@. Te, te [excellent] ? text protocol.out ? generateJobs.in [mismatched] ? text protocol.out ? simuBloch.te [broken] ? text protocol.out ? simuBloch.tr [broken] ? text protocol.out ? sorteo emission.jobs [broken] ? text protocol.out ? sorteo single end.protocol [mismatched] ? text protocol

M. Acher, P. Collet, P. Lahire, and &. R. France, FAMILIAR: A domain-specific language for large scale management of feature models, Science of Computer Programming, vol.78, issue.6, pp.657-681, 2012.
DOI : 10.1016/j.scico.2012.12.004
URL : https://hal.archives-ouvertes.fr/hal-00767175

A. Akram, D. Meredith, and &. R. Allan, Evaluation of BPEL to Scientific Workflows, Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGRID'06), pp.269-274, 2006.
DOI : 10.1109/CCGRID.2006.44

A. , ]. J. Alameda, M. Christie, G. Fox, J. Futrelle et al., The Open Grid Computing Environments collaboration: portlets and services for science gateways, Concurrency and Computation: Practice & Experience (CCPE), vol.19, issue.6, pp.921-942, 2007.

]. J. Aldrich-00 and . Aldrich, Challenge Problems for Separation of Concerns, Proceedings , OOPSLA 2000 Workshop on Advanced Separation of Concerns, 2000.

M. Alt and &. A. Hoheisel, A Grid Workflow Language Using High-Level Petri Nets, 6th international conference on Parallel processing and applied mathematics(PPAM'05), p.715722, 2005.
DOI : 10.1007/11752578_86

I. Altintas, A. Birnbaum, K. Baldridge, W. Sudholt, M. Miller et al., A Framework for the Design and Reuse of Grid Workflows, Scientific Applications of Grid Computing(LNCS), pp.295-299, 2005.
DOI : 10.1007/11423287_11

]. A. Bachmann, M. Kunde, M. Litz, and &. A. Schreiber, Advances in generalization and decoupling of software parts in a scientific simulation workflow system, The Fourth International Conference on Advanced Engineering Computing and Applications in Sciences, pp.34-38, 2010.

F. Balligand and &. V. Monfort, A concrete solution for web services adaptability using policies and aspects, Proceedings of the 2nd international conference on Service oriented computing , ICSOC '04, pp.134-142, 2004.
DOI : 10.1145/1035167.1035187

R. Barga and &. D. Gannon, Scientific versus Business Workflows, Workflows for e-Science [Taylor 07a], chapitre 2, pp.9-16
DOI : 10.1007/978-1-84628-757-2_2

A. Barker and &. J. Van-hemert, Scientific Workflow: A Survey and Research Directions, Proceedings of the 7th international conference on Parallel processing and applied mathematics(PPAM), PPAM'O7, pp.746-753, 2008.
DOI : 10.1007/978-3-540-68111-3_78

D. Batory and &. S. Malley, The design and implementation of hierarchical software systems with reusable components, ACM Transactions on Software Engineering and Methodology, vol.1, issue.4, pp.355-398, 1992.
DOI : 10.1145/136586.136587

D. Batory, J. N. Sarvela, and &. A. Rauschmayer, Scaling step-wise refinement, 25th International Conference on Software Engineering (ICSE '03), pp.187-197, 2003.
DOI : 10.1109/icse.2003.1201199
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.101.2752

S. Bechhofer, D. De-roure, M. Gamble, C. Goble, and &. I. Buchan, Research Objects: Towards Exchange and Reuse of Digital Knowledge. The Future of the Web for Collaborative Science, 2010.

M. Becht, T. Gurzki, J. Klarmann, and &. M. Muscholl, ROPE: role oriented programming environment for multiagent systems, Proceedings Fourth IFCIS International Conference on Cooperative Information Systems. CoopIS 99 (Cat. No.PR00384), pp.325-333, 1999.
DOI : 10.1109/COOPIS.1999.792181

O. Belakhdar and &. J. Ayel, Modelling approach and tool for designing protocols for automated cooperation in multi-agent systems, Agents Breaking Away(LNCS), pp.100-115, 1996.
DOI : 10.1007/BFb0031849

K. Belhajjame, O. Corcho, D. Garijo, J. Zhao, P. Missier et al., Workflow-Centric Research Objects: A First-Class Citizen in the Scholarly Discourse, ESWC2012 Workshop on the Future of Scholarly Communication in the Semantic Web(SePublica2012), pp.1-12, 2012.

