E. D. Demaine, A. Brodnik, S. Carlsson, J. I. Munro, and R. Sedgewick, Resizable arrays in optimal time and space, 6th Workshop on Algorhtms and Data Structures (WADS), 1663 of LNCS, 1999.

B. Agullo and D. Coulaud, Task-based FMM for heterogeneous architectures, Concurrency and Computation: Practice and Experience, vol.7490, issue.9, 2014.
DOI : 10.1002/cpe.3723

URL : https://hal.archives-ouvertes.fr/hal-00974674

J. Ahrens, B. Geveci, and C. Law, paraview : An end-user tool for large-data visualization. The Visualization Handbook, pp.36-717, 2005.

P. Mike, . Allen, J. Dominic, and . Tildesley, Computer simulation of liquids, 1989.

V. Alshits and V. Indenbom, Mechanisms of dislocation drag, Dislocations in Solids, 1986.

R. Amodeo-et-nasr-mostafa and . Ghoniem, Dynamical computer simulation of the evolution of a one-dimensional dislocation pileup, International Journal of Engineering Science, vol.26, issue.7, pp.653-662, 1988.
DOI : 10.1016/0020-7225(88)90085-7

A. Arsenlis, . Rhee, R. Hommes, . Cook, and . Marian, A dislocation dynamics study of the transition from homogeneous to heterogeneous deformation in irradiated body-centered cubic iron, Acta Materialia, vol.60, issue.9, pp.3748-3757, 2012.
DOI : 10.1016/j.actamat.2012.03.041

A. Arsenlis, W. Cai, M. Tang, M. Rhee, T. Oppelstrup et al., Enabling strain hardening simulations with dislocation dynamics, Modelling and Simulation in Materials Science and Engineering, vol.15, issue.6, p.553, 2007.
DOI : 10.1088/0965-0393/15/6/001

C. Augonnet, S. Thibault, R. Namyst, and P. Wacrenier, Starpu : a unified platform for task scheduling on heterogeneous multicore architectures. Concurrency and Computation : Practice and Experience, pp.187-198, 2011.
URL : https://hal.archives-ouvertes.fr/inria-00384363

D. Baraff, Fast contact force computation for nonpenetrating rigid bodies, Proceedings of the 21st annual conference on Computer graphics and interactive techniques , SIGGRAPH '94, pp.23-34, 1994.
DOI : 10.1145/192161.192168

J. Barnes and P. Hut, A hierarchical O(N log N) force-calculation algorithm, Nature, vol.6, issue.6096, pp.446-449, 1986.
DOI : 10.1038/324446a0

B. Devincre, Études de la plasticité des solides cristallins par dynamique des dislocations à l'échelle mésoscopique, 2005.

A. Braginsky and E. Petrank, Locality-Conscious Lock-Free Linked Lists, Distributed Computing and Networking, pp.107-118, 2011.
DOI : 10.1007/978-3-642-17679-1_10

L. M. Brown, The self-stress of dislocations and the shape of extended nodes, Philosophical Magazine, vol.10, issue.105, pp.441-466, 1964.
DOI : 10.1103/PhysRev.116.1113

V. Bulatov and W. Cai, Computer simulations of dislocations, 2006.

V. Bulatov, W. Cai, J. Fier, M. Hiratani, G. Hommes et al., Scalable Line Dynamics in ParaDiS, Proceedings of the ACM/IEEE SC2004 Conference, p.19, 2004.
DOI : 10.1109/SC.2004.53

V. Vasily, W. Bulatov, and . Cai, Nodal effects in dislocation mobility. Physical review letters, p.115501, 2002.

V. Vasily, M. Bulatov, W. Rhee, and . Cai, Periodic boundary conditions for dislocation dynamics simulations in three dimensions, MRS Proceedings, pp.1-3, 2000.

W. Cai, A. Arsenlis, R. Christopher, . Weinberger, V. Vasily et al., A non-singular continuum theory of dislocations, Journal of the Mechanics and Physics of Solids, vol.54, issue.3, pp.561-587, 2006.
DOI : 10.1016/j.jmps.2005.09.005

G. Canova, Y. Bréchet, B. Lb-kubin, and . Devincre, Vassilis Pontikis et M Condat : 3d simulation of dislocation motion on a lattice : application to the yield surface of single crystals, Solid State Phenomena, vol.35, pp.101-106, 1993.

B. Chapman, G. Jost, and . Ruud-van-der-pas, Using OpenMP : Portable Shared Memory Parallel Programming (Scientific and Engineering Computation)

J. Senger, C. Motz, D. Weygand, and P. Gumbsch, Initial dislocation structures in 3-d discrete dislocation dynamics and their influence on microscale plasticity, Acta Materialia, vol.57, pp.1744-1754, 2009.

