W. Comparaison-des-performances-de and D. De, 87 3.3.4.1. Comparaison pour l'application, p.88

L. La-méthode-de-parcours, 113 5.3.2.2. Résultats obtenus pour la méthode de parcours, p.119

D. Trung-tung, B. Aurélien, A. Lucia, D. Vincent, B. Thanh-hoa et al., Grid-based International Network for Flu Observation (g-INFO)

D. Trung-tung, N. Hong-quang, A. Lucia, D. Yannick, L. Aurélien et al., A new flexible workflow on the Grid for monitoring H5N1, Proceedings of the International Symposium on Grids and Clouds, in conjunction with Open Grid Forum 31, 2011.

D. Trung-tung, D. Quang-minh, V. Trong-hieu, P. Hong-phong, B. Vincent et al., g-INFO portal: a solution to monitor Influenza A on the Grid for non-grid users, Proceedings of HealthGrid conference 2011 conjunction with IEEE CBMS2011 Studies in Health Technology and Informatics

L. Q. Breton, H. M. Pham, H. Q. Le, E. Nguyen, and . Medernach, On the Performance Enhancement of WISDOM Production Environment, Proceedings of International Symposium on Grids and Clouds, PoS(ISGC 2012)001

T. Tung, D. Najwa, T. , H. Quang, N. Jean-christophe et al., Portage de ePANAM sur la grille de calcul Rencontres Scientifiques France Grilles, 2011.

T. Tung, D. , T. Hieu, V. , D. Hung et al., Le portail g-INFO pour surveiller la grippe Influenza A Rencontres Scientifiques France Grilles

D. Trung-tung, Towards a global surveillance network on avian influenza using grid technology. Doctoral presentation at IEEE-RIVF, 2009.

T. Doan, A. Lucia, D. Costa, B. Aurélien, L. Thanh-hoa et al., Grid-based International Network for Flu Observation. Oral presentation at EGEE User Forum, pp.12-16, 2010.
URL : https://hal.archives-ouvertes.fr/in2p3-00573758

D. Trung-tung, D. Quang-minh, A. Lucia, D. Trong-hieu, V. Thanh-hoa et al., g-INFO portal for monitoring Influenza A on the Grid. Demonstration at EGI User Forum, pp.11-14, 2011.

. I. Foster, What is the Grid? A Three Point Checklist, 2002.

T. J. Kaufman, J. Lehman, and . Thomas, Grid computing made simple " , The Industrial Physicist, pp.32-33, 2003.

R. Gupta and . Bio-informatics, Bonding genes with IT, INDIACOM 2010, 2010.

F. Mulmo, F. Pacini, J. Prelz, M. White, P. Barroso et al., Programming the Grid with gLite, Computational Methods in Science and Technology, vol.12, issue.1, pp.33-45, 2006.

M. Romberg, The UNICORE Grid Infrastructure, Scientific Programming, vol.10, issue.2, pp.149-157, 2002.
DOI : 10.1155/2002/483253

. I. Foster, Globus Toolkit Version 4: Software for Service-Oriented Systems, IFIP International Conference on Network and Parallel Computing, pp.2-13, 2006.

M. Ellert, Advanced Resource Connector middleware for lightweight computational Grids, Future Generation Computer Systems, vol.23, issue.2, pp.219-240, 2007.
DOI : 10.1016/j.future.2006.05.008

R. Bolze, Analyse et déploiement de solutions algorithmes et logicielles pour des applications bioinformatiques à grande échelle sur la grille, Thèse de l'Ecole Normale Supérieuse de Lyon, 2008.

J. Venkat, Grid computing in the enterprise with the UD MetaProcessor, Proceedings. Second International Conference on Peer-to-Peer Computing,, p.4, 2002.
DOI : 10.1109/PTP.2002.1046289

T. F. Hupfeld, B. Cortes, E. Kolbeck, M. Focht, J. Hess et al., XtreemFS -a case for object-based file systems in Grids, Concurrency and Computation: Practice and Experience

J. D. Thompson, D. G. Higgins, and T. J. Gibson, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994.
DOI : 10.1093/nar/22.22.4673

D. Lipman and W. Pearson, Rapid and sensitive protein similarity searches, Science, vol.227, issue.4693, pp.1435-1476, 1985.
DOI : 10.1126/science.2983426

