. Expandinsum=holdpattern, OutnInSum= Sum[Times[a__,o:(Power[n,p_]|n|_Integer)],l__List]:>o Sum, Times

. Dummiinsum=holdpattern, :>Sum[m x,y,z]; SumProduct= {HoldPattern[Times[Sum[a_ ,y___List],Sum[b, HoldPattern[Sum[a_ Sum[b

E. Abbe, Beitrüge zur theorie des mikroskops und der mikroskopischen wahrnehmung, Archiv für mikroskopische Anatomie, pp.413-418, 1873.

Y. Aït-sahalia, Maximum Likelihood Estimation of Discretely Sampled Diffusions: A Closed-form Approximation Approach, Econometrica, vol.70, issue.1, pp.223-262, 2002.
DOI : 10.1111/1468-0262.00274

A. C. Aitken, IV.???On Least Squares and Linear Combination of Observations., Proceedings of the Royal Society of Edinburgh, vol.lxiv, pp.42-48, 1934.
DOI : 10.1214/aoms/1177732930

F. Andrade, A. M. Pinho, M. Ribeiro, C. F. Carreira, P. Roy et al., Immunization Against Active Ghrelin Using Virus-Like Particles for Obesity Treatment, Current Pharmaceutical Design, vol.19, issue.36, pp.6551-6558, 2013.
DOI : 10.2174/13816128113199990506

D. G. Angelescu and P. Linse, Viruses as supramolecular self-assemblies: modelling of capsid formation and genome packaging, Soft Matter, vol.75, issue.102, 1981.
DOI : 10.1039/b802597e

C. E. Ashley, E. C. Carnes, G. K. Phillips, P. N. Durfee, M. D. Buley et al., Cell-Specific Delivery of Diverse Cargos by Bacteriophage MS2 Virus-like Particles, ACS Nano, vol.5, issue.7, pp.5729-5745, 2011.
DOI : 10.1021/nn201397z

M. Badieirostami, M. D. Lew, M. A. Thompson, and W. E. Moerner, Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane, Applied Physics Letters, vol.97, issue.16, p.161103, 2010.
DOI : 10.1063/1.3499652

J. B. Bancroft, The Self-Assembly Of Spherical Plant Viruses, " in Advances in Virus Research, ser Advances in Virus, pp.99-134, 1970.

J. B. Bancroft, G. J. Hills, and R. Markham, A study of the self-assembly process in a small spherical virus formation of organized structures from protein subunits in vitro, Virology, vol.31, issue.2, pp.354-379, 1967.
DOI : 10.1016/0042-6822(67)90180-8

M. Bates, B. Huang, G. T. Dempsey, and X. Zhuang, Multicolor Super-Resolution Imaging with Photo-Switchable Fluorescent Probes, Science, vol.317, issue.5845, pp.1749-1753, 2007.
DOI : 10.1126/science.1146598

M. Bates, B. Huang, and X. Zhuang, Super-resolution microscopy by nanoscale localization of photo-switchable fluorescent probes, Current Opinion in Chemical Biology, vol.12, issue.5, pp.505-519, 2008.
DOI : 10.1016/j.cbpa.2008.08.008

E. Betzig, G. H. Patterson, R. Sougrat, O. W. Lindwasser, S. Olenych et al., Imaging Intracellular Fluorescent Proteins at Nanometer Resolution, Science, vol.313, issue.5793, pp.1642-1647, 2006.
DOI : 10.1126/science.1127344

M. Bladt and M. Sorensen, Statistical inference for discretely observed Markov jump processes, Journal of the Royal Statistical Society: Series B (Statistical Methodology), vol.11, issue.3, pp.395-410, 2005.
DOI : 10.1093/biomet/88.3.603

M. Bossi, J. Fölling, V. N. Belov, V. P. Boyarskiy, R. Medda et al., Multicolor Far-Field Fluorescence Nanoscopy through Isolated Detection of Distinct Molecular Species, Nano Letters, vol.8, issue.8, pp.2463-2468, 2008.
DOI : 10.1021/nl801471d

J. A. Briggs and H. Kräusslich, The Molecular Architecture of HIV, Journal of Molecular Biology, vol.410, issue.4, pp.491-500, 2011.
DOI : 10.1016/j.jmb.2011.04.021