O. Coulaud, P. Fortin, and J. Roman, High performance BLAS formulation of the adaptive Fast Multipole Method, Mathematical and Computer Modelling, vol.51, issue.3-4, pp.177-188, 2010.
DOI : 10.1016/j.mcm.2009.08.039

URL : https://hal.archives-ouvertes.fr/hal-01146520

R. Lesar, C. Zhou, and S. Biner, Discrete dislocation dynamics simulations of plasticity at small scales, Acta Materialia, vol.58, issue.3, pp.1565-1577, 2009.

R. Schöne, M. S. Müller-daniel-molka, and D. Hackenberg, Memory performance and cache coherency effects on an intel nehalem multiprocessor system, Parallel Architectures and Compilation Techniques (PACT), pp.261-270, 2009.

R. De and W. , The continuum theory of stationary dislocations. Solid State Physics, pp.249-292, 1960.

D. Erik and . Demaine, Cache-oblivious algorithms and data structures, Lecture Notes from the EEF Summer School on Massive Data Sets, vol.8, issue.4, pp.1-249, 2002.

. Devincre, Dislocation dynamics simulations of slip systems interactions and forest strengthening in ice single crystal, Philosophical Magazine, vol.48, issue.1-3, pp.235-246, 2013.
DOI : 10.1080/14786435.2012.699689

B. Devincre and M. Condat, Model validation of a 3d simulation of dislocation dynamics : discretization and line tension effects. Acta metallurgica et materialia, pp.2629-2637, 1992.

B. Devincre and L. Kubin, Simulations of forest interactions and strain hardening in FCC crystals, Modelling and Simulation in Materials Science and Engineering, vol.2, issue.3A, p.559, 1994.
DOI : 10.1088/0965-0393/2/3A/010

B. Devincre, . Madec, . Monnet, R. Queyreau, L. Gatti et al., Modeling crystal plasticity with dislocation dynamics simulations : The 'micromegas' code. Mechanics of Nano-objects, pp.81-100, 2011.

L. Dézerald, L. Ventelon, F. Willaime, E. Clouet, and D. Rodney, Large scale ab initio calculations of extended defects in materials : screw dislocations in bcc metals, SNA+ MC 2013-Joint International Conference on Supercomputing in Nuclear Applications+ Monte Carlo, p.1306, 2014.

D. Garcia-rodriguez, Optimisation d'un code de dynamique de dislocations pour l'étude de la plasticité des aciers ferritiques, 2011.

J. Jack, J. D. Dongarra, S. Croz, . Hammarling, S. Iain et al., A set of level 3 basic linear algebra subprograms, ACM Transactions on Mathematical Software (TOMS), vol.16, issue.1, pp.1-17, 1990.

J. Drouet, L. Dupuy, F. Onimus, F. Mompiou, S. Perusin et al., Dislocation dynamics simulations of interactions between gliding dislocations and radiation induced prismatic loops in zirconium, Journal of Nuclear Materials, vol.449, issue.1-3, pp.252-262, 2014.
DOI : 10.1016/j.jnucmat.2013.11.049

L. Dupuy, A study of dislocation junctions in FCC metals by an orientation dependent line tension model, Acta Materialia, vol.50, issue.19, pp.4873-4885, 2002.
DOI : 10.1016/S1359-6454(02)00356-7

A. Rex and . Dwyer, A faster divide-and-conquer algorithm for constructing delaunay triangulations, Algorithmica, vol.2, issue.1-4, pp.137-151, 1987.

A. Frigo, F.f.t.w. : an adaptive software architecture for the fft, Proceedings of the Acoustics, Speech, and Signal Processing, pp.1381-1384, 1998.

A. Michael and . Et-al, Optimal cache-oblivious mesh layouts, Theory of Computing Systems, pp.269-296, 2009.

K. Farrell, T. S. Byun, and N. Hashimoto, Deformation mode maps for tensile deformation of neutron-irradiated structural alloys, Journal of Nuclear Materials, vol.335, issue.3, pp.471-486, 2004.
DOI : 10.1016/j.jnucmat.2004.08.006

F. Ferroni, E. Tarleton, and S. Fitzgerald, GPU accelerated dislocation dynamics, Journal of Computational Physics, vol.272, pp.619-628, 2014.
DOI : 10.1016/j.jcp.2014.04.052

