D. La-fréquence-moyenne-trèstrèsélevé-obtenue-pour-la-classe-antibiotiquedimise, Les fuscachelines sont des sidérophores synthétisés par les bactéries Thermobifida fusca Nous avons soumis la fuscacheline A ` a notre outil de prédiction et avons obtenu les résultats suivants : antibiotique=0,37, anti-tumoral=0,06, immuno-modulateur=0,02, siderophore=0,40, surfactant=0,03, toxine=0,01. D'après ces résultats, ce peptide est correctement prédit comme un sidérophore. Nous pouvonségalementpouvonségalement remarquer que ce peptide contient des monomères identifiés au sein des antibiotiques, cependant, nous n'avons trouvé aucune information concernant cette activité au sein de la littérature, bien que certains sidérophores, comme par exemple l'asterobactine Les résultats obtenus sont les suivants : antibiotique=0 Ces résultats sont cohérents avec l'activité antibiotique identifiée pour ce peptide, cependant, l'activité anti-tumorale n'est pas prédite, présentent une activité antibiotique. La thiocoraline est un peptide synthétisé par les bactéries du genre Micromonospora et connue pour ses propriétés anti-tumorales et antibiotiques Les mannopeptimycines sont des glycopeptides antibiotiques synthétisés par la bactérie Streptomyces hygroscopicus Les résultats obtenus pour l'un des variants sont, pp.0-0, 1997.

. Dans-ce-chapitre, Ces analyses sont lespremì eresàeres`eresà traiter un nombre aussi important de peptides non-ribosomiaux et de monomères Elles nous ont permis de mettre enévidenceenévidence des différences, de composition monomérique et de taille, entre les peptides synthétisés par les 6.3. Analyse du génome de Pseudomonas entomophila Fig. 6.5 ? Organisation des clusters des g` enes de la pyoverdine chez différentes espèces de Pseudomonas . Les g` enes homologues apparaissent dans la même couleur, nous avons réalisé un ensemble d'analyses statistiques sur les données contenues dans Norine, 2003.

P. Ravel and . Cornelis, Cette figure montre que l'organisation des clusters de la pyoverdine est très différente d'une espècè a l'autre. Le cluster de P. entomophila possède une organisation qui lui est propre et qui confirme l'hypothèse de la production d'une nouvelle pyoverdine par P. entomophila. En effet, seul le cluster de P. entomophila contient 5 g` enes NRPS potentiellement impliqués dans la synthèse de la partie peptidique de la pyoverdine, ce qui suggère la synthèse d'une nouvelle pyoverdine, Cependant, le cluster identifié chez P. entomophila contient un grand nombre de g` enes homologues avec les autres clusters identifiés au sein des autres espèces de Pseudomonas. 6.4. Validations expérimentales, 2003.

. La-colonne-est-conditionnée-par, mL de méthanol pur, rincée par 90 mL d'eau, l'´ echantillon (100 mL) est alors déposé. La colonne est ensuite lavée par 100 mL d'eau et séchéè a l'air. Les pyoverdines sontéluéessontéluées par 100

L. Résultats-montrent-bien-que-les-souches and P. , aeruginosa produisent bien une molécule qui fluoresce en réponsè a une carence en fer, contrairementàcontrairementà la souche B. subtilis 168. Ces résultats confirment l

. Dans-cette-section, nous avons dans un premier temps démontré l'utilité de Norine pour l'analyse des peptides non-ribosomiaux avec l'´ etude d'un cluster NRPS chez Lactococcus lactis produisant probablement un lipopeptide antibiotique et surfactant. Ensuite, nous avonsétudiéavonsétudié les différents clusters NRPS chez Pseudomonas entomophila. Nous avons confirmé la synthèse par voie non-ribosomiale d

. Abdel-mawgoud, Characterization of Surfactin Produced by Bacillus subtilis Isolate BS5, Applied Biochemistry and Biotechnology, vol.204, issue.1, pp.289-303, 2008.
DOI : 10.1007/s12010-008-8153-z