F. Cattin, J. Bellet, &. C. Montagnat, and . Odet, Magnetic Resonance Imaging (MRI) Simulation on a Grid Computing Architecture, Biogrid'03, proceedings of the IEEE CCGrid03, pp.582-587, 2003.
URL : https://hal.archives-ouvertes.fr/hal-00476894

G. Cattin, B. Collewet, H. Belaroussi, &. C. Saint-jalmes, and . Odet, The SIMRI project: a versatile and interactive MRI simulator, Journal of Magnetic Resonance, vol.173, issue.1, pp.97-115, 2005.
DOI : 10.1016/j.jmr.2004.09.027

M. R. Berthold, N. Cebron, F. Dill, T. R. Gabriel, T. Kötter et al., KNIME: The Konstanz Information Miner, GfKl(GfKl) Studies in Classific, pp.319-326, 2007.
DOI : 10.1007/978-3-540-78246-9_38

S. Bowers and &. B. Ludäscher, Actor-Oriented Design of Scientific Workflows, 24th Intl. Conf. on Conceptual Modeling(ER'05), pp.369-384, 2005.
DOI : 10.1007/11568322_24

S. Bowers, B. Ludäscher, A. H. Ngu, and &. T. Critchlow, Enabling Scientific Workflow Reuse through Structured Composition of Dataflow and Control-Flow, IEEE Workshop on Workflow and Data Flow for Scientific Applications(SciFlow), 2006.

G. Cabri, L. Ferrari, and &. L. Leonardi, Agent role-based collaboration and coordination: a survey about existing approaches, 2004 IEEE International Conference on Systems, Man and Cybernetics (IEEE Cat. No.04CH37583), pp.5473-5478, 2004.
DOI : 10.1109/ICSMC.2004.1401064

S. P. Callahan, P. J. Crossno, J. Freire, C. E. Scheidegger, C. T. Silva et al., VisTrails, Proceedings of the 2006 ACM SIGMOD international conference on Management of data , SIGMOD '06, pp.135-142, 2005.
DOI : 10.1145/1142473.1142574

M. Cannataro, P. H. Guzzi, T. Mazza, G. Tradigo, and &. P. Veltri, Using ontologies for preprocessing and mining spectra data on the Grid, Future Generation Computer Systems, vol.23, issue.1, pp.55-60, 2007.
DOI : 10.1016/j.future.2006.04.011

F. Cao, O. Commowick, E. Bannier, J. Ferré, G. Edan et al., MRI Estimation of T1 Relaxation Time Using a Constrained Optimization Algorithm, Multimodal Brain Image Analysis(LNCS), pp.203-214, 2012.
URL : https://hal.archives-ouvertes.fr/inserm-00723849

J. J. Carroll, I. Dickinson, C. Dollin, D. Reynolds, A. Seaborne et al., Jena, Proceedings of the 13th international World Wide Web conference on Alternate track papers & posters , WWW Alt. '04, pp.74-83, 2004.
DOI : 10.1145/1013367.1013381

]. N. Cerezo and &. J. Montagnat, Scientific Workflow Reuse through Conceptual Workflows, Proceedings of the 6th Workshop on Workflows in Support of Large-Scale Science, pp.1-10, 2011.
DOI : 10.1145/2110497.2110499
URL : https://hal.archives-ouvertes.fr/hal-00677831

]. N. Cerezo, J. Montagnat, and &. M. Blay-fornarino, Computer-Assisted Scientific Workflow Design, Journal of Grid Computing, vol.3, issue.2, pp.585-610, 2013.
DOI : 10.1007/s10723-013-9264-5
URL : https://hal.archives-ouvertes.fr/hal-00833692

A. Charfi and &. M. Mezini, Aspect-Oriented Web Service Composition with AO4BPEL, European Conference On Web Services(ECOW), 2004.
DOI : 10.1007/978-3-540-30209-4_13

P. P. Chen, The entity-relationship model---toward a unified view of data, ACM Transactions on Database Systems, vol.1, issue.1, pp.9-36, 1976.
DOI : 10.1145/320434.320440

G. Chin, C. Sivaramakrishnan, T. Critchlow, K. Schuchardt, and &. A. Ngu, Scientist-Centered Workflow Abstractions via Generic Actors, Workflow Templates, and Context-Awareness for Groundwater Modeling and Analysis, 2011 IEEE World Congress on Services, pp.176-183, 2011.
DOI : 10.1109/SERVICES.2011.31

]. P. Clements and &. L. Northrop, Software Product Lines: Practices and Patterns, 2001.