M. Fivel, T. Gosling, and G. Canova, Implementing image stresses in a 3D dislocation simulation, Modelling and Simulation in Materials Science and Engineering, vol.4, issue.6, p.581, 1996.
DOI : 10.1088/0965-0393/4/6/003

A. Foreman, Junction reaction hardening by dislocation loops, Philosophical Magazine, vol.14, issue.146, pp.353-364, 1968.
DOI : 10.1080/14786436608219009

A. Foreman and . Makin, Dislocation movement through random arrays of obstacles, Philosophical Magazine, vol.14, issue.131, pp.911-924, 1966.
DOI : 10.1016/0001-6160(65)90007-6

P. Fortin, High performance parallel hierarchical algorithmic for N-body problems . Theses, Université Sciences et Technologies -Bordeaux I, novembre, 2006.
URL : https://hal.archives-ouvertes.fr/tel-00135843

F. Frank, . Wt-read, and . Jr, Multiplication Processes for Slow Moving Dislocations, Physical Review, vol.79, issue.4, p.722, 1950.
DOI : 10.1103/PhysRev.79.722

M. L. Fredman and M. Saks, The cell probe complexity of dynamic data structures, Proceedings of the twenty-first annual ACM symposium on Theory of computing , STOC '89, pp.345-354, 1989.
DOI : 10.1145/73007.73040

L. Frias, J. Petit, and S. Roura, Lists revisited, Experimental Algorithms, pp.121-133, 2006.
DOI : 10.1145/1498698.1564505

M. Frigo, E. Charles, H. Leiserson, S. Prokop, and . Ramachandran, Cache-oblivious algorithms, Foundations of Computer Science 40th Annual Symposium on, pp.285-297, 1999.

M. Frigo, E. Charles, H. Leiserson, S. Prokop, and . Ramachandran, Cache-oblivious algorithms, Foundations of Computer Science 40th Annual Symposium on, pp.285-297, 1999.

D. Gardner, C. Woodward, . Reynolds, . Hommes, . Aubry et al., Implicit integration methods for dislocation dynamics, Modelling and Simulation in Materials Science and Engineering, vol.23, issue.2, p.25006, 2015.
DOI : 10.1088/0965-0393/23/2/025006

M. Nasr, R. Ghoniem, and . Amodeo, Computer Simulaltion of Dislocation Pattern Formation, Trans Tech Publ, vol.3, 1991.

D. Gomez-garcia, L. Devincre, and . Kubin, Dislocation patterns and the similitude principle : 2.5 d mesoscale simulations. Physical review letters, pp.96-125503, 2006.

L. Greengard and V. Rokhlin, A fast algorithm for particle simulations, Journal of Computational Physics, vol.73, issue.2, pp.325-348, 1987.
DOI : 10.1016/0021-9991(87)90140-9

W. Gropp, E. Lusk, N. Doss, and A. Skjellum, A high-performance, portable implementation of the MPI message passing interface standard, Parallel Computing, vol.22, issue.6, pp.789-828, 1996.
DOI : 10.1016/0167-8191(96)00024-5

M. Herlihy, J. Eliot, and B. Moss, Transactional memory : Architectural support for lock-free data structures, 1993.

P. B. Hirsch, R. W. Horne, and M. J. , LXVIII. Direct observations of the arrangement and motion of dislocations in aluminium, Philosophical Magazine, vol.43, issue.7, pp.677-684, 1956.
DOI : 10.1088/0370-1301/64/9/301

P. John, J. Hirth, and . Lothe, Theory of dislocations, 1982.

D. Hull, J. David, and . Bacon, Introduction to dislocations, 2001.

J. Martin, J. Hÿtch, J. Putaux, and . Pénisson, Measurement of the displacement field of dislocations to 0.03 å by electron microscopy, Nature, issue.6937, pp.423270-273, 2003.

K. Iglberger and U. Rüde, Massively parallel rigid body dynamics simulations, Computer Science - Research and Development, vol.74, issue.4, pp.159-167, 2009.
DOI : 10.1007/s00450-009-0066-8

V. Laxmikant, S. Kale, and . Krishnan, CHARM++ : a portable concurrent object oriented system based on C++, 1993.

M. Kowarschik and C. Weiß, An Overview of Cache Optimization Techniques and Cache-Aware Numerical Algorithms, Algorithms for Memory Hierarchies, pp.213-232, 2003.
DOI : 10.1007/3-540-36574-5_10

P. Ladislas, . Kubin, . Canova, . Condat, V. Benoit-devincre et al., Dislocation microstructures and plastic flow : a 3d simulation, Solid State Phenomena, vol.23, pp.455-472, 1992.

