.. Impact-des-Égalités-sur-les-algorithmes, 61 3.3.1 Méthodologie pour adapter les algorithmes aux égalités

.. Le-module-d-'agrégation-de-classements, 146 5.2.5 Présentation de l'outil, p.158

A. Ailon, Aggregation of Partial Rankings, p-Ratings and Top-m Lists, Algorithmica, vol.3, issue.3, pp.284-300, 2010.
DOI : 10.1007/s00453-008-9211-1

A. Ali and M. Meil?, Experiments with Kemeny ranking: What works when?, Mathematical Social Sciences, vol.64, issue.1, pp.28-40, 2012.
DOI : 10.1016/j.mathsocsci.2011.08.008

R. Alan and . Aronson, Effective mapping of biomedical text to the UMLS Metathesaurus : the MetaMap program, Proceedings of the AMIA Symposium. American Medical Informatics Association, p.17, 2001.

[. Biedl, J. Franz, X. Brandenburg, and . Deng, On the complexity of crossings in permutations, Discrete Mathematics, vol.309, issue.7, pp.1813-1823, 2009.
DOI : 10.1016/j.disc.2007.12.088

[. Betzler, R. Bredereck, and R. Niedermeier, Theoretical and empirical evaluation of data reduction for exact Kemeny Rank Aggregation, Autonomous Agents and Multi-Agent Systems, vol.34, issue.3, pp.1-28, 2013.
DOI : 10.1007/s10458-013-9236-y

[. Betzler, J. Guo, C. Komusiewicz, and R. Niedermeier, Average parameterization and partial kernelization for computing medians, Journal of Computer and System Sciences, vol.77, issue.4, pp.774-789, 2011.
DOI : 10.1016/j.jcss.2010.07.005

[. Bergmann and Y. Gil, Similarity assessment and efficient retrieval of semantic workflows, Information Systems, vol.40, pp.115-127, 2014.
DOI : 10.1016/j.is.2012.07.005

A. Balmin, V. Hristidis, and Y. Papakonstantinou, ObjectRank, Proceedings of the Thirtieth international conference on Very large data bases, pp.564-575, 2004.
DOI : 10.1016/B978-012088469-8.50051-6

P. Jacob, S. Baskin, and . Krishnamurthi, Preference aggregation in group recommender systems for committee decision-making

[. Brancotte and R. Milosz, Rank aggregation with ties is at least as difficult as rank aggregation without ties. Internal report. Univ. Paris-Sud -France The unified medical language system (UMLS) : integrating biomedical terminology, Nucleic acids research 32, pp.267-270, 2004.

]. J. Bor81 and . De-borda, Mémoire sur les élections au scrutin, Histoire de l'academie royal des sciences, pp.657-664, 1781.

A. Bra+11-]-bryan-brancotte, I. Biton, F. Bernard-pierrot, F. Radvanyi, S. Reyal et al., Gene List significance at-a-glance with GeneValorization, Bioinformatics, vol.278, pp.1187-1189, 2011.

B. Bra+14-]-bryan-brancotte, A. Rance, S. Denise, and . Cohen-boulakia, ConQuR-Bio : Consensus Ranking with Query Reformulation for Biological Data, Data Integration in the Life Sciences. T. 8574. LNCS. 2014, pp.128-142

B. Bra+15-]-bryan-brancotte, G. Yang, S. Blin, A. Cohen-boulakia, S. Denise et al., Rank aggregation with ties : Experiments and Analysis, Proceedings of the VLDB Endowment, p.11, 2015.

[. Brancotte, Conception et implémentation de fonctions de tri pour les données biologiques issues du Web, 2009.

[. Brancotte, Vers un cadre unifiant des approches de tris pour les données biologiques " . co-encadré par Sarah Cohen-Boulakia et Alain Denise. Mém.de mast, 2012.

P. Andrew and . Bradley, The use of the area under the ROC curve in the evaluation of machine learning algorithms, Pattern Recognition, vol.30, pp.1145-1159, 1997.

A. Birkland and G. Yona, BIOZON : a system for unification , management and analysis of heterogeneous biological data, BMC Bioinformatics, vol.7, issue.1, p.70, 2006.
DOI : 10.1186/1471-2105-7-70

[. Cohen-boulakia, O. Biton, S. Davidson, and C. Froidevaux, BioGuideSRS: querying multiple sources with a user-centric perspective, Bioinformatics, vol.23, issue.10, pp.1301-1303, 2007.
DOI : 10.1093/bioinformatics/btm088

[. Cohen-boulakia, A. Denise, and S. Hamel, Using Medians to Generate Consensus Rankings for Biological Data, Scientific and Statistical Database Management. LNCS 6809, pp.73-90, 2011.
DOI : 10.1007/978-3-540-77918-6_21
URL : https://hal.archives-ouvertes.fr/inria-00584690

[. Cohen-boulakia and U. Leser, Next generation data integration for Life Sciences, 2011 IEEE 27th International Conference on Data Engineering, pp.1366-1369, 2011.
DOI : 10.1109/ICDE.2011.5767957
URL : https://hal.archives-ouvertes.fr/inria-00542359

A. Vincent-conitzer, J. Davenport, and . Kalagnanam, Improved bounds for computing Kemeny rankings, Proceedings of the 21st national conference on Artificial intelligence

M. L. Boston, A. Fleischer, and . Rudra, isbn : 978- 1-57735-281-5. url : http : / / dl . acm . org / citation . cfm ? Ordering by weighted number of wins gives a good ranking for weighted tournaments, Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm, pp.620-626, 2006.