G. Coady, M. Kiczales, &. G. Feeley, and . Smolyn, Using aspectC to improve the modularity of path-specific customization in operating system code, ACM SIGSOFT Software Engineering Notes, vol.26, issue.5, pp.88-98, 2001.
DOI : 10.1145/503271.503223

O. Corby, R. Dieng, C. Faron-zucker, and &. F. Gandon, Ontology-based Approximate Query Processing for Searching the Semantic Web with CORESE, 2005.
URL : https://hal.archives-ouvertes.fr/inria-00070387

]. V. Curcin and &. M. Ghanem, Scientific workflow systems - can one size fit all?, 2008 Cairo International Biomedical Engineering Conference, pp.1-9, 2008.
DOI : 10.1109/CIBEC.2008.4786077

]. K. Czarnecki and &. S. Helsen, Classification of Model Transformation Approaches, 2nd OOPSLA03 Workshop on Generative Techniques in the Context of MDA(OOPSLA'03), 2003.

A. J. De-roo, M. F. Hendricks, W. K. Havinga, P. E. Durr, and &. M. Bergmans, Compose*: a Language-and Platform-Independent Aspect Compiler for Composition Filters, First International Workshop on Advanced Software Development Tools and Techniques, pp.1-14, 2008.

E. Deelman, G. Singh, M. Su, J. Blythe, Y. Gil et al., Pegasus: A Framework for Mapping Complex Scientific Workflows onto Distributed Systems, Scientific Programming, vol.13, issue.3, pp.219-237, 2005.
DOI : 10.1155/2005/128026

E. Deelman, D. Gannon, M. Shields, and &. I. Taylor, Workflows and e-Science: An overview of workflow system features and capabilities, Future Generation Computer Systems, vol.25, issue.5, pp.528-540, 2009.
DOI : 10.1016/j.future.2008.06.012

]. B. Demsky and &. M. Rinard, Role-based exploration of object-oriented programs, Proceedings of the 24th international conference on Software engineering , ICSE '02, pp.313-324, 2002.
DOI : 10.1145/581376.581379

E. W. Dijkstra, On the Role of Scientific Thought, Selected Writings on Computing: A personal Perspective, pp.60-66, 1982.
DOI : 10.1007/978-1-4612-5695-3_12

W. Emmerich, B. Butchart, L. Chen, B. Wassermann, and &. S. Price, Grid Service Orchestration Using the Business Process Execution Language (BPEL), Journal of Grid Computing, vol.31, issue.5, pp.3-4, 2005.
DOI : 10.1007/s10723-005-9015-3

T. Fahringer, J. Qin, and &. S. Hainzer, Specification of grid workflow applications with AGWL: an Abstract Grid Workflow Language, CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005., pp.676-685, 2005.
DOI : 10.1109/CCGRID.2005.1558629

T. Fahringer, R. Prodan, R. Duan, J. Hofer, F. Nadeem et al., ASKALON: A Development and Grid Computing Environment for Scientific Workflows, Workflows for e-Science [Taylor 07a], chapitre 27, pp.450-471
DOI : 10.1007/978-1-84628-757-2_27

E. A. Feigenbaum and &. P. Mccorduck, The fifth generation : artificial intelligence and Japan's computer challenge to the world, 1983.

D. Fensel, F. Van-harmelen, I. Horrocks, D. L. Mcguinness, and &. F. Patel-schneider, OIL: an ontology infrastructure for the Semantic Web, IEEE Intelligent Systems, vol.16, issue.2, pp.38-45, 2001.
DOI : 10.1109/5254.920598

G. Forestier, A. Marion, H. Benoit-cattin, P. Clarysse, D. Friboulet et al., Sharing object models for multi-modality medical image simulation: A semantic approach, 2011 24th International Symposium on Computer-Based Medical Systems (CBMS), pp.1-6, 2011.
DOI : 10.1109/CBMS.2011.5999167

A. Gaignard, Distributed knowledge sharing and production through collaborative e-Science platforms, 2013.
URL : https://hal.archives-ouvertes.fr/tel-00827926

]. E. Gamma, R. Helm, R. Johnson, and &. J. Vlissides, Design Patterns: Abstraction and Reuse of Object-Oriented Design, Medical Image Analysis (MedIA), vol.707, pp.406-431, 1993.