. Altschul, Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

. Ansari, NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases, Nucleic Acids Research, vol.32, issue.Web Server, pp.405-413, 2004.
DOI : 10.1093/nar/gkh359

. Balibar, Generation of D Amino Acid Residues in Assembly of Arthrofactin by Dual Condensation/Epimerization Domains, Chemistry & Biology, vol.12, issue.11, pp.1189-1200, 2005.
DOI : 10.1016/j.chembiol.2005.08.010

M. Besson, F. Besson, and G. Michel, Action of mycosubtilin, an antifungal antibiotic of Bacillus subtilis, on the cell membrane of Saccharomyces cerevisiae, Microbios, vol.59, pp.113-121, 1989.

H. Budzikiewicz, Siderophores of the Pseudomonadaceae sensu stricto (Fluorescent and Non-Fluorescent Pseudomonas spp.), ChemInform, vol.87, issue.31, pp.81-237, 2004.
DOI : 10.1002/chin.200531214

. Bunke, H. Shearer-]-bunke, and K. Shearer, A graph distance metric based on the maximal common subgraph, Pattern Recognition Letters, vol.19, issue.3-4, pp.3-4255, 1998.
DOI : 10.1016/S0167-8655(97)00179-7

. Caboche, Structural pattern matching of nonribosomal peptides, BMC Structural Biology, vol.9, issue.1, p.15, 2009.
DOI : 10.1186/1472-6807-9-15

URL : https://hal.archives-ouvertes.fr/hal-00641486

. Caboche, NORINE: a database of nonribosomal peptides, Nucleic Acids Research, vol.36, issue.Database, pp.326-331, 2008.
DOI : 10.1093/nar/gkm792

URL : https://hal.archives-ouvertes.fr/inria-00281012

G. L. Challis, Mining microbial genomes for new natural products and biosynthetic pathways, Microbiology, vol.154, issue.6, pp.1555-1569, 2008.
DOI : 10.1099/mic.0.2008/018523-0

. Challis, Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains, Chemistry & Biology, vol.7, issue.3, pp.211-224, 2000.
DOI : 10.1016/S1074-5521(00)00091-0

. Chutrakul, The Production and Characterisation of Trichotoxin Peptaibols, by Trichoderma asperellum, Chemistry & Biodiversity, vol.1461, issue.9, pp.1694-1706, 2008.
DOI : 10.1002/cbdv.200890158

. Conti, Structural basis for the activation of phenylalanine in the non-ribosomal biosynthesis of gramicidin S, The EMBO Journal, vol.16, issue.14, 1997.
DOI : 10.1093/emboj/16.14.4174

. De-bruijn, species, Molecular Microbiology, vol.96, issue.2, pp.417-428, 2007.
DOI : 10.1111/j.1365-2958.2006.05525.x

T. Deng, S. Deng, and J. Taunton, ChemInform Abstract: Kinetic Control of Proline Amide Rotamers: Total Synthesis of trans,trans- and cis,cis-Ceratospongamide., ChemInform, vol.124, issue.28, pp.916-917, 2002.
DOI : 10.1002/chin.200228247

. Dimise, Structure elucidation and biosynthesis of fuscachelins, peptide siderophores from the moderate thermophile Thermobifida fusca, Proceedings of the National Academy of Sciences, vol.105, issue.40, pp.15311-15316, 2008.
DOI : 10.1073/pnas.0805451105

. Doekel, Non-ribosomal peptide synthetase module fusions to produce derivatives of daptomycin in Streptomyces roseosporus, Microbiology, vol.154, issue.9, pp.2872-2880, 2008.
DOI : 10.1099/mic.0.2008/020685-0