J. A. Briggs, T. Wilk, R. Welker, H. Kräusslich, and S. D. Fuller, Structural organization of authentic, mature HIV-1 virions and cores, The EMBO Journal, vol.22, issue.7, pp.1707-1722, 2003.
DOI : 10.1093/emboj/cdg143

J. A. Briggs, M. N. Simon, I. Gross, H. Kräusslich, S. D. Fuller et al., The stoichiometry of Gag protein in HIV-1, Nature Structural & Molecular Biology, vol.11, issue.7, pp.672-677, 2004.
DOI : 10.1128/JVI.75.6.2753-2764.2001

J. A. Briggs, M. C. Johnson, M. N. Simon, S. D. Fuller, and V. M. Vogt, Cryo-electron Microscopy Reveals Conserved and Divergent Features of Gag Packing in Immature Particles of Rous Sarcoma Virus and Human Immunodeficiency Virus, Journal of Molecular Biology, vol.355, issue.1, pp.157-168, 2006.
DOI : 10.1016/j.jmb.2005.10.025

M. A. Bruckman, J. Liu, G. Koley, Y. Li, B. Benicewicz et al., Tobacco mosaic virus based thin film sensor for detection of volatile organic compounds, Journal of Materials Chemistry, vol.88, issue.27, pp.5715-5719, 2010.
DOI : 10.1039/c0jm00634c

L. Carlson, J. A. Briggs, B. Glass, J. D. Riches, M. N. Simon et al., Three-Dimensional Analysis of Budding Sites and Released Virus Suggests a Revised Model for HIV-1 Morphogenesis, Cell Host & Microbe, vol.4, issue.6, pp.592-601, 2008.
DOI : 10.1016/j.chom.2008.10.013

L. Carlson, A. De-marco, H. Oberwinkler, A. Habermann, J. A. Briggs et al., Cryo Electron Tomography of Native HIV-1 Budding Sites, PLoS Pathogens, vol.116, issue.Pt 11, p.1001173, 2010.
DOI : 10.1371/journal.ppat.1001173.s001

M. Carrillo-tripp, C. M. Shepherd, I. A. Borelli, S. Venkataraman, G. Lander et al., VIPERdb2: an enhanced and web API enabled relational database for structural virology, Nucleic Acids Research, vol.37, issue.Database, pp.436-442, 1998.
DOI : 10.1093/nar/gkn840

D. Caspar and A. Klug, Physical Principles in the Construction of Regular Viruses, Cold Spring Harbor Symposia on Quantitative Biology, vol.27, issue.0, pp.1-24, 1962.
DOI : 10.1101/SQB.1962.027.001.005

M. Castellanos, R. Pérez, C. Carrasco, M. Hernando-pérez, J. Gómez-herrero et al., Mechanical elasticity as a physical signature of conformational dynamics in a virus particle, Proceedings of the National Academy of Sciences, vol.109, issue.30, pp.12-028, 2012.
DOI : 10.1073/pnas.1207437109

M. Castelnovo, T. Verdier, and L. Foret, Comparing open and closed molecular selfassembly, EPLEurophysics Letters), vol.105, 2014.
DOI : 10.1209/0295-5075/105/28006
URL : https://hal.archives-ouvertes.fr/ensl-00947536

J. Castón, Conventional electron microscopy, cryo-electron microscopy and cryoelectron tomography of viruses, Structure and Physics of Viruses, pp.79-115978

S. Chandrasekhar, Stochastic Problems in Physics and Astronomy, Reviews of Modern Physics, vol.15, issue.1, pp.1-89, 1943.
DOI : 10.1103/RevModPhys.15.1

B. A. Craig and P. P. Sendi, estimating the transition matrix of an homogeneous markov chain, 1998.

F. H. Crick and J. D. Watson, Structure of Small Viruses, Nature, vol.172, issue.4506, pp.473-475, 1956.
DOI : 10.1016/0006-3002(55)90288-2

D. Crommelin and E. Vanden-eijnden, Fitting timeseries by continuous-time Markov chains: A quadratic programming approach, Journal of Computational Physics, vol.217, issue.2, pp.782-805, 2006.
DOI : 10.1016/j.jcp.2006.01.045

R. J. De-boer, R. M. Ribeiro, and A. S. Perelson, Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues, PLoS Computational Biology, vol.4, issue.9, p.1000906, 2010.
DOI : 10.1371/journal.pcbi.1000906.t002

P. Dedecker, G. C. Mo, T. Dertinger, and J. Zhang, Widely accessible method for superresolution fluorescence imaging of living systems, Proceedings of the National Academy of Sciences, pp.10-909, 2012.