A. Gangemi, N. Guarino, C. Masolo, A. Oltramari, and &. L. Schneider, Sweetening Ontologies with DOLCE, Knowledge Engineering and Knowledge Management: Ontologies and the Semantic Web(LNCS), pp.166-181, 2002.
DOI : 10.1007/3-540-45810-7_18
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.11.6038

]. A. García-silva-12, O. García-silva, H. Corcho, &. A. Alani, and . Gómez-pérez, Review of the state of the art: discovering and associating semantics to tags in folksonomies, The Knowledge Engineering Review, vol.2, issue.01, pp.57-85, 2012.
DOI : 10.1016/j.websem.2007.11.004

D. Garijo and &. Y. Gil, A new approach for publishing workflows, Proceedings of the 6th workshop on Workflows in support of large-scale science, WORKS '11, pp.47-56, 2011.
DOI : 10.1145/2110497.2110504

]. D. Garijo, O. Corcho, and &. Y. Gil, Detecting common scientific workflow fragments using templates and execution provenance, Proceedings of the seventh international conference on Knowledge capture, K-CAP '13, pp.33-40, 2013.
DOI : 10.1145/2479832.2479848
URL : http://oa.upm.es/15021/

]. W. Gaspar, L. Machado-da-silva, R. M. Braga, and &. F. Campos, SW- Ontology -A Proposal for Semantic Modeling of a Scientific Workflow Management System, Proceedings of the 12th International Conference on Enterprise Information Systems, pp.115-120, 2010.

D. Georgakopoulos, M. Hornick, and &. A. Sheth, An overview of workflow management: From process modeling to workflow automation infrastructure, Distributed and Parallel Databases, pp.119-153, 1995.
DOI : 10.1007/BF01277643

B. Gibaud, G. Kassel, M. Dojat, B. Batrancourt, F. Michel et al., NeuroLOG: sharing neuroimaging data using an ontology-based federated approach, American Medical Informatics Association(AMIA'2011), p.472480, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00683087

]. Y. Gil-11a, J. Gil, P. A. Kim, J. Gonzales-calero, J. Kim et al., A semantic framework for automatic generation of computational workflows using distributed data and component catalogues, Journal of Experimental & Theoretical Artificial Intelligence, vol.8, issue.4, pp.389-467, 2011.
DOI : 10.1002/cpe.1050

]. Y. Gil-11b, V. Gil, K. Ratnakar, J. Jihie, E. Moody et al., Wings: Intelligent Workflow-Based Design of Computational Experiments, IEEE Intelligent System, vol.26, issue.1, pp.62-72, 2011.

T. Glatard, J. Montagnat, D. Lingrand, and &. X. Pennec, Flexible and efficient workflow deployement of data-intensive applications on grids with MOTEUR, International Journal of High Performance Computing Applications (IJHPCA) Special issue on Special Issue on Workflows Systems in Grid Environments, vol.22, issue.3, pp.347-360, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00459130

T. Glatard, C. Lartizien, B. Gibaud, R. Ferreira-da-silva, G. Forestier et al., A Virtual Imaging Platform for Multi-Modality Medical Image Simulation, IEEE Transactions on Medical Imaging, vol.32, issue.1, pp.110-118, 2013.
DOI : 10.1109/TMI.2012.2220154
URL : https://hal.archives-ouvertes.fr/inserm-00762497

A. Goderis, U. Sattler, P. Lord, and &. C. Goble, Seven Bottlenecks to Workflow Reuse and Repurposing, The Semantic Web ISWC 2005(LNCS), pp.323-337, 2005.
DOI : 10.1007/11574620_25

J. Goecks, A. Nekrutenko, and &. J. Taylor, Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, Genome Biology, vol.11, issue.8, p.86, 2010.
DOI : 10.1186/gb-2010-11-8-r86

K. Görlach, M. Sonntag, D. Karastoyanova, F. Leymann, and &. M. Reiter, Conventional Workflow Technology for Scientific Simulation, Guide to e-Science, Computer Communications and Networks, pp.323-352
DOI : 10.1007/978-0-85729-439-5_12

]. P. Haase-10, T. Haase, &. M. Mathäss, and . Ziller, An evaluation of approaches to federated query processing over linked data, Proceedings of the 6th International Conference on Semantic Systems, I-SEMANTICS '10, pp.1-59, 2010.
DOI : 10.1145/1839707.1839713

W. Harrison and &. H. Ossher, Subject-oriented programming: a critique of pure objects, Proceedings of the eighth annual conference on Objectoriented programming systems, languages, and applications(OOPSLA '93), pp.411-428, 1993.

