E. Abbe, Beitr??ge zur Theorie des Mikroskops und der mikroskopischen Wahrnehmung, Archiv f??r Mikroskopische Anatomie, vol.9, issue.1, pp.413-418, 1873.
DOI : 10.1007/BF02956173

S. A. Alexandrov, T. R. Hillman, T. Gutzler, and D. D. Sampson, Synthetic aperture fourier holographic optical microscopy. Physical review letters, p.97168102, 2006.

M. Atlan, M. Gross, P. Desbiolles, É. Absil, G. Tessier et al., Heterodyne holographic microscopy of gold particles, Optics Letters, vol.33, issue.5, pp.500-502, 2008.
DOI : 10.1364/OL.33.000500.m001

URL : https://hal.archives-ouvertes.fr/hal-00194121

J. Bailleul, B. Simon, M. Debailleul, H. Liu, and O. Haeberlé, GPU acceleration towards real-time image reconstruction in 3D tomographic diffractive microscopy, Real-Time Image and Video Processing 2012, pp.843707-843707, 2012.
DOI : 10.1117/12.922147

A. Baldi, Two-dimensional phase unwrapping by quad-tree decomposition, Applied Optics, vol.40, issue.8, pp.1187-1194, 2001.
DOI : 10.1364/AO.40.001187

J. F. Biegen, Interferometric surface profiler, US Patent, vol.4869, p.593, 1989.

G. Binnig, C. F. Quate, and C. Gerber, Atomic force microscope. Physical review letters, p.930, 1986.

G. Binnig and H. Rohrer, Scanning tunneling microscopy, IBM Journal of Research and Development, vol.44, issue.1.2, pp.279-293, 2000.
DOI : 10.1147/rd.441.0279

G. Binnig, H. Rohrer, C. Gerber, and E. Weibel, Tunneling through a controllable vacuum gap, Applied Physics Letters, vol.40, issue.2, pp.178-180, 1982.
DOI : 10.1063/1.92999

P. Bon, G. Maucort, B. Wattellier, and S. Monneret, Quadriwave lateral shearing interferometry for quantitative phase microscopy of living cells, Optics Express, vol.17, issue.15, pp.1713080-13094, 2009.
DOI : 10.1364/OE.17.013080.m002

URL : https://hal.archives-ouvertes.fr/hal-00424664

M. Born and E. Wolf, Principles of optics : electromagnetic theory of propagation , interference and diffraction of light, 1999.
DOI : 10.1017/CBO9781139644181

U. Breitmeier and R. Ahlers, Dynamically focusing electro-optical sensor-system for micro rofilometry, Hague International Symposium, pp.170-175, 1987.

R. Brodmann and W. Smilga, Evaluation of a commercial microtopography sensor, Hague International Symposium International Society for Optics and Photonics, pp.165-169, 1987.

C. Burch and J. Stock, Phase-Contrast Microscopy, Journal of Scientific Instruments, vol.19, issue.5, p.71, 1942.
DOI : 10.1088/0950-7671/19/5/302

X. Cai, Reduction of speckle noise in the reconstructed image of digital holography, Optik - International Journal for Light and Electron Optics, vol.121, issue.4, pp.394-399, 2010.
DOI : 10.1016/j.ijleo.2008.07.026

F. Charrière, A. Marian, F. Montfort, J. Kuehn, T. Colomb et al., Cell refractive index tomography by digital holographic microscopy, Optics Letters, vol.31, issue.2, pp.31178-180, 2006.
DOI : 10.1364/OL.31.000178

Y. Cheng and J. C. Wyant, Two-wavelength phase shifting interferometry, Applied Optics, vol.23, issue.24, pp.4539-4543, 1984.
DOI : 10.1364/AO.23.004539

W. Choi, C. Fang-yen, K. Badizadegan, S. Oh, N. Lue et al., Tomographic phase microscopy, Nature Methods, vol.102, issue.9, pp.717-719, 2007.
DOI : 10.1038/nmeth1078

URL : https://works.bepress.com/cfangyen/13/download/

T. Colomb, J. Kühn, F. Charrière, C. Depeursinge, P. Marquet et al., Total aberrations compensation in digital holographic microscopy with a reference conjugated hologram, Optics Express, vol.14, issue.10, p.144300, 2006.
DOI : 10.1364/OE.14.004300.m001