M. Deserno, Elastic deformation of a fluid membrane upon colloid binding, Physical Review E, vol.69, issue.3, p.31903, 2004.
DOI : 10.1103/PhysRevE.69.031903

B. Efron and D. V. Hinkley, Assessing the accuracy of the maximum likelihood estimator: Observed versus expected Fisher information, Biometrika, vol.65, issue.3, pp.457-483, 1978.
DOI : 10.1093/biomet/65.3.457

N. Elia, R. Sougrat, T. A. Spurlin, J. H. Hurley, and J. Lippincott-schwartz, Dynamics of endosomal sorting complex required for transport (ESCRT) machinery during cytokinesis and its role in abscission, Proceedings of the National Academy of Sciences, vol.108, issue.12, pp.4846-51, 2011.
DOI : 10.1073/pnas.1102714108

O. M. Elrad and M. F. Hagan, Encapsulation of a polymer by an icosahedral virus, Physical Biology, vol.7, issue.4, p.45003, 2010.
DOI : 10.1088/1478-3975/7/4/045003

D. Endres and A. Zlotnick, Model-Based Analysis of Assembly Kinetics for Virus Capsids or Other Spherical Polymers, Biophysical Journal, vol.83, issue.2, pp.1217-1247, 2002.
DOI : 10.1016/S0006-3495(02)75245-4

D. Endres, M. Miyahara, P. Moisant, and A. Zlotnick, A reaction landscape identifies the intermediates critical for self-assembly of virus capsids and other polyhedral structures Protein science : a publication of the, pp.1518-1543, 2005.

J. Finch and A. Klug, Structure of Poliomyelitis Virus, Nature, vol.23, issue.4677, pp.1709-1714, 1959.
DOI : 10.1039/df9582500197

R. A. Fisher, On the Mathematical Foundations of Theoretical Statistics, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.222, pp.594-604, 1922.

J. E. Fitzgerald, J. Lu, and M. J. Schnitzer, Estimation Theoretic Measure of Resolution for Stochastic Localization Microscopy, Physical Review Letters, vol.109, issue.4, p.48102, 2012.
DOI : 10.1103/PhysRevLett.109.048102

J. Flusser and T. Suk, Rotation Moment Invariants for Recognition of Symmetric Objects, IEEE Transactions on Image Processing, vol.15, issue.12, pp.3784-3790, 2006.
DOI : 10.1109/TIP.2006.884913

L. Foret, Shape and energy of a membrane bud induced by protein coats or viral protein assembly, The European Physical Journal E, vol.144, issue.5, p.42, 2014.
DOI : 10.1140/epje/i2014-14042-1

L. Foret and P. Sens, Kinetic regulation of coated vesicle secretion, Proceedings of the National Academy of Sciences, vol.105, issue.39, pp.14-763, 2008.
DOI : 10.1073/pnas.0801173105

H. Fraenkel-conrat and R. C. Williams, RECONSTITUTION OF ACTIVE TOBACCO MOSAIC VIRUS FROM ITS INACTIVE PROTEIN AND NUCLEIC ACID COMPONENTS, Proceedings of the National Academy of Sciences, vol.41, issue.10, pp.690-698, 1955.
DOI : 10.1073/pnas.41.10.690

B. K. Ganser-pornillos, M. Yeager, and W. I. Sundquist, The structural biology of HIV assembly, opinion in structural biology, pp.1-24, 2008.
DOI : 10.1016/j.sbi.2008.02.001

B. Ganser-pornillos, M. Yeager, and O. Pornillos, Assembly and Architecture of HIV, Advances in Experimental Medicine and Biology, vol.726, pp.441-465, 2012.
DOI : 10.1007/978-1-4614-0980-9_20