S. Eddy, Profile hidden Markov models, Bioinformatics, vol.14, issue.9, pp.755-63, 1998.
DOI : 10.1093/bioinformatics/14.9.755

S. Guindon, J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk et al., New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0, Systematic Biology, vol.59, issue.3, pp.307-328, 2010.
DOI : 10.1093/sysbio/syq010

URL : https://hal.archives-ouvertes.fr/lirmm-00511784

T. Martin, F. Maurier, A. Groppi, A. Barre, D. Naquin et al., Rencontres Scientifiques France Grilles, Utilisation d'une Grille de Calcul (GRISBI) pour le Traitement de Données NGS (Next Generation Sequencing), 2011.

P. Bala, J. Pytlinski, M. Nazaruk, V. Alessandrini, D. Girou et al., BioGRID - An European grid for molecular biology, Proceedings 11th IEEE International Symposium on High Performance Distributed Computing, p.412, 2002.
DOI : 10.1109/HPDC.2002.1029942

J. Merz, A. Onufriev, C. Simmerling, B. Wang, and R. Woods, The Amber biomolecular simulation programs, J. Computat. Chem, vol.26, pp.1668-1688, 2005.

M. Swaminathan and . Karplus, A program for macromolecular energy, minimization, and dynamics calculations, J. Comp. Chem, vol.4, pp.187-217, 1983.

B. Gapped and P. , a new generation of protein database search programs, Nucleic Acids Res, vol.25, pp.3389-3402

E. N. Houstis and J. R. Rice, Computer as thinker/doer: Problem solving environments for computational science, IEEE Computational Science & Engineering, vol.1, issue.2, pp.11-23, 1994.

G. Grillo, F. Licciulli, S. Liuni, E. Sbisà, and G. Pesole, PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences, Nucleic Acids Research, vol.31, issue.13, pp.3608-3612, 2003.
DOI : 10.1093/nar/gkg548

A. Gisel, M. Panetta, G. Grillo, V. Licciulli, S. Liuni et al., DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions, Bioinformatics, vol.20, issue.18, pp.3676-3685, 2004.
DOI : 10.1093/bioinformatics/bth420

M. Vassura, L. Margara, D. Lena, P. Medri, F. Fariselli et al., Reconstruction of 3D Structures From Protein Contact Maps, Computational Biology and Bioinformatics, vol.5, issue.3, pp.357-367, 2008.

C. Blanchet, V. Lefort, C. Combet, and G. Deléage, GPS@ bioinformatics portal: from network to EGEE grid, Stud Health Technol Inform, pp.187-93

C. Combet, C. Blanchet, C. Geourjon, and G. Deléage, NPS@: Network Protein Sequence Analysis, Trends in Biochemical Sciences, vol.25, issue.3, pp.147-50, 2000.
DOI : 10.1016/S0968-0004(99)01540-6

URL : https://hal.archives-ouvertes.fr/hal-00313012

M. T. Smith and . Waterman, Identification of common molecular subsequences, Journal of Molecular Biology, vol.147, issue.1, pp.195-197, 1981.
DOI : 10.1016/0022-2836(81)90087-5

A. Bairoch and R. Apweiler, The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000, Nucleic Acids Research, vol.28, issue.1, pp.45-48, 2000.
DOI : 10.1093/nar/28.1.45

C. Sigrist, L. Cerutti, E. De-castro, P. Langendijk-genevaux, V. Bulliard et al., PROSITE, a protein domain database for functional characterization and annotation, Nucleic Acids Research, vol.38, issue.Database, pp.161-166, 2010.
DOI : 10.1093/nar/gkp885

D. Hull, K. Wolstencroft, R. Stevens, C. Goble, M. Pocock et al., Taverna: a tool for building and running workflows of services, Nucleic Acids Research, vol.34, issue.Web Server, pp.729-732, 2006.
DOI : 10.1093/nar/gkl320

J. Alameda, The Open Grid Computing Environments collaboration: portlets and services for science gateways, Concurrency and Computation: Practice and Experience, vol.50, issue.6, pp.921-942, 2006.
DOI : 10.1002/cpe.1078

J. P. Knoop, T. Hardin, D. Killen, and . Middleton, The CompreHensive collaborativE Framework (CHEF), AGU Fall Meeting Abstracts, 2002.