P. S. Considine, Effects of Coherence on Imaging Systems*, Journal of the Optical Society of America, vol.56, issue.8, pp.1001-1007, 1966.
DOI : 10.1364/JOSA.56.001001

Y. Cotte, F. Toy, P. Jourdain, N. Pavillon, D. Boss et al., Marker-free phase nanoscopy, Nature Photonics, vol.20, issue.2, pp.113-117, 2013.
DOI : 10.1038/nphoton.2012.329

K. Creath, Step height measurement using two-wavelength phase-shifting interferometry, Applied Optics, vol.26, issue.14, pp.2810-2816, 1987.
DOI : 10.1364/AO.26.002810

R. Dändliker and K. Weiss, Reconstruction of the three-dimensional refractive index from scattered waves, Optics Communications, vol.1, issue.7, pp.323-328, 1970.
DOI : 10.1016/0030-4018(70)90032-5

M. Debailleul, V. Georges, B. Simon, R. Morin, and O. Haeberlé, High-resolution three-dimensional tomographic diffractive microscopy of transparent inorganic and biological samples, Optics Letters, vol.34, issue.1, pp.79-81, 2009.
DOI : 10.1364/OL.34.000079

URL : https://hal.archives-ouvertes.fr/hal-00453711

M. Debailleul, B. Simon, V. Georges, O. Haeberlé, and V. Lauer, Holographic microscopy and diffractive microtomography of transparent samples, Measurement Science and Technology, vol.19, issue.7, p.74009, 2008.
DOI : 10.1088/0957-0233/19/7/074009

URL : https://hal.archives-ouvertes.fr/hal-00869405

C. Ding, K. Yang, W. Li, W. Guo, X. Zhang et al., Application of diffraction tomography theory to determine size and shape of spheroidal particles from light scattering, Optics & Laser Technology, vol.62, issue.10, pp.62135-140, 2014.
DOI : 10.1016/j.optlastec.2014.03.003

F. Dubois, N. Callens, C. Yourassowsky, M. Hoyos, P. Kurowski et al., Digital holographic microscopy with reduced spatial coherence for threedimensional particle flow analysis, Applied optics, issue.5, pp.45864-871, 2006.

F. Dubois, N. Requena, M. Minetti, C. Monnom, O. Istasse et al., Partial spatial coherence effects in digital holographic microscopy with a laser source, Applied Optics, vol.43, issue.5, pp.431131-1139, 2004.
DOI : 10.1364/AO.43.001131

V. B. Elings and J. A. Gurley, Tapping atomic force microscope with phase or frequency detection, p.488, 2000.

P. Feng, X. Wen, L. , and R. , Long-working-distance synthetic aperture Fresnel off-axis digital holography, Optics Express, vol.17, issue.7, pp.5473-5480, 2009.
DOI : 10.1364/OE.17.005473

P. Ferraro, S. De-nicola, A. Finizio, G. Coppola, S. Grilli et al., Compensation of the inherent wave front curvature in digital holographic coherent microscopy for quantitative phase-contrast imaging, Applied Optics, vol.42, issue.11, pp.421938-1946, 2003.
DOI : 10.1364/AO.42.001938

D. Gabor, A New Microscopic Principle, Nature, vol.161, issue.4098, pp.161777-778, 1948.
DOI : 10.1038/161777a0

J. Garcia-sucerquia, J. A. Ramírez, and D. V. Prieto, Reduction of speckle noise in digital holography by using digital image processing, Optik - International Journal for Light and Electron Optics, vol.116, issue.1, pp.44-48, 2005.
DOI : 10.1016/j.ijleo.2004.12.004

J. J. Gierloff, Phase Unwrapping By Regions, Current Developments in Optical Engineering II, pp.2-9, 1987.
DOI : 10.1117/12.967466

R. M. Goldstein, H. A. Zebker, W. , and C. L. , Satellite radar interferometry: Two-dimensional phase unwrapping, Radio Science, vol.178, issue.4, pp.713-720, 1988.
DOI : 10.1029/RS023i004p00713

F. C. Groen, I. T. Young, and G. Ligthart, A comparison of different focus functions for use in autofocus algorithms, Cytometry, vol.64, issue.2, pp.81-91, 1985.
DOI : 10.1002/cyto.990060202

O. Haeberlé, K. Belkebir, H. Giovaninni, and A. Sentenac, Tomographic diffractive microscopy: basics, techniques and perspectives, Journal of Modern Optics, vol.92, issue.9, pp.686-699, 2010.
DOI : 10.1126/science.1127344

M. A. Herráez, D. R. Burton, M. J. Lalor, and M. A. Gdeisat, Fast twodimensional phase-unwrapping algorithm based on sorting by reliability following a noncontinuous path, Applied Optics, issue.35, pp.417437-7444, 2002.