O. Hartig, J. Sequeda, J. Taylor, and &. P. Sinclair, How to consume linked data on the web, Proceedings of the 19th international conference on World wide web, WWW '10, pp.1347-1348, 2010.
DOI : 10.1145/1772690.1772923

M. Hauder, Y. Gil, Y. Liu, R. Sethi, and &. H. Jo, Making data analysis expertise broadly accessible through workflows, Proceedings of the 6th workshop on Workflows in support of large-scale science, WORKS '11, pp.77-86, 2011.
DOI : 10.1145/2110497.2110507
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.222.8840

W. L. Hürsch and &. C. Lopes, Separation of Concerns, 1995.

J. A. Jensen, Simulation of advanced ultrasound systems using Field II, 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821), pp.636-639, 2004.
DOI : 10.1109/ISBI.2004.1398618

P. Kacsuk, Z. Farkas, M. Kozlovszky, G. Hermann, A. Balasko et al., WS-PGRADE/gUSE Generic DCI Gateway Framework for a Large Variety of User Communities, Journal of Grid Computing, vol.17, issue.2???4, pp.601-630, 2012.
DOI : 10.1007/s10723-012-9240-5

]. E. Kendall, Role modelling for agent system analysis, design, and implementation, Proceedings. First and Third International Symposium on Agent Systems Applications, and Mobile Agents, pp.204-218, 1999.
DOI : 10.1109/ASAMA.1999.805405

S. Kent, Model Driven Engineering, Integrated Formal Method(LNCS), pp.286-298, 2002.
DOI : 10.1007/3-540-47884-1_16

G. Kiczales, J. Lamping, A. Mendhekar, C. Maeda, C. Lopes et al., Aspect-Oriented Programming, Proceedings of the European Conference on Object-Oriented Programming, pp.220-242, 1997.

G. Kiczales, E. Hilsdale, J. Hugunin, M. Kersten, J. Palm et al., An Overview of AspectJ, European Conference on Object- Oriented Programming(ECOOP'01), pp.327-353, 2001.
DOI : 10.1007/3-540-45337-7_18

M. Kifer, G. Lausen, and &. J. Wu, Logical foundations of object-oriented and frame-based languages, Journal of the ACM, vol.42, issue.4, pp.741-843, 1995.
DOI : 10.1145/210332.210335

D. Krefting, T. Glatard, V. Korkhov, J. Montagnat, and &. S. Olabarriaga, Enabling Grid Interoperability at Workflow Level, Grid Workflow Workshop 2011(GWW'11), 2011.

B. B. Kristensen and &. K. Sterbye, Roles: conceptual abstraction theory and practical language issues, Theory and Practice of Object Systems, vol.2, issue.3, pp.143-160, 1996.
DOI : 10.1002/(SICI)1096-9942(1996)2:3<143::AID-TAPO2>3.0.CO;2-X

A. Kusiak, T. Letsche, and &. A. Zakarian, Data modelling with IDEF1x, International Journal of Computer Integrated Manufacturing, vol.10, issue.6, pp.470-486, 1997.
DOI : 10.1080/095119297131039

P. Lando, A. Lapujade, G. Kassel, and &. F. Fürst, Towards a general ontology of computer programs, International Conference on Software and Data TechnologiesLee 00] E.A. Lee & S. Neuendorffer. MoML -A Modeling Markup Language in XML, Version 0.4, pp.25-27, 2000.

