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. Dans, Chez CMS-G et TK81-MS nous n'avons que la copie entre 40 et 44 Il pourrait alors s'agir d'une perte de l'autre copie dans ces deux génomes (la duplication existant chez macrocarpa) Nous avons donc replacé la copie manquante dans ces deux génomesgénomesà côté de 18

. Au, Les permutations sont maintenant constituées d'un jeu de 42 marqueurs o` u tous les paralogues ontétéontété résolus. Ces jeux de permutations vont pouvoirêtrepouvoirêtre utilisés dans les outils classiques d'analyse de réarrangements tels que GRIMM et MGR. 6.5. Conclusion ancestrales qu'il retourne. Cependant, grâce aux duplicats obtenus avec notre méthode, nous pouvons toujours retracer cesévénementscesévénements le long d'un arbre phylogénétique. ´ Etant donné que l'arbre GRIMM est basé sur la structure des génomes et que trois des génomes ontétéontété " manuellement " reconstitués

. Ce-génome-n-'´-etant-pas-fini, nous ne pouvons pas armer qu'il s'agisse de pertes au cours de l'´ evolution. Chez TK81-O, il manque les marqueurs {15,16} dans une des copies, perdus au cours de l'´ evolution. Chez A et B {15,16} ontétéontété perdus dans deux copies. Les marqueurs {15, p.29

{. Le-groupe-de-marqueurs, 35} estégalementestégalement retrouvé dupliqué dans tous les génomes sauf CMS-G et TK81-MS. Chez CMS-E il ne reste que {32} dans une des copies Une nouvelle fois, ce marqueur est en bord de contig, nous ne pouvons donc pas dire s'il s'agit d'une perte de {33, 35} ou d'un manque dû au séquençage. Chez macrocarpa et TK81-O, une copie de {35} auraitétéauraitété perdue. Les marqueurs {32

{. Le-groupe-de-marqueurs, 43} estégalementestégalement retrouvé dupliqué dans tous les génomes sauf CMS-G et TK81-MS. On peut noter la perte d'une des copies {42} chez macrocarpa et d'une des copies de {41, 42} chez A, CMS-E et TK81-O. B conserve toutes les copies. Ici aussi le groupe de marqueurs {41

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