D. T. Gillespie, A general method for numerically simulating the stochastic time evolution of coupled chemical reactions, Journal of Computational Physics, vol.22, issue.4, pp.403-434, 1976.
DOI : 10.1016/0021-9991(76)90041-3

D. Gillespie, Exact stochastic simulation of coupled chemical reactions, The Journal of Physical Chemistry, vol.81, issue.25, pp.2340-2361, 1977.
DOI : 10.1021/j100540a008

B. Goncharov, Integral geometry and three-dimensional reconstruction of randomly oriented identical particles from their electron microphotos, Acta Applicandae Mathematicae, vol.11, issue.No. 3, pp.199-211, 1988.
DOI : 10.1007/BF00140118

H. G. Göttlinger, T. Dorfman, J. G. Sodroski, and W. Haseltine, Effect of mutations affecting the p6 gag protein on human immunodeficiency virus particle release., Proceedings of the National Academy of Sciences, vol.88, issue.8, pp.3195-3199, 1991.
DOI : 10.1073/pnas.88.8.3195

A. T. Gres, K. A. Kirby, V. N. Kewalramani, J. J. Tanner, O. Pornillos et al., X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability, Science, vol.349, issue.6243, pp.99-103, 2015.
DOI : 10.1126/science.aaa5936

J. Guizetti and D. W. Gerlich, ESCRT-III polymers in membrane neck constriction, Trends in cell biology, pp.133-173, 2012.
DOI : 10.1016/j.tcb.2011.11.007

J. Guizetti, L. Schermelleh, J. Mäntler, S. Maar, I. Poser et al., Cortical Constriction During Abscission Involves Helices of ESCRT-III-Dependent Filaments, Science, vol.331, issue.6024, pp.1616-1636, 2011.
DOI : 10.1126/science.1201847

J. Gunzenhäuser, N. Olivier, T. Pengo, and S. A. Manley, Quantitative Super-Resolution Imaging Reveals Protein Stoichiometry and Nanoscale Morphology of Assembling HIV-Gag Virions, Nano Letters, vol.12, issue.9, pp.1-8, 2012.
DOI : 10.1021/nl3021076

M. F. Hagan, Controlling Viral Capsid Assembly with Templating Physical review. E, Statistical, nonlinear, and soft matter physics, p.51904, 2008.

P. R. Halmos, The Theory of Unbiased Estimation, The Annals of Mathematical Statistics, vol.17, issue.1, pp.34-43, 1946.
DOI : 10.1214/aoms/1177731020

W. Helfrich, Abstract, Zeitschrift f??r Naturforschung C, vol.28, issue.11-12, pp.693-703, 1973.
DOI : 10.1515/znc-1973-11-1209

S. T. Hess, T. P. Girirajan, and M. D. Mason, Ultra-High Resolution Imaging by Fluorescence Photoactivation Localization Microscopy, Biophysical Journal, vol.91, issue.11, pp.4258-4272, 2006.
DOI : 10.1529/biophysj.106.091116

S. T. Hess, T. J. Gould, M. V. Gudheti, S. Maas, K. D. Mills et al., Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories, Proceedings of the National Academy of Sciences, vol.104, issue.44, pp.17-370, 2007.
DOI : 10.1073/pnas.0708066104

. Hu, Visual pattern recognition by moment invariants, IEEE Transactions on Information Theory, vol.8, issue.2, pp.179-187, 1962.

B. Huang, W. Wang, M. Bates, and X. Zhuang, Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy, Science, vol.319, issue.5864, pp.810-813, 2008.
DOI : 10.1126/science.1153529

S. Ivanchenko, W. J. Godinez, M. Lampe, H. Kräusslich, R. Eils et al., Dynamics of HIV-1 Assembly and Release, PLoS Pathogens, vol.13, issue.11, 2009.
DOI : 10.1371/journal.ppat.1000652.s016

N. P. Johnson and J. Mueller, Updating the Accounts: Global Mortality of the 1918-1920 "Spanish" Influenza Pandemic, Bulletin of the History of Medicine, vol.76, issue.1, pp.105-115, 2002.
DOI : 10.1353/bhm.2002.0022

S. A. Jones, S. Shim, J. He, and X. Zhuang, Fast, three-dimensional super-resolution imaging of live cells, Nature Methods, vol.88, issue.6, pp.499-508, 2011.
DOI : 10.1364/OL.29.002611

