Discrete stochastic model for the generation of axonal trees, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2014. ,
DOI : 10.1109/EMBC.2014.6945193
URL : https://hal.archives-ouvertes.fr/hal-01060580
Axonal Tree Classication Using an Elastic Shape Analysis Based Distance, Proc. IEEE ISBI, 2014. ,
Tree-like Shapes Distance Using the Elastic Shape Analysis Framework, Procedings of the British Machine Vision Conference 2013, 2013. ,
DOI : 10.5244/C.27.69
URL : https://hal.archives-ouvertes.fr/hal-00875475
Axon extraction from fluorescent confocal microscopy images, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), 2012. ,
DOI : 10.1109/ISBI.2012.6235660
URL : https://hal.archives-ouvertes.fr/hal-00666211
nous avons présenté une méthode de comparaison d'arbres qui ,
Cependant, le process biologique se produit en 4D (3D plus temps) Donc, nous devons d'abord étendre le modèle à la 3D. Ensuite, si nous considérons des séquences 3D d'axones qui se développent dans le cerveau, nous pourrions ajouter le temps aussi. Cela augmenterait la complexité du modèle, notamment pour l'estimation des paramètres. Finalement, d'autres processus biologiques pourraient être ajoutés au modèle, comme la variation de la sensibilité des cônes de croissance au champ d'attraction chimique, Bibliography [Andersson-Engels 1997] S. Andersson-Engels, C. af Klinteberg, K. Svanberg and S. Svanberg. In vivo uorescence imaging for tissue diagnostics ,
NeuroMorpho.Org: A Central Resource for Neuronal Morphologies, Journal of Neuroscience, vol.27, issue.35, pp.9247-9251, 2007. ,
DOI : 10.1523/JNEUROSCI.2055-07.2007
Principles of neural science, 2000. ,
Tree2Tree: Neuron segmentation for generation of neuronal morphology, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp.41-61, 2010. ,
DOI : 10.1109/ISBI.2010.5490289
Path2Path: Hierarchical path-based analysis for neuron matching, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp.48-94, 2011. ,
DOI : 10.1109/ISBI.2011.5872569
Spatial Interaction and the Statistical Analysis of Lattice Systems, Journal of the Royal Statistical Society, Series B, vol.36, issue.2, p.192236, 1974. ,
Quantifying neuronal size: Summing up trees and splitting the branch difference, Seminars in Cell & Developmental Biology, vol.19, issue.6, pp.485493-485519, 2008. ,
DOI : 10.1016/j.semcdb.2008.08.005
Caractérisation d'hrp48, une protéine de liaison aux arns, lors de la morphogenése axonale chez la drosophile, pp.24-33, 2012. ,
Myosin II Activity Facilitates Microtubule Bundling in the Neuronal Growth Cone Neck, Developmental Cell, vol.15, issue.1, p.163169, 2008. ,
DOI : 10.1016/j.devcel.2008.05.016
Chemotropic Responses of Retinal Growth Cones Mediated by Rapid Local Protein Synthesis and Degradation, Neuron, vol.32, issue.6, p.10131026, 2001. ,
DOI : 10.1016/S0896-6273(01)00551-7
Mutations in the prolin 1 gene cause familial amyotrophic lateral sclerosis, Nature, vol.488, pp.499503-2012 ,
A comparative study of supervised evaluation criteria for image segmentation, p.73, 2004. ,
Synapse formation in developing neural circuits, Curr Top Dev Biol, vol.87, p.5379, 2009. ,
Tripartite Mushroom Body Architecture Revealed by Antigenic Markers, Learn Mem, vol.5, p.3851, 1998. ,
Limited availability of ZBP1 restricts axonal mRNA localization and nerve regeneration capacity, EMBO J, vol.30, pp.4665-4677, 2011. ,
Automated reconstruction of neuronal morphology: An overview, Brain Research Reviews, vol.67, issue.1-2, pp.194-102, 2011. ,
DOI : 10.1016/j.brainresrev.2010.11.003
Geometries on Spaces of Treelike Shapes, Proc. 10th Asian conference on Computer vision, pp.160173-51, 2010. ,
DOI : 10.1016/j.media.2010.03.004
Fundamental Geodesic Deformations in Spaces of Treelike Shapes, 2010 20th International Conference on Pattern Recognition, p.51, 2010. ,
DOI : 10.1109/ICPR.2010.513
Toward a Theory of Statistical Tree-Shape Analysis, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.35, issue.8, p.2013, 2013. ,
DOI : 10.1109/TPAMI.2012.265
Multiscale vessel enhancement ltering, Proc. Medical Image Computing and Computer Assisted Intervention, p.64, 1998. ,
The cytoskeletal and signaling mechanisms of axon collateral branching, Developmental Neurobiology, vol.9, issue.1, p.201220, 2011. ,
DOI : 10.1002/dneu.20852
Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images*, Journal of Applied Statistics, vol.1, issue.5-6, p.721741, 1984. ,
DOI : 10.1109/TIT.1972.1054786
The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron, Neuroinformatics, vol.15, issue.5, p.233245, 2011. ,
DOI : 10.1007/s12021-011-9117-y
Developmental regulation of axon branching in the vertebrate nervous system, Development, vol.138, issue.2, p.183195, 2011. ,
DOI : 10.1242/dev.046441
Image registration: Principles, tools and methods, 2012. ,
DOI : 10.1007/978-1-4471-2458-0
Semi-Automated Quantication of Axonal Densities in Labeled CNS Tissue, Journal of Neuroscience Methods, vol.155, pp.172179-172224, 2006. ,
Comparison of texture features based on Gabor filters, IEEE Transactions on Image Processing, vol.11, issue.10, p.11601167, 2002. ,
DOI : 10.1109/TIP.2002.804262
The Tree edit distance, a Measure for Quantifying Neuronal Morphology, Neuroinformatics, vol.7, issue.86, pp.179190-179237, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-01108292
Molecular motors in neurons: transport mechanisms and roles in brain function, 2010. ,
Comprehensive maps of Drosophila higher olfactory centers: spatially segregated fruit and pheromone representation, Bibliography Cell, vol.128, p.11871203, 2007. ,
The Electrotonic Structure of Pyramidal Neurons Contributing to Prefrontal Cortical Circuits in Macaque Monkeys Is Signicantly Altered in Aging, Cerebral Cortex, vol.19, p.22482268, 2009. ,
The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions, Neuroinformatics, vol.9, issue.2-3, p.143157, 2011. ,
A stochastic model of neuronal growth cone guidance regulated by multiple sensors, Journal of Theoretical Biology, vol.266, issue.4, pp.712722-55, 2010. ,
DOI : 10.1016/j.jtbi.2010.07.036
NETMORPH: A Framework for the Stochastic Generation of Large Scale Neuronal Networks With Realistic Neuron Morphologies, Neuroinformatics, vol.12, issue.4, p.56, 2009. ,
DOI : 10.1007/s12021-009-9052-3
The Hungarian method for the assignment problem, Naval Research Logistics Quarterly, vol.3, issue.1-2, pp.83-97, 1955. ,
DOI : 10.1002/nav.3800020109
Structure-based RNA Function Prediction Using Elastic Shape Analysis, 2011 IEEE International Conference on Bioinformatics and Biomedicine, 2011. ,
DOI : 10.1109/BIBM.2011.119
Building Skeleton Models via 3-D Medial Surface Axis Thinning Algorithms, CVGIP: Graphical Models and Image Processing, vol.56, issue.6, p.462478, 1994. ,
DOI : 10.1006/cgip.1994.1042
Joint Shape and Texture Analysis of Objects Boundaries in Images Using a Riemannian Approach, Proc, 2008. ,
Protein structure alignment using elastic shape analysis, Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB '10, 2010. ,
DOI : 10.1145/1854776.1854790
The trip of the tip: understanding the growth cone machinery, Nature Reviews Molecular Cell Biology, vol.14, issue.5, p.332343, 2009. ,
DOI : 10.1038/nrm2679
Molecular mechanisms underlying neural circuit formation, Current Opinion in Neurobiology, vol.19, issue.2, p.162167, 2009. ,
DOI : 10.1016/j.conb.2009.04.004
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716433
The Interscutularis Muscle Connectome, PLoS Biology, vol.58, issue.2, 2009. ,
DOI : 10.1371/journal.pbio.1000032.sg006
Imp promotes axonal remodeling by regulating prolin mRNA during Drosophila brain development, press, 2014. ,
Axon extraction from fluorescent confocal microscopy images, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), p.2012, 2012. ,
DOI : 10.1109/ISBI.2012.6235660
URL : https://hal.archives-ouvertes.fr/hal-00666211
Tree-like Shapes Distance Using the Elastic Shape Analysis Framework, Procedings of the British Machine Vision Conference 2013, 2013. ,
DOI : 10.5244/C.27.69
URL : https://hal.archives-ouvertes.fr/hal-00875475
Axonal Tree Classication Using an Elastic Shape Analysis Based Distance, Proc. IEEE International Symposium on Biomedical Imaging, p.18, 2014. ,
DOI : 10.1109/isbi.2014.6868004
Discrete stochastic model for the generation of axonal trees, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, p.18, 2014. ,
DOI : 10.1109/EMBC.2014.6945193
URL : https://hal.archives-ouvertes.fr/hal-01060580
An Algorithm for Ranking all the Assignments in Order of Increasing Cost, Bibliography Operations Research, vol.16, p.682687, 1968. ,
Initial trajectories of sensory axons toward laminar targets in the developing mouse spinal cord, The Journal of Comparative Neurology, vol.380, issue.2, p.215229, 1997. ,