T. R. Hillman, T. Gutzler, S. A. Alexandrov, and D. D. Sampson, Highresolution , wide-field object reconstruction with synthetic aperture fourier holographic optical microscopy, Optics Express, issue.10, pp.177873-7892, 2009.

J. Huntley, Noise-immune phase unwrapping algorithm, Applied Optics, vol.28, issue.16, pp.3268-3270, 1989.
DOI : 10.1364/AO.28.003268

X. Kang, An effective method for reducing speckle noise in digital holography, Chinese Optics Letters, vol.6, issue.2, pp.100-103, 2008.
DOI : 10.3788/COL20080602.0100

M. Kim, Tomographic three-dimensional imaging of a biological specimen using wavelength-scanning digital interference holography, Optics Express, vol.7, issue.9, pp.305-310, 2000.
DOI : 10.1364/OE.7.000305.m004

M. K. Kim, Principles and techniques of digital holographic microscopy, Journal of Photonics for Energy, pp.18005-018005, 2010.
DOI : 10.1117/6.0000006.4

T. Kim, R. Zhou, M. Mir, S. D. Babacan, P. S. Carney et al., White-light diffraction tomography of unlabelled live cells, Nature Photonics, vol.8, issue.3, 2014.
DOI : 10.1007/BF02546511

J. Kühn, F. Charrière, T. Colomb, E. Cuche, F. Montfort et al., Axial sub-nanometer accuracy in digital holographic microscopy, Measurement Science and Technology, vol.19, issue.7, p.74007, 2008.
DOI : 10.1088/0957-0233/19/7/074007

J. Kühn, F. Montfort, T. Colomb, B. Rappaz, C. Moratal et al., Submicrometer tomography of cells by multiple-wavelength digital holographic microscopy in reflection, Optics Letters, vol.34, issue.5, pp.653-655, 2009.
DOI : 10.1364/OL.34.000653

V. Lauer, New approach to optical diffraction tomography yielding a vector equation of diffraction tomography and a novel tomographic microscope, Journal of Microscopy, vol.205, issue.2, pp.165-176, 2002.
DOI : 10.1046/j.0022-2720.2001.00980.x

URL : https://hal.archives-ouvertes.fr/hal-00869524

E. N. Leith and J. Upatnieks, Reconstructed Wavefronts and Communication Theory*, Journal of the Optical Society of America, vol.52, issue.10, pp.521123-1128, 1962.
DOI : 10.1364/JOSA.52.001123

Y. Lin and C. Cheng, Provisionally scheduled for Sectional imaging of spatially refractive index distribution using coaxial rotation digital holographic microtomography, Journal of Optics, 2014.

I. Lyuboshenko, Wavefront analysis : Digital wavefront sensors boost resolution , sensing options wavefront-analysis-digital-wavefront-sensors-boost-resolution-sensing-options, 2009.

D. Malacara, Optical shop testing, 2007.
DOI : 10.1002/9780470135976

J. H. Massig, Digital off-axis holography with a synthetic aperture, Optics Letters, vol.27, issue.24, pp.2179-2181, 2002.
DOI : 10.1364/OL.27.002179

J. Maycock, B. M. Hennelly, J. B. Mcdonald, Y. Frauel, A. Castro et al., Reduction of speckle in digital holography by discrete Fourier filtering, Journal of the Optical Society of America A, vol.24, issue.6, pp.241617-1622, 2007.
DOI : 10.1364/JOSAA.24.001617

V. Mico, Z. Zalevsky, P. García-martínez, and J. García, Synthetic aperture superresolution with multiple off-axis holograms, Journal of the Optical Society of America A, vol.23, issue.12, pp.3162-3170, 2006.
DOI : 10.1364/JOSAA.23.003162

F. Montfort, T. Colomb, F. Charrière, J. Kühn, P. Marquet et al., Submicrometer optical tomography by multiplewavelength digital holographic microscopy, Applied optics, issue.32, pp.458209-8217, 2006.