D. B. Lenat and &. R. Guha, The evolution of CycL, the Cyc representation language, ACM SIGART Bulletin, vol.2, issue.3, pp.84-87, 1991.
DOI : 10.1145/122296.122308

B. Ludäscher, I. Altintas, C. Berkley, D. Higgins, E. Jaeger et al., Scientific workflow management and the Kepler system, Scientific Workflow Management and the Kepler System. Concurrency and Computation, pp.1039-1065, 2006.
DOI : 10.1002/cpe.994

K. Maheshwari and &. J. Montagnat, Scientific workflows development using both visual-programming and scripted representations, International Workshop on Scientific Workflows(SWF'10), 2010.
URL : https://hal.archives-ouvertes.fr/hal-00677817

]. M. Malik, T. Fahringer, and &. R. Prodan, Semi-automatic Composition of Ontologies for ASKALON Grid Workflows, Euro-Par 2011: Parallel Processing Workshops, pp.169-180, 2012.
DOI : 10.1007/978-3-642-29737-3_20

]. A. Marion, G. Forestier, H. Liebgott, C. Lartizien, H. Benoit-cattin et al., Multimodality image simulation of biological models within VIP, 24th International Symposium on Computer-Based Medical Systems(CBMS), pp.1-6, 2011.

C. Masolo, S. Borgo, A. Gangemi, N. Guarino, A. Oltramari et al., The WonderWeb Library of Foundational Ontologies and the DOLCE ontology. WonderWeb Deliverable D18, Final Report, 2003.

C. J. Matheus, K. Baclawski, and &. M. Kokar, BaseVISor: A Triples-Based Inference Engine Outfitted to Process RuleML and R-Entailment Rules, 2006 Second International Conference on Rules and Rule Markup Languages for the Semantic Web (RuleML'06), pp.67-74, 2006.
DOI : 10.1109/RULEML.2006.6

]. D. Mcguinness, R. Fikes, J. Hendler, and &. L. Stein, DAML+OIL: an ontology language for the Semantic Web, IEEE Intelligent Systems, vol.17, issue.5, pp.72-80, 2002.
DOI : 10.1109/MIS.2002.1039835

S. Mcphillips, D. Bowers, &. B. Zinn, and . Ludäscher, Scientific workflow design for mere mortals, Future Generation Computer Systems, vol.25, issue.5, pp.541-551, 2009.
DOI : 10.1016/j.future.2008.06.013

J. Miller and &. J. Mukerji, MDA Guide Version 1.0.1, 2003.

]. P. Missier-10b, K. Missier, F. Wolstencroft, S. Tanoh, K. Bechhofer et al., Functional Units: Abstractions for Web Service Annotations, 2010 6th World Congress on Services, pp.306-313, 2010.
DOI : 10.1109/SERVICES.2010.21

J. Montagnat, B. Isnard, T. Glatard, K. Maheshwari, and &. M. Blay-fornarino, A data-driven workflow language for grids based on array programming principles, Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science, WORKS '09, pp.1-10, 2009.
DOI : 10.1145/1645164.1645171
URL : https://hal.archives-ouvertes.fr/hal-00677806

S. Mosser, M. Blay-fornarino, and &. R. France, Workflow Design using Fragment Composition (Crisis Management System Design through ADORE) Transactions on Aspect-Oriented Software Development (TAOSD) Special issue on Aspect Oriented Modeling, pp.1-34, 2010.

S. Mosser and &. M. Blay-fornarino, ???Adore???, a logical meta-model supporting business process evolution, Science of Computer Programming, vol.78, issue.8, pp.1-35, 2012.
DOI : 10.1016/j.scico.2012.06.009

R. Motik, &. I. Shearer, and . Horrocks, Hypertableau Reasoning for Description Logics, Journal of Artificial Intelligence Research, vol.36, pp.165-228, 2009.

F. Neubauer, A. Hoheisel, and &. J. Geiler, Workflow-based Grid applications, Future Generation Computer Systems, vol.22, issue.1-2, pp.1-6, 2005.
DOI : 10.1016/j.future.2005.08.002

E. Ogasawara, C. Paulino, L. Murta, C. Werner, and &. M. Mattoso, Experiment Line: Software Reuse in Scientific Workflows, Scientific and Statistical Database Management(LNCS), pp.264-272, 2009.
DOI : 10.1007/s10723-005-9010-8

T. Oinn, M. Addis, J. Ferris, D. Marvin, M. Greenwood et al., Delivering web service coordination capability to users, Proceedings of the 13th international World Wide Web conference on Alternate track papers & posters , WWW Alt. '04, pp.438-439, 2004.
DOI : 10.1145/1013367.1013514
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1.6550