DOI : 10.1002/(SICI)1096-9861(19970407)380:2<215::AID-CNE5>3.3.CO;2-J
RTED, Proceedings of the VLDB Endowment, vol.5, issue.4, p.334345, 2011. ,
DOI : 10.14778/2095686.2095692
An algorithm for ranking assignments using reoptimization, Computers & Operations Research, vol.35, issue.11, pp.3714-3726, 2008. ,
DOI : 10.1016/j.cor.2007.04.008
Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model, Bioinformatics, vol.26, issue.12, 2010. ,
DOI : 10.1093/bioinformatics/btq212
Assignment problems: A golden anniversary survey, European Journal of Operational Research, vol.176, issue.2, pp.774-793, 2007. ,
DOI : 10.1016/j.ejor.2005.09.014
Measures and Meta-Measures for the Supervised Evaluation of Image Segmentation, 2013 IEEE Conference on Computer Vision and Pattern Recognition, 2013. ,
DOI : 10.1109/CVPR.2013.277
Gap lling of 3D microvascular networks by tensor voting, IEEE Trans Med Imaging, vol.27, issue.71, pp.674687-69, 2008. ,
Automated reconstruction of three-dimensional neuronal morphology from laser scanning microscopy images, Methods, vol.30, issue.1, p.94105, 2003. ,
DOI : 10.1016/S1046-2023(03)00011-2
A proposal for the morphological classication and nomenclature of neurons, Neural Regeneration Research, vol.6, pp.2011-53, 2011. ,
Dynamic Programming Algorithm Optimization for Spoken Word Recognition, IEEE Transactions on Acoustics, Speech and Signal Processing, vol.26, p.4349, 1978. ,
S1 to S2 hind- and forelimb projections in the agouti somatosensory cortex: Axon fragments morphological analysis, Journal of Chemical Neuroanatomy, vol.40, issue.4, p.339345, 2010. ,
DOI : 10.1016/j.jchemneu.2010.09.005
Mixed memory Markov models: decomposing complex stochastic processes as mixtures of simpler ones, 1998. ,
Generic modeling of chemotactic based self-wiring of neural networks, Neural Networks, vol.13, issue.2, pp.185199-54, 2000. ,
DOI : 10.1016/S0893-6080(99)00084-2
The tree-to-tree editing problem, Information Processing Letters, vol.6, issue.6, pp.184-186, 1977. ,
DOI : 10.1016/0020-0190(77)90064-3
A systematic analysis of performance measures for classification tasks, Information Processing & Management, vol.45, issue.4, pp.427-437, 2009. ,
DOI : 10.1016/j.ipm.2009.03.002
Shape Analysis of Elastic Curves in Euclidean Spaces, IEEE Transactions on Pattern Analysis and Machine Intelligence, vol.33, issue.7, p.14151428, 2011. ,
DOI : 10.1109/TPAMI.2010.184
The Tree-to-Tree Correction Problem, Journal of the ACM, vol.26, issue.3, pp.422-433, 1979. ,
DOI : 10.1145/322139.322143
Image matching as a diusion process: an analogy with maxwellâs demons, Medical Image Analysis, vol.2, issue.3, p.243260, 1998. ,
Subvoxel precise skeletons of volumetric data based on fast marching methods, Medical Physics, vol.22, issue.1, 2007. ,
DOI : 10.1118/1.2409238
Pilocarpine induced seizures cause selective time dependent changes to adult generated hippocampal dentate granule cells, J Neurosci, vol.27, p.75417552, 2007. ,
DYNAMIC LOCAL TRACING FOR 3D AXON CURVILINEAR STRUCTURE DETECTION FROM MICROSCOPIC IMAGE STACK, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007. ,
DOI : 10.1109/ISBI.2007.356793
New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales, Neuroscience, vol.136, issue.3, pp.661680-661721, 2005. ,
DOI : 10.1016/j.neuroscience.2005.05.053
Introduction to mechanisms of neural circuit formation, Frontiers in Molecular Neuroscience, vol.6, 2013. ,
DOI : 10.3389/fnmol.2013.00012
Shape Preserving Filament Enhancement Filtering, Proc. Medical Image Computing and Computer Assisted Intervention, p.64, 2001. ,
DOI : 10.1007/3-540-45468-3_92
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.150.9361
Prolin and the Abl tyrosine kinase are required for motor axon outgrowth in the Drosophila embryo, Neuron, vol.22, p.291299, 1999. ,
Image analysis, random elds and markov chain monte carlo methods: A mathematical introduction (stochastic modelling and applied probability), p.123, 2006. ,
Simple Fast Algorithms for the Editing Distance between Trees and Related Problems, SIAM Journal on Computing, vol.18, issue.6, p.12451262, 1989. ,
DOI : 10.1137/0218082
A constrained edit distance between unordered labeled trees, Algorithmica, vol.42, issue.6, pp.205-222, 1996. ,
DOI : 10.1007/BF01975866