P. M. Morse and H. Feshbach, What is a Method?, Qualitative Health Research, vol.6, issue.4, pp.809-820, 1953.
DOI : 10.1177/104973239600600401

E. Mudry, P. Chaumet, K. Belkebir, G. Maire, and A. Sentenac, Mirrorassisted tomographic diffractive microscopy with isotropic resolution, Optics letters, issue.11, pp.351857-1859, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00484543

F. Natterer, Reflectors in wave equation imaging, Wave Motion, vol.45, issue.6, pp.776-784, 2008.
DOI : 10.1016/j.wavemoti.2008.01.001

T. Noda, S. Kawata, and S. Minami, Three-dimensional phase-contrast imaging by a computed-tomography microscope, Applied Optics, vol.31, issue.5, pp.31670-674, 1992.
DOI : 10.1364/AO.31.000670

G. Nomarski, Microinterféromètre différentiel à ondes polarisés, J. phys. radium, issue.9S, p.16, 1955.

T. Nomura, M. Okamura, E. Nitanai, and T. Numata, Image quality improvement of digital holography by superposition of reconstructed images obtained by multiple wavelengths, Applied Optics, vol.47, issue.19, pp.47-85, 2008.
DOI : 10.1364/AO.47.000D38

M. Paturzo, F. Merola, S. Grilli, S. De-nicola, A. Finizio et al., Super-resolution in digital holography by a two-dimensional dynamic phase grating, Optics Express, vol.16, issue.21, pp.1617107-17118, 2008.
DOI : 10.1364/OE.16.017107

J. Pawley, Handbook of biological confocal microscopy, 2010.

C. Y. Poon and B. Bhushan, Comparison of surface roughness measurements by stylus profiler, AFM and non-contact optical profiler, Wear, vol.190, issue.1, pp.76-88, 1995.
DOI : 10.1016/0043-1648(95)06697-7

K. N. Prettyjohns and J. C. Wyant, Optical profiler using improved phase shifting interferometry, US Patent, vol.4639, p.139, 1987.

W. Qu, C. O. Choo, V. R. Singh, Y. Yingjie, and A. Asundi, Quasi-physical phase compensation in digital holographic microscopy, Journal of the Optical Society of America A, vol.26, issue.9, pp.2005-2011, 2009.
DOI : 10.1364/JOSAA.26.002005

J. Quiroga and A. Gonzalez-cano, Phase measuring algorithm for extraction of isochromatics of photoelastic fringe patterns, Applied Optics, vol.36, issue.32, pp.8397-8402, 1997.
DOI : 10.1364/AO.36.008397

M. Radmacher, M. Fritz, C. M. Kacher, J. P. Cleveland, and P. K. Hansma, Measuring the viscoelastic properties of human platelets with the atomic force microscope, Biophysical Journal, vol.70, issue.1, pp.556-567, 1996.
DOI : 10.1016/S0006-3495(96)79602-9

F. Roddier, Curvature sensing and compensation: a new concept in adaptive optics, Applied Optics, vol.27, issue.7, pp.1223-1225, 1988.
DOI : 10.1364/AO.27.001223

V. Ronchi, Forty Years of History of a Grating Interferometer, Applied Optics, vol.3, issue.4, pp.437-451, 1964.
DOI : 10.1364/AO.3.000437

L. Rong, W. Xiao, F. Pan, S. Liu, L. et al., Speckle noise reduction in digital holography by use of multiple polarization holograms, Chinese Optics Letters, vol.8, issue.7, pp.653-655, 2010.
DOI : 10.3788/COL20100807.0653

M. Sarmis, B. Simon, M. Debailleul, B. Colicchio, V. Georges et al., High resolution reflection tomographic diffractive microscopy, Journal of Modern Optics, vol.57, issue.9, pp.740-745, 2010.
DOI : 10.1364/OE.16.000161

URL : https://hal.archives-ouvertes.fr/hal-00827964

G. Schulz and K. Elssner, Errors in phase-measurement interferometry with high numerical apertures, Applied Optics, vol.30, issue.31, pp.4500-4506, 1991.
DOI : 10.1364/AO.30.004500

J. Schwider, Phase shifting interferometry: reference phase error reduction, Applied Optics, vol.28, issue.18, pp.3889-3892, 1989.
DOI : 10.1364/AO.28.003889