[. Cheng, M. Rademaker, B. D. Baets, and E. Hüllermeier, Predicting Partial Orders: Ranking with Abstention, Machine Learning and Knowledge Discovery in Databases, pp.215-230, 2010.
DOI : 10.1007/978-3-642-15880-3_20

[. Chanas and P. Kobyla?ski, A new heuristic algorithm solving the linear ordering problem, Computational Optimization and Applications, vol.12, issue.no. 6, pp.191-205, 1996.
DOI : 10.1007/BF00249646

H. Arthur and . Copeland, A reasonable social welfare function, University of Michigan Seminar on Applications of Mathematics to the social sciences, 1951.

[. Critchlow, Metric methods for analyzing partially ranked data, 1984.
DOI : 10.1007/978-1-4612-1106-8

W. William, . Cohen, E. Robert, Y. Schapire, and . Singer, Learning to order things, J Artif Intell Res, vol.10, pp.243-270, 1999.

T. Coleman and A. Wirth, Ranking tournaments, Journal of Experimental Algorithmics, vol.14, pp.14-20, 2009.
DOI : 10.1145/1498698.1537601

A. Denise, Structures aléatoires modèles et analyse des génomes, 2002.

[. Detwiler, W. Gatterbauer, B. Louie, D. Suciu, and P. Tarczy-hornoch, Integrating and Ranking Uncertain Scientific Data A Knowledge- Based Approach to Medical Records Retrieval, pp.1235-1238, 2009.

[. Diaconis, L. Ronald, and . Graham, Spearman's footrule as a measure of disarray, Journal of the Royal Statistical Society. Series B (Methodological), pp.262-268, 1977.

[. Ding, X. He, P. Husbands, H. Zha, D. Horst et al., PageRank, HITS and a unified framework for link analysis, Proceedings of the 25th annual international ACM SI- GIR conference on Research and development in information retrieval, pp.353-354, 2002.

A. Davenport and J. Kalagnanam, A computational study of the Kemeny rule for preference aggregation, pp.697-702, 2004.

[. Dwork, R. Kumar, M. Naor, and D. Sivakumar, Rank aggregation methods for the Web, Proceedings of the tenth international conference on World Wide Web , WWW '01, pp.613-622, 2001.
DOI : 10.1145/371920.372165

R. Fagin, R. Kumar, M. Mahdian, D. Sivakumar, and E. Vee, Comparing and aggregating rankings with ties, Proceedings of the twenty-third ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems , PODS '04, pp.47-58, 2004.
DOI : 10.1145/1055558.1055568

[. Fagin, R. Kumar, M. Mahdian, D. Sivakumar, and E. Vee, Comparing Partial Rankings, SIAM Journal on Discrete Mathematics, vol.20, issue.3, pp.628-648, 2006.
DOI : 10.1137/05063088X

]. R. Fks03a, R. Fagin, D. Kumar, and . Sivakumar, Efficient similarity search and classification via rank aggregation, Proceedings of the 2003 ACM SIGMOD international conference on Management of data, pp.301-312, 2003.

[. Fagin, R. Kumar, and D. Sivakumar, Efficient similarity search and classification via rank aggregation, Proceedings of the 2003 ACM SIGMOD international conference on on Management of data , SIGMOD '03, pp.301-312, 2003.
DOI : 10.1145/872757.872795

[. Flajolet, P. Zimmerman, and B. Van-cutsem, A calculus for the random generation of labelled combinatorial structures, Theoretical Computer Science, vol.132, issue.1-2, pp.1-35, 1994.
DOI : 10.1016/0304-3975(94)90226-7
URL : https://hal.archives-ouvertes.fr/hal-00917729

A. Carole, J. Goble, S. Bhagat, D. Aleksejevs, D. Cruickshank et al., myExperiment : a repository and social network for the sharing of bioinformatics workflows, Nucleic acids research 38, pp.677-682, 2010.

[. Gendreau and J. Potvin, Metaheuristics in Combinatorial Optimization, Annals of Operations Research, vol.1, issue.1, pp.189-213, 2005.
DOI : 10.1007/s10479-005-3971-7

L. Ronald and . Graham, Concrete mathematics :[a foundation for computer science, Pearson Education India, 1994.

Y. Michael, . Galperin, J. Daniel, . Rigden, M. Xosé et al., The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection, Nucleic acids research 43, pp.1-1, 2015.

