hal-01094650

J. Treuil, A. Drogoul, and J. Zucker, Modélisation et simulation à base d'agents, Exemples commentés, outils informatiques et questions théoriques. Dunod, 2008.

F. Varenne, M. Silberstein, S. Dutreuil, and P. Huneman, Modéliser et simuler : épistémologies et pratiques de la modélisation et de la simulation, 2014.

V. Volterra, Une théorie mathématique de la lutte pour la vie, Scientia, vol.21, issue.41, p.33, 1927.

V. Volterra, Variations and Fluctuations of the Number of Individuals in Animal Species living together, ICES Journal of Marine Science, vol.3, issue.1, pp.3-51, 1928.
DOI : 10.1093/icesjms/3.1.3

B. Walkiewicz, L???interdisciplinarit?? dans la traduction sp??cialis??e, Studia Romanica Posnaniensia, vol.43, issue.1, pp.125-141, 2016.
DOI : 10.14746/strop.2016.425.009

URL : http://doi.org/10.14746/strop.2016.425.009

U. Wilensky and W. Rand, An introduction to agent-based modeling : modeling natural, social, and engineered complex systems with NetLogo, 2015.

Y. Yan and B. Chapman, Comparative study of distributed resource management systems?sge, lsf, pbs pro, and loadleveler, 2008.

P. Bernard and . Zeigler, Hierarchical, modular discrete-event modelling in an objectoriented environment, Simulation, vol.49, issue.5, pp.219-230, 1987.

P. Bernard, Y. Zeigler, D. Moon, G. Kim, and . Ball, The devs environment for high-performance modeling and simulation, IEEE Computational Science & Engineering, vol.4, issue.3, pp.61-71, 1997.