H. Duclohier, Peptaibiotics and Peptaibols: An Alternative to Classical Antibiotics?, Chemistry & Biodiversity, vol.19, issue.6, pp.1023-1026, 2007.
DOI : 10.1002/cbdv.200790094

. Duerfahrt, Rational Design of a Bimodular Model System for the Investigation of Heterocyclization in Nonribosomal Peptide Biosynthesis, Chemistry & Biology, vol.11, issue.2, pp.261-271, 2004.
DOI : 10.1016/j.chembiol.2004.01.013

P. Eades, A heuristic for graph drawing, Congressus Numerantium, vol.42, pp.149-160, 1984.

S. R. Eddy, Profile hidden Markov models, Bioinformatics, vol.14, issue.9, pp.755-763, 1998.
DOI : 10.1093/bioinformatics/14.9.755

G. Erlanger, B. F. Erlanger, and L. Goode, Mode of Action of Penicillin, Nature, vol.195, issue.5072, pp.183-184, 1967.
DOI : 10.1021/ja01151a512

. Feil, Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000, Proc. Natl. Acad. Sci. U.S.A, pp.11064-11069, 2005.
DOI : 10.1073/pnas.0504930102

. Felnagle, Nonribosomal Peptide Synthetases Involved in the Production of Medically Relevant Natural Products, Molecular Pharmaceutics, vol.5, issue.2, pp.191-211, 2008.
DOI : 10.1021/mp700137g

. Frank, Data mining in bioinformatics using Weka, Bioinformatics, vol.20, issue.15, pp.2479-2481, 2004.
DOI : 10.1093/bioinformatics/bth261

R. Fruchterman, T. M. Fruchterman, and E. M. Reingold, Graph drawing by force-directed placement, Software: Practice and Experience, vol.41, issue.11, pp.1129-1164, 1991.
DOI : 10.1002/spe.4380211102

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.13.8444

J. Garey, M. R. Garey, D. S. Johnson, &. Freeman, U. Co et al., Computers and Intractability : A Guide to the Theory of NP-Completeness New insights into the first oxidative phenol coupling reaction during vancomycin biosynthesis, Bioorg. Med. Chem. Lett, vol.18, pp.3081-3084, 1979.

. Grangemard, Lichenysin: A More Efficient Cation Chelator Than Surfactin, Applied Biochemistry and Biotechnology, vol.90, issue.3, pp.199-210, 2001.
DOI : 10.1385/ABAB:90:3:199

C. J. Green, Immunosuppression with cyclosporin A : a review, Diagn Histopathol, vol.4, pp.157-174, 1981.

. Grünewald, J. Grünewald, and M. A. Marahiel, Chemoenzymatic and Template-Directed Synthesis of Bioactive Macrocyclic Peptides, ChemInform, vol.70, issue.25, pp.121-146, 2006.
DOI : 10.1002/chin.200725229

. Guenzi, Characterization of the Syringomycin Synthetase Gene Cluster. A LINK BETWEEN PROKARYOTIC AND EUKARYOTIC PEPTIDE SYNTHETASES, Journal of Biological Chemistry, vol.273, issue.49, pp.32857-32863, 1998.
DOI : 10.1074/jbc.273.49.32857

. Haese, Molecular characterization of the enniatin synthetase gene encoding a multifunctional enzyme catalysing N-methyldepsipeptide formation in Fusarium scirpi, Molecular Microbiology, vol.16, issue.6, pp.905-914, 1993.
DOI : 10.1021/bi00351a005

. Harada, Isolation of Adda from microcystin-LR by microbial degradation, Toxicon, vol.44, issue.1, pp.107-109, 2004.
DOI : 10.1016/j.toxicon.2004.04.003

. Hofemeister, Genetic analysis of the biosynthesis of non-ribosomal peptide- and polyketide-like antibiotics, iron uptake and biofilm formation by Bacillus subtilis A1/3, Molecular Genetics and Genomics, vol.40, issue.4, pp.363-378, 2004.
DOI : 10.1007/s00438-004-1056-y

. Joardar, Whole-genome sequence analysis of Pseudomonas syringae pv, phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition, 2005.