]. G. Ortiz and &. F. Leymann, Combining WS-Policy and Aspect-Oriented Programming, Advanced Int'l Conference on Telecommunications and Int'l Conference on Internet and Web Applications and Services (AICT-ICIW'06), pp.143-149, 2006.
DOI : 10.1109/AICT-ICIW.2006.66

R. Pawlak, L. Duchien, G. Florin, and &. L. Seinturier, JAC: A Flexible Solution for Aspect-Oriented Programming in Java, Metalevel Architectures and Separation of Crosscutting Concerns(LNCS), pp.1-24
DOI : 10.1007/3-540-45429-2_1

N. Pessemier, L. Seinturier, and &. L. Duchien, A component-based and aspect-oriented model for software evolution, International Journal of Computer Applications in Technology, vol.31, issue.1/2, pp.94-105, 2008.
DOI : 10.1504/IJCAT.2008.017722
URL : https://hal.archives-ouvertes.fr/inria-00269895

K. Plankensteiner, J. Montagnat, and &. R. Prodan, IWIR, Proceedings of the 6th workshop on Workflows in support of large-scale science, WORKS '11, 2011.
DOI : 10.1145/2110497.2110509
URL : https://hal.archives-ouvertes.fr/hal-00677832

J. Qin and &. T. Fahringer, A novel domain oriented approach for scientific Grid workflow composition, 2008 SC, International Conference for High Performance Computing, Networking, Storage and Analysis, 2008.
DOI : 10.1109/SC.2008.5214432

T. Reenskaug, P. Wold, and &. O. Lehne, Working with objects: the OOram software engineering method, 1996.

C. Reese, J. Ortmann, S. Offermann, D. Moldt, K. Markwardt et al., Fragmented Workflows Supported by an Agent Based Architecture, Agent-Oriented Information Systems III(LNCS), pp.200-215, 2006.
DOI : 10.1007/11916291_14

A. Reilhac, C. Lartizien, N. Costes, S. Sans, C. Comtat et al., PET-SORTEO: A Monte Carlo-Based Simulator With High Count Rate Capabilities, IEEE Transactions on Nuclear Science, vol.51, issue.1, pp.46-52, 2004.
DOI : 10.1109/TNS.2003.823011

S. Sadiq, W. Sadiq, and &. M. Orlowska, Pockets of Flexibility in Workflow Specification, Conceptual Modeling ER 2001(LNCS), pp.513-526, 2001.
DOI : 10.1007/3-540-45581-7_38

D. Schumm, D. Karastoyanova, O. Kopp, F. Leymann, M. Sonntag et al., Process Fragment Libraries for Easier and Faster Development of Process-based Applications, Journal of Systems Integration, vol.2, issue.11 1, pp.39-55, 2011.
DOI : 10.20470/jsi.v2i1.83

D. Schumm, D. Dentsas, M. Hahn, D. Karastoyanova, F. Leymann et al., Web Service Composition Reuse through Shared Process Fragment Libraries, In Web Engineering(ICWE) LNCS, vol.7387, pp.498-501
DOI : 10.1007/978-3-642-31753-8_53
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.466.6301

L. Seinturier, P. Merle, D. Fournier, N. Dolet, V. Schiavoni et al., Reconfigurable SCA Applications with the FraSCAti Platform, 2009 IEEE International Conference on Services Computing, pp.268-275, 2009.
DOI : 10.1109/SCC.2009.27
URL : https://hal.archives-ouvertes.fr/inria-00397856

A. Shepitsen, J. Gemmell, B. Mobasher, and &. R. Burke, Personalized recommendation in social tagging systems using hierarchical clustering, Proceedings of the 2008 ACM conference on Recommender systems, RecSys '08, pp.259-266, 2008.
DOI : 10.1145/1454008.1454048

A. P. Silva, V. C. Borges, and &. M. Dantas, A framework for mobile grid environments based on semantic integration of ontologies and workflow-based applications, Infocomp Journal of Computer Science, vol.7, issue.1, pp.59-66, 2008.