N. Jouvenet, S. M. Simon, and P. D. Bieniasz, Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles, Proceedings of the National Academy of Sciences, vol.106, issue.45, pp.19-114, 2009.
DOI : 10.1073/pnas.0907364106

N. Jouvenet, S. S. Simon, and P. P. Bieniasz, Visualizing HIV-1 Assembly, Journal of Molecular Biology, vol.410, issue.4, pp.501-512, 2011.
DOI : 10.1016/j.jmb.2011.04.062

M. F. Juette, T. J. Gould, M. D. Lessard, M. J. Mlodzianoski, B. S. Nagpure et al., Three-dimensional sub???100 nm resolution fluorescence microscopy of thick samples, Nature Methods, vol.89, issue.6, pp.527-536, 2008.
DOI : 10.1038/nmeth.1211

W. K. Kegel, P. V. Schoot, and . Pv, Competing Hydrophobic and Screened-Coulomb Interactions in Hepatitis B Virus Capsid Assembly, Biophysical Journal, vol.86, issue.6, pp.3905-3913, 2004.
DOI : 10.1529/biophysj.104.040055

D. Keller, M. Orpinell, N. Olivier, M. Wachsmuth, R. Mahen et al., Mechanisms of HsSAS-6 assembly promoting centriole formation in human cells, The Journal of Cell Biology, vol.16, issue.5, pp.697-712, 2014.
DOI : 10.1006/jmbi.2000.3692

A. K. Kenworthy, Dynamics of putative raft-associated proteins at the cell surface, The Journal of Cell Biology, vol.112, issue.5, pp.735-746, 2004.
DOI : 10.1016/S1074-7613(00)80606-8

M. A. Kiskowski, J. F. Hancock, and A. K. Kenworthy, On the Use of Ripley's K-Function and Its Derivatives to Analyze Domain Size, Biophysical Journal, vol.97, issue.4, pp.1095-103, 2009.
DOI : 10.1016/j.bpj.2009.05.039

K. Kremer, M. Deserno, B. J. Reynwar, G. Illya, V. A. Harmandaris et al., Aggregation and vesiculation of membrane proteins by curvature-mediated interactions, Nature, vol.447, issue.7143, pp.461-464, 2007.

P. Ku, A. K. Miller, J. Ballew, V. Sandrin, F. R. Adler et al., Identification of Pauses during Formation of HIV-1 Virus Like Particles, Biophysical Journal, vol.105, issue.10, pp.2262-72, 2013.
DOI : 10.1016/j.bpj.2013.09.047

K. B. Laupland and L. Valiquette, Ebola Virus Disease, Canadian Journal of Infectious Diseases and Medical Microbiology, vol.25, issue.3, pp.128-129, 2014.
DOI : 10.1155/2014/527378

A. Legendre, Nouvelles méthodes pour la détermination des orbites des comètes, Didot, p.1805

M. Lelek, F. Di-nunzio, R. Henriques, P. Charneau, N. Arhel et al., Superresolution imaging of HIV in infected cells with FlAsH-PALM, Proceedings of the National Academy of Sciences, vol.109, issue.22, pp.8564-8573, 2012.
DOI : 10.1073/pnas.1013267109

M. Lenz, D. Crow, and J. Joanny, Membrane Buckling Induced by Curved Filaments, Physical Review Letters, vol.103, issue.3, 2009.
DOI : 10.1103/PhysRevLett.103.038101

J. K. Lewis, B. Bothner, T. J. Smith, and G. Siuzdak, Antiviral agent blocks breathing of the common cold virus, Proceedings of the National Academy of Sciences, vol.95, issue.12, pp.6774-6778, 1998.
DOI : 10.1073/pnas.95.12.6774

A. L. Santolaria, Structure, Mechanical Properties, and Self-Assembly of Viral Capsids, 2011.

J. P. Mahalik and M. Muthukumar, Langevin dynamics simulation of polymer-assisted virus-like assembly, The Journal of Chemical Physics, vol.136, issue.13, p.135101, 2012.
DOI : 10.1063/1.3698408