. Kim, Responses of Arabidopsis thaliana to challenge by Pseudomonas syringae, Mol. Cells, vol.25, pp.323-331, 2008.

. Koba, . Konopa, M. Koba, and J. Konopa, [Actinomycin D and its mechanisms of action], Postepy Hig Med Dosw (Online), vol.59, pp.290-298, 2005.

. Kohli, . Walsh, R. M. Kohli, and C. T. Walsh, Enzymology of acyl chain macrocyclization in natural product biosynthesis, Chem. Commun. (Camb, pp.297-307, 2003.

. Kohli, Biomimetic synthesis and optimization of cyclic peptide antibiotics, Nature, vol.32, issue.6898, pp.658-661, 2002.
DOI : 10.1126/science.7604280

. Konz, Molecular and biochemical characterization of the protein template controlling biosynthesis of the lipopeptide lichenysin, 1999.

. Konz, The bacitracin biosynthesis operon of Bacillus licheniformis ATCC 10716: molecular characterization of three multi-modular peptide synthetases, Chemistry & Biology, vol.4, issue.12, pp.927-937, 1997.
DOI : 10.1016/S1074-5521(97)90301-X

. Kurmayer, Diversity of Microcystin Genes within a Population of the Toxic Cyanobacterium Microcystis spp. in Lake Wannsee (Berlin, Germany), Microbial Ecology, vol.43, issue.1, pp.107-118, 2002.
DOI : 10.1007/s00248-001-0039-3

. Lam, Toxicology and Evaluation of Microcystins, Therapeutic Drug Monitoring, vol.22, issue.1, pp.69-72, 2000.
DOI : 10.1097/00007691-200002000-00015

Z. Lawen, A. Lawen, and R. Zocher, Cyclosporin synthetase. The most complex peptide synthesizing multienzyme polypeptide so far described, J. Biol. Chem, vol.265, pp.11355-11360, 1990.

. Lecì-ere, Development of a biological test to evaluate the bioavailability of iron in culture media, J. Appl. Microbiol, 2009.

. Lecì-ere, Mycosubtilin overproduction by Bacillus subtilis BBG100 enhances the organism's antagonistic and biocontrol activities, Appl. Environ. Microbiol, vol.71, pp.4577-4584, 2005.

. Lee, Microbial symbiosis in marine sponges, J. Microbiol, vol.39, pp.254-264, 2001.

D. P. Levine, Vancomycin: Understanding Its Past and Preserving Its Future, Southern Medical Journal, vol.101, issue.3, pp.284-291, 2008.
DOI : 10.1097/SMJ.0b013e3181647037

. Li, Myxochelin Biosynthesis: Direct Evidence for Two- and Four-Electron Reduction of a Carrier Protein-Bound Thioester, Journal of the American Chemical Society, vol.130, issue.24, pp.7554-7555, 2008.
DOI : 10.1021/ja8025278

. Lin, Functional and transcriptional analyses of a fengycin synthetase gene, fenC, from Bacillus subtilis, J. Bacteriol, vol.181, pp.5060-5067, 1999.

B. Livingstone, C. D. Livingstone, and G. J. Barton, Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation, Bioinformatics, vol.9, issue.6, pp.745-756, 1993.
DOI : 10.1093/bioinformatics/9.6.745

. Magarvey, Biosynthetic Pathway for Mannopeptimycins, Lipoglycopeptide Antibiotics Active against Drug-Resistant Gram-Positive Pathogens, Antimicrobial Agents and Chemotherapy, vol.50, issue.6, pp.2167-2177, 2006.
DOI : 10.1128/AAC.01545-05

. Marahiel, Modular Peptide Synthetases Involved in Nonribosomal Peptide Synthesis, Chemical Reviews, vol.97, issue.7, pp.2651-2674, 1997.
DOI : 10.1021/cr960029e