. I. Foster, A Security Architecture for Computa-tional Grids

A. Conf, Computers and Security, pp.83-91, 1998.

K. Czajkowski and G. Globus, Globus Toolkit Developer's Forum. Globus Alliance, 2006.

I. J. Taylor, From P2P to Web Services and Grids -Peers in a Client/Server World, 2005.

J. Novotny, S. Tuecke, and V. Welch, An online credential repository for the Grid: MyProxy, Proceedings 10th IEEE International Symposium on High Performance Distributed Computing, 2001.
DOI : 10.1109/HPDC.2001.945181

W. Ueng, Introduction for Grid Application Platform Online : http://www.euasiagrid.org/training/EAGSS28_GAP_introduction.pdf [41]. Hsin-Yen Chen, GVSS : A new virtual screening service against the epidemic disease in Asia, ISGC Conference, 2010.

. E. Caron, Contribution to the management of large scale platforms: the Diet experience, 2010.
URL : https://hal.archives-ouvertes.fr/tel-00629060

D. The and . Team, Diet : Distributed interactive engineering toolbox

K. Seymour, C. Lee, F. Desprez, H. Nakada, and Y. Tanaka, The enduser and middleware apis for gridrpc, Workshop on Grid Application Programming Interfaces, In conjunction with GGF12, 2004.

E. Caron, A. Chis, F. Desprez, and A. Su, Design of plug-in schedulers for a GridRPC environment, Future Generation Computer Systems, vol.24, issue.1, pp.46-57, 2008.
DOI : 10.1016/j.future.2007.02.005

URL : https://hal.archives-ouvertes.fr/hal-01428216

A. Tsaregorodtsev, V. Garonne, and I. Stokes-rees, DIRAC: A Scalable Lightweight Architecture for High Throughput Computing, Fifth IEEE/ACM International Workshop on Grid Computing, 2004.
DOI : 10.1109/GRID.2004.22

URL : https://hal.archives-ouvertes.fr/in2p3-00737612

L. Q. Breton, H. M. Pham, H. Q. Le, E. Nguyen, and . Medernach, On the Performance Enhancement of WISDOM Production Environment, Proceedings of International Symposium on Grids and Clouds, PoS OpenMolGRID: Using Automated Workflows in GRID Computing Environment, Proceedings of European Grid Conference, pp.464-473, 2005.

K. Harrison, C. L. Tan, D. Liko, A. Maier, J. Mo?cicki et al., Ganga: a Grid user interface for distributed analysis, Proc. Fifth UK e-Science All-Hands Meeting, pp.18-21, 2006.

S. Reynaud, Uniform Access to Heterogeneous Grid Infrastructures with JSAGA, Production Grids in Asia, Volume . ISBN 978-1- 4419-0102-6, pp.185-196, 2010.

. Krzhizhanovskaya, Dynamic workload balancing of parallel applications with user-level scheduling on the Grid, Future Generation Computer Systems, vol.25, issue.1, pp.28-34, 2009.

J. T. Moscicki, M. G. Pia, A. Mantero, and S. Guatelli, Distributed Geant4 Simulation in Medical and Space Science Applications using DIANE framework and the GRID, Innovative Particle and Radiation Detec-tors, Proc. Suppl, p.123, 2003.

J. B. Simon, Athena: A New Code for Astrophysical MHD, The Astrophysical Journal Supplement Series, vol.178, issue.1, pp.137-177, 2008.

G. M. Morris, R. Huey, W. Lindstrom, M. F. Sanner, R. K. Belew et al., AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility, Journal of Computational Chemistry, vol.22, issue.16, pp.2785-91, 2009.
DOI : 10.1002/jcc.21256

. S. Agostinelli, Geant4???a simulation toolkit, Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, vol.506, issue.3
DOI : 10.1016/S0168-9002(03)01368-8

URL : https://hal.archives-ouvertes.fr/in2p3-00020246

V. Breton, K. Dean, and T. Solomonides, The Healthgrid White Paper, Proceedings of Healthgrid conference, 2005.
URL : https://hal.archives-ouvertes.fr/in2p3-00024024