[. Hivert and N. M. Thiéry, MuPAD-Combinat, an opensource package for research in algebraic combinatorics, Art. B51z, p.pp. (electronic), 2004.
URL : https://hal.archives-ouvertes.fr/hal-00622769

M. Jacob, B. Kimelfeld, and J. Stoyanovich, A system for management and analysis of preference data, Proc. of the VLDB Endowment, p.12, 2014.
DOI : 10.14778/2732977.2732998

G. John and . Kemeny, Mathematics without numbers, pp.577-591, 1959.

G. Maurice and . Kendall, A new measure of rank correlation, Biometrika, pp.81-93, 1938.

M. Jon and . Kleinberg, Authoritative sources in a hyperlinked environment, Journal of the ACM (JACM), vol.465, pp.604-632, 1999.

[. Likert, A technique for the measurement of attitudes, In : Archives of psychology, 1932.

B. Carolyn and E. Lipscomb, Medical subject headings (MeSH), In : Bulletin of the Medical Library Association, vol.883, p.265, 2000.

[. Maglott, J. Ostell, D. Kim, T. Pruitt, and . Tatusova, Entrez Gene : gene-centered information at NCBI " . In : Nucleic acids research 39, pp.1-52, 2011.

[. Meila, K. Phadnis, A. Patterson, A. Jeff, and . Bilmes, Consensus ranking under the exponential model, 2012.

[. Page, S. Brin, R. Motwani, and T. Winograd, The PageRank citation ranking : Bringing order to the web, 1999.

[. Raschid, Y. Wu, W. Lee, M. E. Vidal, P. Tsaparas et al., Ranking target objects of navigational queries, Proceedings of the eighth ACM international workshop on Web information and data management , WIDM '06, pp.27-34, 2006.
DOI : 10.1145/1183550.1183558

[. Richardson and P. Domingos, The Intelligent surfer : Probabilistic Combination of Link and Content Information in PageRank, In : NIPS, pp.1441-1448, 2001.

W. Eric, T. Sayers, . Barrett, A. Dennis, E. Benson et al., Database resources of the national center for biotechnology information, Nucleic acids research 39, pp.38-51, 2011.

[. Shafer, T. Isganitis, and G. Yona, Hubs of knowledge : using the functional link structure in Biozon to mine for biologically significant entities, BMC Bioinformatics, vol.7, issue.1, p.71, 2006.
DOI : 10.1186/1471-2105-7-71

J. Neil and . Sloane, The on-line encyclopedia of integer sequences, 2003.

L. Arthur-steen, A. Seebach, A. Lynn, and . Steen, Counterexamples in topology, 1978.

[. Starlinger, B. Brancotte, S. Cohen-boulakia, and U. Leser, Similarity search for scientific workflows, Proceedings of the VLDB Endowment, p.12, 2014.
DOI : 10.14778/2732977.2732988
URL : https://hal.archives-ouvertes.fr/hal-01066046

Q. Michael, C. Stearns, . Price, A. Kent, . Spackman et al., SNOMED clinical terms : overview of the development process and project status, Proceedings of the AMIA Symposium, p.662, 2001.

]. W. Ste+15 and . Stein, Sage Mathematics Software (Version 6.5) The Sage Development Team

]. Sub+03, S. Subramaniam, P. Mukherjea, B. Kankar, . Srivastava et al., Information extraction from biomedical literature : methodology, evaluation and an application, Proceedings of the twelfth international conference on Information and knowledge management, pp.410-417, 2003.

M. [. Shneiderman and . Wattenberg, Ordered treemap layouts, IEEE Symposium on Information Visualization, 2001. INFOVIS 2001., pp.73-78, 2001.
DOI : 10.1109/INFVIS.2001.963283

[. Schalekamp and . Anke-van-zuylen, Rank Aggregation: Together We're Strong, In : ALENEX. SIAM, pp.38-51, 2009.
DOI : 10.1137/1.9781611972894.4

[. Tu and H. Shen, Visualizing Changes of Hierarchical Data using Treemaps, Visualization and Computer Graphics, pp.1286-1293, 2007.
DOI : 10.1109/TVCG.2007.70529

[. Varadarajan, V. Hristidis, L. Raschid, M. Vidal, and L. Ibáñez-et-héctor-rodríguez-drumond, Flexible and efficient querying and ranking on hyperlinked data sources, Proceedings of the 12th International Conference on Extending Database Technology Advances in Database Technology, EDBT '09, pp.553-564, 2009.
DOI : 10.1145/1516360.1516425

A. Van-zuylen, P. David, and . Williamson, Deterministic Pivoting Algorithms for Constrained Ranking and Clustering Problems, Mathematics of Operations Research, vol.34, issue.3, pp.594-620, 2009.
DOI : 10.1287/moor.1090.0385

L. Patricia, . Whetzel, F. Natalya, . Noy, H. Nigam et al., Bio- Portal : enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications, Nucleic acids research 39, pp.541-545, 2011.

Y. Bo, Bioinformatics analysis and consensus ranking for biological high throughput data, Thèse de doct, 2014.

[. Yu and R. Buyya, A taxonomy of scientific workflow systems for grid computing, ACM SIGMOD Record, vol.34, issue.3, pp.44-49, 2005.
DOI : 10.1145/1084805.1084814