. Matthijs, Siderophore-mediated iron acquisition in the entomopathogenic bacterium Pseudomonas entomophila L48 and its close relative Pseudomonas putida KT2440, BioMetals, vol.42, issue.6, 2009.
DOI : 10.1007/s10534-009-9247-y

URL : https://hal.archives-ouvertes.fr/hal-00441903

K. Mehlhorn, Graph algorithms and NP-completeness, 1984.

J. M. Meyer, Pyoverdines: pigments, siderophores and potential taxonomic markers of fluorescent Pseudomonas species, Archives of Microbiology, vol.174, issue.3, pp.135-142, 2000.
DOI : 10.1007/s002030000188

. Minowa, Comprehensive Analysis of Distinctive Polyketide and Nonribosomal Peptide Structural Motifs Encoded in Microbial Genomes, Journal of Molecular Biology, vol.368, issue.5, pp.1500-1517, 2007.
DOI : 10.1016/j.jmb.2007.02.099

. Molnár, The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90, Chemistry & Biology, vol.7, issue.2, pp.97-109, 2000.
DOI : 10.1016/S1074-5521(00)00075-2

. Moon, Genomic, genetic and structural analysis of pyoverdine-mediated iron acquisition in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25, BMC Microbiology, vol.8, issue.1, p.7, 2008.
DOI : 10.1186/1471-2180-8-7

. Mootz, Decreasing the Ring Size of a Cyclic Nonribosomal Peptide Antibiotic by In-Frame Module Deletion in the Biosynthetic Genes, Journal of the American Chemical Society, vol.124, issue.37, pp.10980-10981, 2002.
DOI : 10.1021/ja027276m

. Mootz, Construction of hybrid peptide synthetases by module and domain fusions, Proceedings of the National Academy of Sciences, vol.97, issue.11, pp.5848-5853, 2000.
DOI : 10.1073/pnas.100075897

. Mootz, Ways of Assembling Complex Natural Products on Modular Nonribosomal Peptide Synthetases A list of abbreviations can be found at the end of the text., ChemBioChem, vol.3, issue.6, pp.490-504, 2002.
DOI : 10.1002/1439-7633(20020603)3:6<490::AID-CBIC490>3.0.CO;2-N

. Morrison, . Wenzel, A. J. Morrison, and R. P. Wenzel, Epidemiology of Infections Due to Pseudomonas aeruginosa, Clinical Infectious Diseases, vol.6, issue.Supplement 3, pp.627-642, 1984.
DOI : 10.1093/clinids/6.Supplement_3.S627

. Mossialos, Identification of new, conserved, non-ribosomal peptide synthetases from fluorescent pseudomonads involved in the biosynthesis of the siderophore pyoverdine, Molecular Microbiology, vol.183, issue.6, pp.1673-1685, 2002.
DOI : 10.1046/j.1365-2958.2002.03120.x

. Moyne, Molecular characterization and analysis of the operon encoding the antifungal lipopeptide bacillomycin D, FEMS Microbiology Letters, vol.234, issue.1, pp.43-49, 2004.
DOI : 10.1111/j.1574-6968.2004.tb09511.x

. Nemoto, Asterobactin, a New Siderophore Group Antibiotic from Nocardia asteroides., The Journal of Antibiotics, vol.55, issue.6, pp.593-597, 2002.
DOI : 10.7164/antibiotics.55.593

. Pelludat, The yersiniabactin biosynthetic gene cluster of Yersinia enterocolitica : organization and siderophore-dependent regulation, J. Bacteriol, vol.180, pp.538-546, 1998.