R. O. Sinnott and A. J. Stell, Towards a Virtual Research Environment for International Adrenal Cancer Research, Proceedings of The International Conference on Computational Science (ICCS), p.4, 2011.
DOI : 10.1016/j.procs.2011.04.118

J. Gonzales, S. Pomel, V. Breton, B. Clot, J. L. Gutknecht et al., Empowering humanitarian medical development using grid technology, Methods of Information in Medicine, vol.44, pp.186-189, 2005.
URL : https://hal.archives-ouvertes.fr/in2p3-00020452

. Segrelles, I. ;. Blanquer, and J. ;. Salavert, Exchanging Data for Breast Cancer Diagnosis on Heterogeneous Grid Platforms, Computing and Informatics, issue.1, pp.31-34, 2012.

. Wei, . Arshad, . Junaid, and R. ;. Sinnott, A Review of Grid Authentication and Authorization Technologies and Support for Federated Access Control Jie, ACM COMPUTING SURVEYS

M. Mirza, Global Public Health Grid -WHO-CDC Public Health Informatics Initiative: Value Proposition and Pilot Projects , proceedings of PHIN2009 conference, 2012.

T. Martin, Utilisation d'une Grille de Calcul (GRISBI) pour le Traitement de Données NGS (New Generation Sequencing, Proceedings of Rencontres Scientifiques France Grilles

N. Maltsev, E. Glass, D. Sulakhe, A. Rodriguez, M. Syed et al., PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways, Nucleic Acids Research, vol.34, issue.90001, pp.369-72, 2006.
DOI : 10.1093/nar/gkj095

M. Kanehisa, S. Goto, M. Hattori, K. F. Aoki-kinoshita, M. Itoh et al., From genomics to chemical genomics: new developments in KEGG, Nucleic Acids Research, vol.34, issue.90001, pp.354-357, 2006.
DOI : 10.1093/nar/gkj102

R. Caspi, H. Foerster, C. Fulcher, R. Hopkinson, J. Ingraham et al., MetaCyc: a multiorganism database of metabolic pathways and enzymes, Nucleic Acids Research, vol.34, issue.90001, pp.511-516, 2006.
DOI : 10.1093/nar/gkj128

R. Overbeek, N. Larsen, G. D. Pusch, M. Souza, E. Selkov et al., WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction, Nucleic Acids Research, vol.28, issue.1, pp.123-125, 2000.
DOI : 10.1093/nar/28.1.123

D. Sulakhe, A. Rodriguez, D. Souza, M. Wilde, M. Nefedova et al., Gnare: Automated System For High-Throughput Genome Analysis With Grid Computational Backend, Journal of Clinical Monitoring and Computing, vol.47, issue.11, pp.4-5361, 2005.
DOI : 10.1007/s10877-005-3463-y

C. Hyland, J. W. Pinney, G. A. Mcconkey, and D. R. Westhead, metaSHARK: a WWW platform for interactive exploration of metabolic networks, Nucleic Acids Research, vol.34, issue.Web Server, 2006.
DOI : 10.1093/nar/gkl196

J. W. Pinney, M. W. Shirley, G. A. Mcconkey, and D. R. Westhead, metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella, Nucleic Acids Research, vol.33, issue.4, pp.1399-1409, 2005.
DOI : 10.1093/nar/gki285

D. Thain, T. Tannenbaum, and M. Livny, Distributed computing in practice: the Condor experience, Concurrency and Computation: Practice and Experience, vol.11, issue.2-4, pp.323-356, 2005.
DOI : 10.1002/cpe.938

S. Roux, . Faubladier, . Michael, and A. ;. Mahul, Metavir: a web server dedicated to virome analysis, Bioinformatics, vol.27, issue.21, pp.27-48, 2011.
DOI : 10.1093/bioinformatics/btr519

URL : https://hal.archives-ouvertes.fr/hal-00841495

V. Hofmann-apitius, A. Breton, E. Louw, and . Marechal, Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?, Malaria Journal, vol.5, issue.110, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00121210

V. Jacq, M. Breton, and . Hofmann, Design of Plasmepsine Inhibitors : A virtual high throughput screening approach on the EGEE Grid, J. Chem. Inf. Model, vol.47, issue.5, pp.1818-1828, 2007.