J. Schwider, R. Burow, K. Elssner, J. Grzanna, R. Spolaczyk et al., Digital wave-front measuring interferometry: some systematic error sources, Applied Optics, vol.22, issue.21, pp.223421-3432, 1983.
DOI : 10.1364/AO.22.003421

K. Seo, Y. Choi, E. Seo, L. , and S. , Aberration compensation for objective phase curvature in phase holographic microscopy, Optics Letters, vol.37, issue.23, pp.4976-4978, 2012.
DOI : 10.1364/OL.37.004976

R. V. Shack and B. Platt, Production and use of a lenticular hartmann screen, In Journal of the Optical Society of America AMER INST PHYSICS CIRCULATION FULFILLMENT DIV, vol.61, pp.656-11797, 1971.

A. Sharma, G. Sheoran, and Z. Jaffery, Improvement of signal-to-noise ratio in digital holography using wavelet transform, Optics and Lasers in Engineering, vol.46, issue.1, pp.42-47, 2008.
DOI : 10.1016/j.optlaseng.2007.07.004

B. Simon, Application des techniques de déconvolution multinoyaux et de tomographie diffractiveoptique à l'amélioration de l'imagerie microscopique 2D et 3D, 2007.

B. Simon, M. Debailleul, V. Georges, V. Lauer, and O. Haeberlé, Tomographic diffractive microscopy of transparent samples, The European Physical Journal Applied Physics, vol.44, issue.1, p.29, 2008.
DOI : 10.1051/epjap:2008049

URL : https://hal.archives-ouvertes.fr/hal-00869566

G. E. Sommargren, Optical heterodyne profilometry, Applied Optics, vol.20, issue.4, pp.610-618, 1981.
DOI : 10.1364/AO.20.000610

A. Stadelmaier and J. H. Massig, Compensation of lens aberrations in digital holography, Optics Letters, vol.25, issue.22, p.251630, 2000.
DOI : 10.1364/OL.25.001630

A. C. Sullivan and R. R. Mcleod, Tomographic reconstruction of weak, replicated index structures embedded in a volume, Optics Express, vol.15, issue.21, pp.1514202-14212, 2007.
DOI : 10.1364/OE.15.014202

M. Takeda, H. Ina, and S. Kobayashi, Fourier-transform method of fringe-pattern analysis for computer-based topography and interferometry, Journal of the Optical Society of America, vol.72, issue.1, pp.156-160, 1982.
DOI : 10.1364/JOSA.72.000156

D. Towers, T. Judge, and P. Bryanston-cross, <title>A Quasi Heterodyne Holographic Technique And Automatic Algorithms For Phase Unwrapping</title>, Fringe Pattern Analysis, pp.95-119, 1989.
DOI : 10.1117/12.962786

S. Velghe, J. Primot, N. Guérineau, M. Cohen, and B. Wattellier, Wave-front reconstruction from multidirectional phase derivatives generated by multilateral shearing interferometers, Optics Letters, vol.30, issue.3, pp.245-247, 2005.
DOI : 10.1364/OL.30.000245

S. Vertu, J. Delaunay, I. Yamada, and O. Haeberlé, Diffraction microtomography with sample rotation : influence of a missing apple core in the recorded frequency space, Central European Journal of Physics, vol.7, issue.1, pp.22-31, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00868388

D. Whitehouse, Surface metrology, Measurement Science and Technology, vol.8, issue.9, p.955, 1997.
DOI : 10.1088/0957-0233/8/9/002

E. Wolf, Three-dimensional structure determination of semi-transparent objects from holographic data, Optics Communications, vol.1, issue.4, pp.153-156, 1969.
DOI : 10.1016/0030-4018(69)90052-2

I. Yamaguchi and T. Zhang, Phase-shifting digital holography, Optics Letters, vol.22, issue.16, pp.1268-1270, 1997.
DOI : 10.1364/OL.22.001268

F. Zernike, Phase contrast, a new method for the microscopic observation of transparent objects part II, Physica, vol.9, issue.10, pp.974-986, 1942.
DOI : 10.1016/S0031-8914(42)80079-8

Q. Zhong, D. Inniss, K. Kjoller, and V. Elings, Fractured polymer/silica fiber surface studied by tapping mode atomic force microscopy, Surface Science Letters, vol.290, issue.1, pp.688-692, 1993.