. Peypoux, Recent trends in the biochemistry of surfactin, Applied Microbiology and Biotechnology, vol.51, issue.5, pp.553-563, 1999.
DOI : 10.1007/s002530051432

. Pfennig, Molecular Characterization of the Genes of Actinomycin Synthetase I and of a 4-Methyl-3-hydroxyanthranilic Acid Carrier Protein Involved in the Assembly of the Acylpeptide Chain of Actinomycin in Streptomyces, Journal of Biological Chemistry, vol.274, issue.18, pp.12508-12516, 1999.
DOI : 10.1074/jbc.274.18.12508

J. Piel, Metabolites from symbiotic bacteria, Nat. Prod. Rep., vol.103, issue.3, pp.338-362, 2009.
DOI : 10.1039/B703499G

URL : http://hdl.handle.net/11858/00-001M-0000-0012-A26C-3

. Raaijmakers, spp.: Diversity, Activity, Biosynthesis, and Regulation, Molecular Plant-Microbe Interactions, vol.19, issue.7, pp.699-710, 2006.
DOI : 10.1094/MPMI-19-0699

. Rausch, Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs), Nucleic Acids Research, vol.33, issue.18, pp.5799-5808, 2005.
DOI : 10.1093/nar/gki885

J. Ravel and P. Cornelis, Genomics of pyoverdine-mediated iron uptake in pseudomonads, Trends in Microbiology, vol.11, issue.5, pp.195-200, 2003.
DOI : 10.1016/S0966-842X(03)00076-3

R. , W. Raymond, J. W. Willett, and P. , Maximum common subgraph isomorphism algorithms for the matching of chemical structures, J. Comput. Aided Mol. Des, vol.16, issue.7, pp.521-533, 2002.

. Raymond, Enterobactin: An archetype for microbial iron transport, Proceedings of the National Academy of Sciences, vol.100, issue.7, pp.3584-3588, 2003.
DOI : 10.1073/pnas.0630018100

. Reverchon, Characterization of Indigoidine Biosynthetic Genes in Erwinia chrysanthemi and Role of This Blue Pigment in Pathogenicity, Journal of Bacteriology, vol.184, issue.3, pp.654-665, 2002.
DOI : 10.1128/JB.184.3.654-665.2002

. Romero, Thiocoraline, a New Depsipeptide with Antitumor Activity Produced by a Marine Micromonospora. I. Taxonomy, Fermentation, Isolation, and Biological Activities., The Journal of Antibiotics, vol.50, issue.9, pp.734-737, 1997.
DOI : 10.7164/antibiotics.50.734

. Roongsawang, Cloning and Characterization of the Gene Cluster Encoding Arthrofactin Synthetase from Pseudomonas sp. MIS38, Chemistry & Biology, vol.10, issue.9, pp.869-880, 2003.
DOI : 10.1016/j.chembiol.2003.09.004

. Rouhiainen, Genes encoding synthetases of cyclic depsipeptides, anabaenopeptilides, in Anabaena strain 90, Anabaena strain 90, pp.156-167, 2000.
DOI : 10.1074/jbc.271.20.12017

. Schellenberg, Identification of genes involved in the biosynthesis of the cytotoxic compound glidobactin from a soil bacterium, Environmental Microbiology, vol.38, issue.7, pp.1640-1650, 2007.
DOI : 10.1111/j.1462-2920.2007.01278.x

. Schenker, Comparison of Distance Measures for Graph-Based Clustering of Documents, Proceedings of the Graph Based Representations in Pattern Recognition, 4th IAPR International Workshop, pp.202-213, 2003.
DOI : 10.1007/3-540-45028-9_18

. Schwarzer, Nonribosomal peptides: from genes to products, Natural Product Reports, vol.20, issue.3, pp.275-287, 2003.
DOI : 10.1039/b111145k

D. Schwarzer and M. A. Marahiel, Multimodular biocatalysts for natural product assembly, Naturwissenschaften, vol.88, issue.3, pp.93-101, 2001.
DOI : 10.1007/s001140100211