S. Cipière, P. D. Vlieger, D. Sarramia, D. R. Hill, and L. Maigne, Development of a metamodel for medical database management on a grid network, CCGRID '12 Proceedings of the 2012 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, pp.892-897, 2012.

J. Vinod-kasam, M. Salzemann, A. Botha, G. Dacosta, R. Degliesposti et al., WISDOM-II: Screening against multiple targets implicated in malaria using computational grid infrastructures, Malaria Journal, vol.8, issue.1, p.88, 2009.
DOI : 10.1186/1475-2875-8-88

V. Milanesi, S. C. Breton, Y. Lin, and . Wu, Grid enabled high throughput in silico screening against Influenza A neuraminidase, IEEE transaction on nanobioscience, vol.5, pp.4-288, 2006.
URL : https://hal.archives-ouvertes.fr/in2p3-00114129

H. T. Nguyen, S. Ryu, S. Lee, V. Hwang, J. Breton et al., Virtual screening identification of novel severe acute respiratory syndrome 3C-like protease inhibitors and in vitro confirmation, Bioorganic & Medicinal Chemistry Letters, vol.21, issue.10, pp.3088-3091, 2011.
DOI : 10.1016/j.bmcl.2011.03.034

T. T. , H. Nguyen, H. Ryu, S. Se-hoon-lee, J. Hwang et al., Discovery of novel inhibitors 1 for human intestinal maltase: virtual screening in a WISDOM environment and in vitro évaluation, Biotechnology Letters, vol.33, pp.2185-2191, 2011.

M. Schwichtenberg, V. Hofmann, and . Breton, Grid enabled virtual screening against malaria, Journal of Grid Computing Vol, vol.6, issue.1, pp.29-43, 2008.
URL : https://hal.archives-ouvertes.fr/in2p3-00114120

H. M. Berman, K. Henrick, and H. Nakamura, Announcing the worldwide Protein Data Bank, Nature Structural Biology, vol.10, issue.12, p.980, 2003.
DOI : 10.1038/nsb1203-980

R. Diarena, G. Fabbretti, V. Fettahi, A. Flegel, V. Gisel et al., PDB_REDO : automated re-refinement of X-Ray structure models in the PDB, Journal of Applied Cristallography, vol.42, pp.1-9, 2009.
URL : https://hal.archives-ouvertes.fr/in2p3-00385213

F. Gagliardi, B. Jones, F. Grey, M. E. Bégin, and M. Heikkurinen, Building an infrastructure for scientific Grid computing: status and goals of the EGEE project, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.363, issue.1833, pp.1729-1742, 2005.
DOI : 10.1098/rsta.2005.1603

. S. Ahn, Performance analysis and optimization of AMGA for the large-scale virtual screening, Software Practice & Experience, pp.1055-1072, 2009.

A. Burki, K. S. Botnen, and . Tabrizi, Air: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses, BMC Bioinformatics, vol.10, issue.1, p.357, 2009.

K. Hanekamp, U. Bohnebeck, B. Beszteri, and K. Valentin, PhyloGena a user-friendly system for automated phylogenetic annotation of unknown sequences, Bioinformatics, vol.23, issue.7, pp.793-801, 2007.
DOI : 10.1093/bioinformatics/btm016

A. Darling, L. Carey, and W. Feng, The Design, Implementation, and Evaluation of mpiBLAST, 4th International Conference on Linux Clusters: The HPC Revolution 2003 in conjunction with ClusterWorld Conference & Expo, 2003.

T. Glatard, J. Montagnat, D. Lingrand, and X. Pennec, Flexible and Efficient Workflow Deployment of Data-Intensive Applications On Grids With MOTEUR, International Journal of High Performance Computing Applications, vol.22, issue.3, pp.347-360, 2008.
DOI : 10.1177/1094342008096067

R. C. Edgar, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-97, 2004.
DOI : 10.1093/nar/gkh340

G. E. Jordan and W. H. Piel, PhyloWidget: web-based visualizations for the tree of life, Bioinformatics, vol.24, issue.14, pp.1641-1642, 2008.
DOI : 10.1093/bioinformatics/btn235