D. Monica, . Lam, E. Edward, . Rothberg, E. Michael et al., The cache performance and optimizations of blocked algorithms, ACM SIGOPS Operating Systems Review, vol.25, pp.63-74, 1991.

C. Lemarchand, L. Devincre, and . Kubin, Homogenization method for a discrete-continuum simulation of dislocation dynamics, Journal of the Mechanics and Physics of Solids, vol.49, issue.9, pp.1969-1982, 2001.
DOI : 10.1016/S0022-5096(01)00026-6

T. Leng, R. Ali, J. Hsieh, V. Mashayekhi, and R. Rooholamini, An empirical study of hyper-threading in high performance computing clusters, Linux HPC Revolution, 2002.

F. Liu, T. Harada, Y. Lee, J. Young, and . Kim, Real-time collision culling of a million bodies on graphics processing units, ACM SIGGRAPH Asia 2010 papers on, SIGGRAPH ASIA '10, p.154, 2010.
DOI : 10.1145/1882262.1866180

K. Madec, Devincre : From dislocation junctions to forest hardening. Physical review letters, p.255508, 2002.

E. Martinez, J. Marian, M. Arsenlis, J. M. Victoria, and . Perlado, Atomistically informed dislocation dynamics in fcc crystals, Journal of the Mechanics and Physics of Solids, vol.56, issue.3, pp.869-895, 2008.
DOI : 10.1016/j.jmps.2007.06.014

E. Ronald, D. Miller, and . Rodney, On the nonlocal nature of dislocation nucleation during nanoindentation, Journal of the Mechanics and Physics of Solids, vol.56, issue.4, pp.1203-1223, 2008.

T. Mura, Micromechanics of defects in solids, 1987.

F. Nabarro, Dislocations in a simple cubic lattice, Proceedings of the Physical Society, p.256, 1947.
DOI : 10.1088/0959-5309/59/2/309

L. Nicola, . Van-der-giessen, and . Needleman, 2D dislocation dynamics in thin metal layers, Materials Science and Engineering: A, vol.309, issue.310, pp.2-274, 2001.
DOI : 10.1016/S0921-5093(00)01690-7

E. Orowan, Zur kristallplastizität. i. Zeitschrift für Physik, pp.605-613, 1934.

N. Yu, . Osetsky, J. David, and . Bacon, An atomic-level model for studying the dynamics of edge dislocations in metals. Modelling and simulation in materials science and engineering, p.427, 2003.

M. Peach and . Koehler, The Forces Exerted on Dislocations and the Stress Fields Produced by Them, Physical Review, vol.80, issue.3, p.436, 1950.
DOI : 10.1103/PhysRev.80.436

O. Pearce, T. Gamblin, R. Bronis, T. De-supinski, . Arsenlis et al., Load balancing n-body simulations with highly non-uniform density, Proceedings of the 28th ACM international conference on Supercomputing, ICS '14, pp.113-122, 2014.
DOI : 10.1145/2597652.2597659

R. Peierls, The size of a dislocation, Proceedings of the Physical Society, vol.52, issue.1, pp.34-37, 1940.
DOI : 10.1088/0959-5309/52/1/305

M. Polanyi, Über eine art gitterstörung, die einen kristall plastisch machen könnte, Zeitschrift für Physik, pp.660-664, 1934.

V. Raman and S. S. Rao, Succint dynamic dictionaries and trees, Proc. of Automata, pp.2719-357, 2003.
DOI : 10.1007/3-540-45061-0_30

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.537.3741

S. Raoul, Intergranular brittle fracture of a low alloy steel induced by grain boundary segregation of impurities : influence of the microstructure. Rapport technique, CEA/Saclay, p.91, 1999.

M. Rhee, . Zbib, H. Hirth, T. Huang, and R. De-la, Models for long-/short-range interactions and cross slip in 3D dislocation simulation of BCC single crystals, Modelling and Simulation in Materials Science and Engineering, vol.6, issue.4, p.467, 1998.
DOI : 10.1088/0965-0393/6/4/012

R. Madec, Parallélisation du code de dynamique des dislocations micromegas, 2011.

F. Roters, . Eisenlohr, . Hantcherli, T. Tjahjanto, D. Bieler et al., Overview of constitutive laws, kinematics, homogenization and multiscale methods in crystal plasticity finite-element modeling: Theory, experiments, applications, Acta Materialia, vol.58, issue.4, pp.1152-1211, 2010.
DOI : 10.1016/j.actamat.2009.10.058

R. Rugina and M. Rinard, Automatic parallelization of divide and conquer algorithms, ACM SIGPLAN Notices, pp.72-83, 1999.