Y. Singh and &. M. Sood, The Impact of the Computational Independent Model for Enterprise Information System Development, International Journal of Computer Applications, vol.11, issue.8, pp.24-28, 2010.
DOI : 10.5120/1602-2153

E. Sirin, B. Parsia, B. C. Grau, A. Kalyanpur, and &. Y. Katz, Pellet: A practical OWL-DL reasoner, Web Semantics: Science, Services and Agents on the World Wide Web (JOWS), pp.51-53, 2007.
DOI : 10.1016/j.websem.2007.03.004

A. Slominski, Adapting BPEL to Scientific Workflows, Workflows for e-Science [Taylor 07a], chapitre 14, pp.208-226
DOI : 10.1007/978-1-84628-757-2_14

M. Sonntag, D. Karastoyanova, and &. F. Leymann, The Missing Features of Workflow Systems for Scientific Computations, Proceedings of the 3rd Grid Workflow Workshop(GWW), pp.209-216, 2010.

M. Sonntag and &. D. Karastoyanova, Model-as-you-go: An Approach for an Advanced Infrastructure for Scientific Workflows, Journal of Grid Computing, vol.23, issue.2, pp.1-31, 2013.
DOI : 10.1007/s10723-013-9268-1

O. Spinczyk, A. Gal, and &. W. Schröder-preikschat, AspectC++: an aspectoriented extension to the C++ programming language, Proceedings of the Fortieth International Conference on Tools Pacific: Objects for internet, mobile and embedded applications(CRPIT'02), pp.53-60, 2002.

J. Sroka, J. Hidders, P. Missier, and &. C. Goble, A formal semantics for the Taverna 2 workflow model, Journal of Computer and System Sciences, vol.76, issue.6, pp.490-508, 2009.
DOI : 10.1016/j.jcss.2009.11.009

J. Tabary, S. Marache, S. Valette, W. P. Segars, and &. C. Lartizien, Realistic X-ray CT simulation of the XCAT phantom with SINDBAD, 2009 IEEE Nuclear Science Symposium Conference Record (NSS/MIC), 2009.
DOI : 10.1109/NSSMIC.2009.5401942
URL : https://hal.archives-ouvertes.fr/hal-00508844

]. I. Taylor-07a, E. Taylor, D. Deelman, &. M. Gannon, and . Shields, Workflows for e- Science, 2007.
DOI : 10.1007/978-1-84628-757-2

]. I. Taylor-07b, M. Taylor, I. Shields, &. A. Wang, and . Harrison, The Triana Workflow Environment: Architecture and Applications, Workflows for e-Science, pp.320-339
DOI : 10.1007/978-1-84628-757-2_20

G. Dojat, &. B. Kassel, and . Gibaud, Towards an ontology for sharing medical images and regions of interest in neuroimaging, Bioinformatics journal, vol.41, issue.5, pp.766-778, 2008.
URL : https://hal.archives-ouvertes.fr/inserm-00344293

S. Trujillo, D. Batory, and &. O. Diaz, Feature Oriented Model Driven Development: A Case Study for Portlets, 29th International Conference on Software Engineering (ICSE'07), pp.44-53, 2007.
DOI : 10.1109/ICSE.2007.36

G. Von-laszewski, I. Foster, J. Gawor, and &. P. Lane, A Java commodity grid kit, Concurrency and Computation: Practice and Experience, vol.11, issue.8-9, pp.645-662, 2001.
DOI : 10.1002/cpe.572

]. B. Wassermann, W. Emmerich, B. Butchart, N. Cameron, L. Chen et al., Sedna: A BPEL-Based Environment for Visual Scientific Workflow Modeling, Workflows for e-Science [Taylor 07a], chapitre 26, pp.428-449
DOI : 10.1007/978-1-84628-757-2_26

D. Withers, E. Kawas, L. Mccarthy, B. Vandervalk, and &. M. Wilkinson, Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins, Leveraging Applications of Formal Methods, Verification , and Validation(LNCS), pp.301-312, 2010.
DOI : 10.1007/978-3-642-10871-6_27

]. K. Wolstencroft, P. Alper, D. Hull, C. Wroe, P. Lord et al., The myGrid Ontology: Bioinformatics Service Discovery, International Journal of Bioinformatics Research and Applications, 2007.

C. Wroe, C. Goble, A. Goderis, P. Lord, S. Miles et al., Recycling workflows and services through discovery and reuse, Concurrency and Computation: Practice and Experience, vol.1, issue.2, pp.181-194, 2007.
DOI : 10.1002/cpe.1050