S. Malkusch, W. Muranyi, B. Müller, H. Kräusslich, and M. Heilemann, Single-molecule coordinate-based analysis of the morphology of HIV-1 assembly sites with near-molecular spatial resolution, Histochemistry and Cell Biology, vol.9, issue.1, pp.173-182, 2013.
DOI : 10.1007/s00418-012-1014-4

S. Manley, J. J. Gillette, G. H. Patterson, H. Shroff, H. F. Hess et al., High-density mapping of single-molecule trajectories with photoactivated localization microscopy, Nature Methods, vol.70, issue.2, pp.155-162, 2008.
DOI : 10.1083/jcb.200508165

M. G. Mateu, Mechanical properties of viruses analyzed by atomic force microscopy: A virological perspective, Virus Research, vol.168, issue.1-2, pp.1-22, 2012.
DOI : 10.1016/j.virusres.2012.06.008

M. Mateu, Structure and Physics of Viruses, ser. Subcellular Biochemistry

R. Matthews and C. Likos, Influence of Fluctuating Membranes on Self-Assembly of Patchy Colloids, Physical Review Letters, vol.109, issue.17, pp.1-5, 2012.
DOI : 10.1103/PhysRevLett.109.178302

A. Mcleod, N. Morgan, A. Prakash, and J. Hinrichs, Economic and social impaacts of avian influenza, Tech. Rep, 2005.

A. Mcpherson, Micelle formation and crystallization as paradigms for virus assembly, BioEssays, vol.19, issue.4, pp.447-458, 2005.
DOI : 10.1002/bies.20196

V. Mennella, B. Keszthelyi, K. L. Mcdonald, B. Chhun, F. Kan et al., Subdiffraction-resolution fluorescence microscopy reveals a domain of the centrosome critical for pericentriolar material organization, Nature Cell Biology, vol.32, issue.11, pp.1159-68, 2012.
DOI : 10.1038/ncb2597

P. Metzner, E. Dittmer, T. Jahnke, and C. Schütte, Generator estimation of Markov jump processes, Journal of Computational Physics, vol.227, issue.1, pp.353-375, 2007.
DOI : 10.1016/j.jcp.2007.07.032

C. H. Moon, M. Zhang, N. V. Myung, and E. D. Haberer, S) gas sensors from viral-templated nanocrystalline gold nanowires, Nanotechnology, vol.25, issue.13, pp.1352050957-4484, 2014.
DOI : 10.1088/0957-4484/25/13/135205

A. Y. Morozov, R. F. Bruinsma, and J. Rudnick, Assembly of viruses and the pseudo-law of mass action, The Journal of Chemical Physics, vol.131, issue.15, p.155101, 2009.
DOI : 10.1063/1.3212694

E. Mukamel and M. J. Schnitzer, Unified performance limits for conventional and stochastic localization microscopy, Physical Review Letters, vol.109, issue.16, pp.1-19, 2012.

E. Mukamel, H. Babcock, and X. Zhuang, Statistical Deconvolution for Superresolution Fluorescence Microscopy, Biophysical Journal, vol.102, issue.10, pp.2391-400, 2012.
DOI : 10.1016/j.bpj.2012.03.070

M. Müller and M. Deserno, Cell model approach to membrane mediated protein interactions Progress of Theoretical Physics, 2010.

W. Muranyi, S. Malkusch, B. Müller, M. Heilemann, and H. Kräusslich, Super-Resolution Microscopy Reveals Specific Recruitment of HIV-1 Envelope Proteins to Viral Assembly Sites Dependent on the Envelope C-Terminal Tail, PLoS Pathogens, vol.159, issue.2, p.1003198, 2013.
DOI : 10.1371/journal.ppat.1003198.s008

M. Muthukumar, Polymers under confinement Advances in Chemical Physics, ser Advances in Chemical Physics, 2012.

M. V. Nermut, D. J. Hockley, P. Bron, D. Thomas, W. H. Zhang et al., Further Evidence for Hexagonal Organization of HIV gag Protein in Prebudding Assemblies and Immature Virus-like Particles, Journal of Structural Biology, vol.123, issue.2, pp.143-149, 1998.
DOI : 10.1006/jsbi.1998.4024

A. J. Olson, Y. H. Hu, and E. Keinan, Chemical mimicry of viral capsid self-assembly, Proceedings of the National Academy of Sciences, vol.104, issue.52, pp.20-731, 2007.
DOI : 10.1073/pnas.0709489104