H. Sagan, Space-filling curves, 1994.
DOI : 10.1007/978-1-4612-0871-6

K. Schwarz, Simulation of dislocations on the mesoscopic scale. I. Methods and examples, 94] A Serra et DJ Bacon : Atomic-level computer simulation of the interaction between 1, pp.108-119, 1999.
DOI : 10.1063/1.369429

V. Shenoy, R. Kukta, and R. Phillips, Mesoscopic Analysis of Structure and Strength of Dislocation Junctions in fcc Metals, Physical Review Letters, vol.84, issue.7, p.1491, 2000.
DOI : 10.1103/PhysRevLett.84.1491

C. Shin, C. Marc, M. Fivel, S. Verdier, and . Kwon, Numerical methods to improve the computing efficiency of discrete dislocation dynamics simulations, Journal of Computational Physics, vol.215, issue.2, pp.417-429, 2006.
DOI : 10.1016/j.jcp.2005.10.025

URL : https://hal.archives-ouvertes.fr/hal-00207472

B. Ryan, W. Sills, and . Cai, Efficient time integration in dislocation dynamics. Modelling and Simulation in, Materials Science and Engineering, vol.22, issue.2, p.25003, 2014.

M. Tchiboukdjian, Algorithmes parallèles efficaces en cache Applications à la visualisation scientifique. Spécialité informatique, 2010.

D. Terentyev, N. Anento, and A. Serra, Interaction of ???100??? loops with Carbon atoms and ???100??? dislocations in BCC Fe: An atomistic study, Journal of Nuclear Materials, vol.420, issue.1-3, pp.9-15, 2012.
DOI : 10.1016/j.jnucmat.2011.08.037

D. Terentyev, D. Grammatikopoulos, . Bacon, N. Yu, and . Osetsky, Simulation of the interaction between an edge dislocation and a ???100??? interstitial dislocation loop in ??-iron, Acta Materialia, vol.56, issue.18, pp.565034-5046, 2008.
DOI : 10.1016/j.actamat.2008.06.032

E. Van-der-giessen and A. Needleman, Discrete Dislocation Plasticity, Materials Science and Engineering, vol.3, issue.5, p.689, 1995.
DOI : 10.1007/978-1-4020-3286-8_56

URL : https://hal.archives-ouvertes.fr/hal-00513992

A. Vattré, . Devincre, . Feyel, . Gatti, O. Groh et al., Modelling crystal plasticity by 3D dislocation dynamics and the finite element method: The Discrete-Continuous Model revisited, Journal of the Mechanics and Physics of Solids, vol.63, pp.491-505, 2014.
DOI : 10.1016/j.jmps.2013.07.003

A. Vattré, . Devincre, . Feyel, . Gatti, O. Groh et al., Modelling crystal plasticity by 3D dislocation dynamics and the finite element method: The Discrete-Continuous Model revisited, Journal of the Mechanics and Physics of Solids, vol.63, pp.491-505, 2014.
DOI : 10.1016/j.jmps.2013.07.003

T. Veldhuizen, Expression templates, C++ Report, vol.7, issue.5, pp.26-31, 1995.

M. Verdier, M. Fivel, and I. Groma, Mesoscopic scale simulation of dislocation dynamics in fcc metals: Principles and applications, Modelling and Simulation in Materials Science and Engineering, vol.6, issue.6, p.755, 1998.
DOI : 10.1088/0965-0393/6/6/007

R. Stephen and . Walli, The posix family of standards, StandardView, vol.3, issue.1, pp.11-17, 1995.

Z. Wang, N. Ghoniem, S. Swaminarayan, and R. Lesar, A parallel algorithm for 3D dislocation dynamics, Journal of Computational Physics, vol.219, issue.2, pp.608-621, 2006.
DOI : 10.1016/j.jcp.2006.04.005

J. Deng, W. Cai, and K. Kang, A short course on ddlab and paradis. Rapport technique, 2005.

D. Weygand, C. Senger, . Motz, . Augustin, P. Heuveline et al., High Performance Computing and Discrete Dislocation Dynamics: Plasticity of Micrometer Sized Specimens, High Performance Computing in Science and Engi- neering'08, pp.507-523, 2009.
DOI : 10.1007/978-3-540-88303-6_36

V. Yastrebov, G. Cailletaud, and F. Feyel, Couplage de codes éléments finis et dynamique discrète de dislocations, CSMA 2013-11ème colloque national en calcul des structures, pp.2-2013