. Shen, The biosynthetic gene cluster for the anticancer drug bleomycin from Streptomyces verticillus ATCC15003 as a model for hybrid peptide-polyketide natural product biosynthesis, Journal of Industrial Microbiology and Biotechnology, vol.27, issue.6, 2001.
DOI : 10.1038/sj.jim.7000194

S. A. Sieber and M. A. Marahiel, Learning from Nature's Drug Factories: Nonribosomal Synthesis of Macrocyclic Peptides, Journal of Bacteriology, vol.185, issue.24, pp.7036-7043, 2003.
DOI : 10.1128/JB.185.24.7036-7043.2003

. Sieber, S. A. Sieber, and M. A. Marahiel, Molecular Mechanisms Underlying Nonribosomal Peptide Synthesis:?? Approaches to New Antibiotics, Chemical Reviews, vol.105, issue.2, pp.715-738, 2005.
DOI : 10.1021/cr0301191

. Siezen, Genome-Scale Genotype-Phenotype Matching of Two Lactococcus lactis Isolates from Plants Identifies Mechanisms of Adaptation to the Plant Niche, Applied and Environmental Microbiology, vol.74, issue.2, 2008.
DOI : 10.1128/AEM.01850-07

. Smith, The multifunctional peptide synthetase performing the first step of penicillin biosynthesis in Penicillium chrysogenum is a 421,073 dalton protein similar to Bacillus brevis peptide antibiotic synthetases, EMBO J, vol.9, pp.2743-2750, 1990.

. Stachelhaus, The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases, Chemistry & Biology, vol.6, issue.8, pp.493-505, 1999.
DOI : 10.1016/S1074-5521(99)80082-9

. Stachelhaus, Rational design of peptide antibiotics by targeted replacement of bacterial and fungal domains, Science, vol.269, issue.5220, pp.69-72, 1995.
DOI : 10.1126/science.7604280

. Starcevic, ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures, Nucleic Acids Research, vol.36, issue.21, pp.6882-6892, 2008.
DOI : 10.1093/nar/gkn685

. Tabata, ywfE in Bacillus subtilis Codes for a Novel Enzyme, L-Amino Acid Ligase, Journal of Bacteriology, vol.187, issue.15, pp.5195-5202, 2005.
DOI : 10.1128/JB.187.15.5195-5202.2005

. Tan, ChemInform Abstract: cis,cis- and trans,trans-Ceratospongamide, New Bioactive Cyclic Heptapeptides from the Indonesian Red Alga Ceratodictyon spongiosum and Symbiotic Sponge Sigmadocia symbiotica., ChemInform, vol.65, issue.18, pp.419-425, 2000.
DOI : 10.1002/chin.200018132

. Thompson, Multiple Sequence Alignment Using ClustalW and ClustalX, Curr Protoc Bioinformatics, vol.266, issue.2 23, 2002.
DOI : 10.1002/0471250953.bi0203s00

. Tobiasen, Nonribosomal peptide synthetase (NPS) genes in Fusarium graminearum, F. culmorum and F. pseudograminearium and identification of NPS2 as the producer of ferricrocin, Current Genetics, vol.183, issue.2, pp.43-58, 2007.
DOI : 10.1007/s00294-006-0103-0

. Trauger, Peptide cyclization catalysed by the thioesterase domain of tyrocidine synthetase, Nature, vol.407, pp.215-218, 2000.

. Vizcaíno, Detection of peptaibols and partial cloning of a putative peptaibol synthetase gene fromT. harzianum CECT 2413, Folia Microbiologica, vol.67, issue.2, pp.114-120, 2006.
DOI : 10.1007/BF02932165

. Vodovar, Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila, Nature Biotechnology, vol.172, issue.6, pp.673-679, 2006.
DOI : 10.1038/nbt1212

URL : https://hal.archives-ouvertes.fr/hal-00133119

. Vodovar, Drosophila host defense after oral infection by an entomopathogenic Pseudomonas species, Proceedings of the National Academy of Sciences, vol.102, issue.32, pp.11414-11419, 2005.
DOI : 10.1073/pnas.0502240102

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1183552

. Voet, Principles of Biochemistry : Life at the Molecular Level, chapter 4, 2007.