C. C. Paige, Computer solution and perturbation analysis of generalized linear least squares problems, Mathematics of Computation, vol.33, issue.145, pp.171-183, 1979.
DOI : 10.1090/S0025-5718-1979-0514817-3

Y. Pawitan, In all likelihood statistical modelling and inference using likelihood, 2013.

V. S. Reddy, S. K. Natchiar, P. L. Stewart, and G. R. Nemerow, Crystal Structure of Human Adenovirus at 3.5 A Resolution, Science, vol.329, issue.5995, pp.1071-1075, 2010.
DOI : 10.1126/science.1187292

S. Redner, A Guide To First-Passage Processes, 2001.

R. J. Reynolds-tobacco-company,-"-r, Reynolds Tobacco Company Slide Set

M. J. Rust, M. Bates, X. Zhuang, and B. Communications, Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM), Nature Methods, vol.127, issue.10, pp.793-795, 2006.
DOI : 10.1038/nmeth929

C. Sachse, J. Z. Chen, P. Coureux, M. E. Stroupe, M. Fändrich et al., High-resolution Electron Microscopy of Helical Specimens: A Fresh Look at Tobacco Mosaic Virus, Journal of Molecular Biology, vol.371, issue.3, pp.812-847, 2007.
DOI : 10.1016/j.jmb.2007.05.088

P. Sengupta and J. Lippincott-schwartz, Quantitative analysis of photoactivated localization microscopy (PALM) datasets using pair-correlation analysis BioEssays : news and reviews in molecular, cellular and developmental biology, pp.396-405, 2012.

H. Shroff, C. G. Galbraith, J. A. Galbraith, and E. Betzig, Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics, Nature Methods, vol.114, issue.5, pp.417-423, 2008.
DOI : 10.1073/pnas.0708066104

G. Shtengel, J. Galbraith, C. G. Galbraith, J. Lippincott-schwartz, J. M. Gillette et al., Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure, Proceedings of the National Academy of Sciences, vol.106, issue.9, pp.3125-3155, 2009.
DOI : 10.1073/pnas.0813131106

A. Siber, A. L. Bozic, and R. Podgornik, Energies and pressures in viruses: contribution of nonspecific electrostatic interactions, Phys. Chem. Chem. Phys., vol.96, issue.11, pp.3746-3765, 2012.
DOI : 10.1038/ismej.2011.101

J. E. Sillibourne, C. G. Specht, I. Izeddin, I. Hurbain, P. Tran et al., Assessing the localization of centrosomal proteins by PALM/STORM nanoscopy, Cytoskeleton, vol.18, issue.2, pp.619-646, 2011.
DOI : 10.1002/cm.20536

S. Singh and A. Zlotnick, Observed Hysteresis of Virus Capsid Disassembly Is Implicit in Kinetic Models of Assembly, Journal of Biological Chemistry, vol.278, issue.20, pp.18-249, 2003.
DOI : 10.1074/jbc.M211408200

D. E. Smith, S. J. Tans, S. B. Smith, D. L. Grimes, C. Anderson et al., The bacteriophage [phis]29 portal motor can package DNA against a large internal force, Nature, vol.413, issue.6857, pp.748-752, 2001.
DOI : 10.1038/35099581

H. Smith, Applied regression analysis, 3rd ed., ser. Wiley series in probability and statistics, 1998.

T. Splettstoesser, TMV structure full, " licensed under CC BY-SA 3.0 via Commons

W. M. Stanley, ISOLATION OF A CRYSTALLINE PROTEIN POSSESSING THE PROPERTIES OF TOBACCO-MOSAIC VIRUS, Science, vol.81, issue.2113, pp.644-645, 1935.
DOI : 10.1126/science.81.2113.644

N. F. Steinmetz, A. L. Ablack, J. L. Hickey, J. Ablack, B. Manocha et al., Intravital Imaging of Human Prostate Cancer Using Viral Nanoparticles Targeted to Gastrin-Releasing Peptide Receptors, Small, vol.75, issue.12, pp.1602-1602, 2011.
DOI : 10.1002/smll.201000435