. Voet, Principles of Biochemistry : Life at the Molecular Level, chapter 5, 2007.

. Voet, Principles of Biochemistry : Life at the Molecular Level, chapter 6, 2007.

. Voet, Principles of Biochemistry : Life at the Molecular Level, chapter 3, 2007.

. Voet, Principles of Biochemistry : Life at the Molecular Level, chapter 26, 2007.

. Voet, Principles of Biochemistry : Life at the Molecular Level, chapter 27, 2007.

. Von-döhren, Multifunctional Peptide Synthetases, Chemical Reviews, vol.97, issue.7, pp.2675-2706, 1997.
DOI : 10.1021/cr9600262

. Wade, All-D amino acid-containing channel-forming antibiotic peptides., Proceedings of the National Academy of Sciences, vol.87, issue.12, pp.4761-4765, 1990.
DOI : 10.1073/pnas.87.12.4761

URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC54197/pdf

J. D. Walton, HC-toxin, Phytochemistry, vol.67, issue.14, pp.1406-1413, 2006.
DOI : 10.1016/j.phytochem.2006.05.033

. Weber, The peptide synthetase catalyzing cyclosporine production in Tolypocladium niveum is encoded by a giant 45.8-kilobase open reading frame, Current Genetics, vol.25, issue.2, pp.120-125, 1994.
DOI : 10.1007/BF00313798

. Weber, CLUSEAN: A computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters, Journal of Biotechnology, vol.140, issue.1-2, pp.13-17, 2009.
DOI : 10.1016/j.jbiotec.2009.01.007

. Weis, Daptomycin, a lipopeptide antibiotic in clinical practice, Curr Opin Investig Drugs, vol.9, pp.879-884, 2008.

W. Whitmore, L. Whitmore, and B. A. Wallace, Analysis of peptaibol sequence composition: implications for in vivo synthesis and channel formation, European Biophysics Journal, vol.33, issue.3, pp.233-237, 2004.
DOI : 10.1007/s00249-003-0348-1

W. Whitmore, L. Whitmore, and B. A. Wallace, The Peptaibol Database: a database for sequences and structures of naturally occurring peptaibols, Nucleic Acids Research, vol.32, issue.90001, pp.593-594, 2004.
DOI : 10.1093/nar/gkh077

. Wiest, Identification of Peptaibols from Trichoderma virens and Cloning of a Peptaibol Synthetase, Journal of Biological Chemistry, vol.277, issue.23, pp.20862-20868, 2002.
DOI : 10.1074/jbc.M201654200

URL : https://hal.archives-ouvertes.fr/hal-00013231

. Yakimov, Structural characterization of lichenysin A components by fast atom bombardment tandem mass spectrometry, Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids, vol.1438, issue.2, pp.273-80, 1999.
DOI : 10.1016/S1388-1981(99)00058-X

. Yakimov, A putative lichenysin A synthetase operon in Bacillus licheniformis: initial characterization, Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, vol.1399, issue.2-3, pp.141-153, 1998.
DOI : 10.1016/S0167-4781(98)00096-7

. Yakimov, Characterization of a new lipopeptide surfactant produced by thermotolerant and halotolerant subsurface Bacillus licheniformis BAS50, Appl. Environ. Microbiol, vol.61, pp.1706-1713, 1995.

. Zhang, The Screening of Antimicrobial Bacteria with Diverse Novel Nonribosomal Peptide Synthetase (NRPS) Genes from South China Sea Sponges, Marine Biotechnology, vol.47, issue.3, pp.346-355, 2009.
DOI : 10.1007/s10126-008-9148-z