A. Szymborska, A. De-marco, N. Daigle, V. C. Cordes, J. A. Briggs et al., Nuclear Pore Scaffold Structure Analyzed by Super-Resolution Microscopy and Particle Averaging, Science, vol.341, issue.6146, pp.655-663, 2013.
DOI : 10.1126/science.1240672

C. Teh and R. Chin, On image analysis by the methods of moments, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.10, issue.4, pp.496-513, 1988.
DOI : 10.1109/34.3913

R. E. Thompson, D. R. Larson, and W. W. Webb, Precise Nanometer Localization Analysis for Individual Fluorescent Probes, Biophysical Journal, vol.82, issue.5, pp.2775-2783, 2002.
DOI : 10.1016/S0006-3495(02)75618-X

D. C. Torney and H. M. Mcconnell, Diffusion-Limited Reaction Rate Theory for Two-Dimensional Systems, Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.387, issue.1792, pp.147-170, 1983.
DOI : 10.1098/rspa.1983.0055

B. G. Turner and M. F. Summers, Structural biology of HIV, Journal of Molecular Biology, vol.285, issue.1, pp.1-32, 1999.
DOI : 10.1006/jmbi.1998.2354

S. B. Van-engelenburg, G. Shtengel, P. Sengupta, K. Waki, M. Jarnik et al., Distribution of ESCRT Machinery at HIV Assembly Sites Reveals Virus Scaffolding of ESCRT Subunits, Science, vol.343, issue.6171, pp.653-659, 2014.
DOI : 10.1126/science.1247786

N. G. Van-kampen, Stochastic processes in physics and chemistry, ser. North- Holland personal library, Mass.) Heidelberg [etc, 2007.

A. Wald, Note on the Consistency of the Maximum Likelihood Estimate, The Annals of Mathematical Statistics, vol.20, issue.4, pp.595-601, 1949.
DOI : 10.1214/aoms/1177729952

T. Wilk, I. Gross, B. Gowen, and T. Rutten, Organization of Immature Human Immunodeficiency Virus Type 1, Journal of Virology, vol.75, issue.2, pp.759-771, 2001.
DOI : 10.1128/JVI.75.2.759-771.2001

E. R. Wright, J. B. Schooler, H. J. Ding, C. Kieffer, C. Fillmore et al., Electron cryotomography of immature HIV-1 virions reveals the structure of the CA and SP1 Gag shells, The EMBO Journal, vol.78, issue.8, pp.2218-2244, 2007.
DOI : 10.1038/sj.emboj.7601664

M. Zaitlin, The Discovery of the Causal Agent of the Tobacco Mosaic Disease, Discoveries in Plant Biology, pp.105-110, 1998.
DOI : 10.1142/9789812817563_0007

R. Zandi, P. Van-der-schoot, D. Reguera, W. Kegel, and H. Reiss, Classical Nucleation Theory of Virus Capsids, Biophysical Journal, vol.90, issue.6, pp.1939-1987, 2006.
DOI : 10.1529/biophysj.105.072975

T. Zhang and R. Schwartz, Simulation Study of the Contribution of Oligomer/Oligomer Binding to Capsid Assembly Kinetics, Biophysical Journal, vol.90, issue.1, pp.57-64, 2006.
DOI : 10.1529/biophysj.105.072207

P. Zhu, E. Chertova, J. Bess, J. D. Lifson, L. O. Arthur et al., Electron tomography analysis of envelope glycoprotein trimers on HIV and simian immunodeficiency virus virions, Proceedings of the National Academy of Sciences, vol.100, issue.26, pp.15-812, 2003.
DOI : 10.1073/pnas.2634931100

A. Zlotnick, To Build a Virus Capsid, Journal of Molecular Biology, vol.241, issue.1, pp.59-67, 1994.
DOI : 10.1006/jmbi.1994.1473

R. Zlotnick, J. M. Aldrich, P. Johnson, M. J. Ceres, and . Young, Mechanism of Capsid Assembly for an Icosahedral Plant Virus, Virology, vol.277, issue.2, pp.450-456, 2000.
DOI : 10.1006/viro.2000.0619

A. Zlotnick and S. J. Stray, How does your virus grow? Understanding and interfering with virus assembly, Trends in Biotechnology, vol.21, issue.12, pp.536-578, 2003.
DOI : 10.1016/j.tibtech.2003.09.012