M. V. Han and C. M. Zmasek, phyloXML: XML for evolutionary biology and comparative genomics, BMC Bioinformatics, vol.10, issue.1, p.356, 2009.
DOI : 10.1186/1471-2105-10-356

URL : http://doi.org/10.1186/1471-2105-10-356

M. W. Peterson and M. E. Colosimo, TreeViewJ: An application for viewing and analyzing phylogenetic trees, Source Code for Biology and Medicine, vol.2, issue.1, p.7, 2007.
DOI : 10.1186/1751-0473-2-7

J. Dutheil and N. Galtier, BAOBAB: a Java editor for large phylogenetic trees, Bioinformatics, vol.18, issue.6, pp.892-893, 2002.
DOI : 10.1093/bioinformatics/18.6.892

K. Chen and L. Pachter, Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities, PLoS Computational Biology, vol.30, issue.2, 2005.
DOI : 0920-8569(2005)030[0151:AOTVPP]2.0.CO;2

. Goodman, Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products, Chemistry & Biology, vol.5, issue.98, pp.245-249, 1998.

. Margulies, Genome sequencing in microfabricated high-density picolitre reactors, Nature, vol.2, pp.376-380, 2005.
DOI : 10.1016/0888-7543(88)90007-9

A. Pernthaler, A. E. Dekas, C. T. Brown, S. K. Goffredi, T. Embaye et al., Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics, Proceedings of the National Academy of Sciences, vol.105, issue.19, pp.7052-7057, 2008.
DOI : 10.1073/pnas.0711303105

. Venter, The Sequence of the Human Genome, Science, vol.291, issue.5507, p.1304, 2001.
DOI : 10.1126/science.1058040

URL : https://hal.archives-ouvertes.fr/hal-00465088

. Wheeler, The complete genome of an individual by massively parallel DNA sequencing, Nature, vol.2, issue.7189, pp.872-875, 2008.
DOI : 10.1038/nature06884

J. C. Wooley, A. Godzik, and I. Friedberg, A Primer on Metagenomics, PLoS Computational Biology, vol.14, issue.2, p.1000667, 2010.
DOI : 10.1371/journal.pcbi.1000667.t002

M. Hess, A. Sczyrba, R. Egan, T. Kim, H. Chokhawala et al., Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen, Science, vol.331, issue.6016, pp.463-467, 2011.
DOI : 10.1126/science.1200387

J. Qui, A human gut microbial gene catalogue established by metagenomic sequencing, Nature, vol.464, issue.7285, pp.59-65, 2009.

M. Sogin, H. Morrison, J. Huber, M. Welch, D. Huse et al., Microbial diversity in the deep sea and the underexplored "rare biosphere", Proc. Natl. Acad. Sci. USA, pp.12115-12120, 2006.
DOI : 10.1073/pnas.0605127103

L. Roesch, R. Fulthorpe, A. Riva, G. Casella, and A. Hadwin, Pyrosequencing enumerates and contrasts soil microbial diversity, The ISME Journal, vol.7, pp.283-290, 2007.
DOI : 10.1038/ismej.2007.53

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2970868

A. Andersson, M. Lindberg, H. Jakobsson, F. Bäckhed, and P. Nyren, Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing, PLoS ONE, vol.11, issue.7, p.2836, 2008.
DOI : 10.1371/journal.pone.0002836.s003

C. Quince, A. Lanzen, R. Davenport, and P. Turnbaugh, Removing Noise From Pyrosequenced Amplicons, BMC Bioinformatics, vol.12, issue.1, p.38, 2011.
DOI : 10.1186/1471-2105-12-38

URL : http://doi.org/10.1186/1471-2105-12-38

N. Taib, G. Bronner, and D. Debroas, Annotation phylogénétique de sequences du gène codant pour l'ARNr 18S généré par pyrosequençage (PANAM), 2010.

R. Edgar, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, vol.26, issue.19, pp.2460-2461, 2010.
DOI : 10.1093/bioinformatics/btq461

M. Price, P. Dehal, and P. Arkin, FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix, Molecular Biology and Evolution, vol.26, issue.7, 2009.
DOI : 10.1093/molbev/msp077

D. T. Tung, T. Najwa, H. Quang, N. Jean-christophe, C. Gisele et al., Portage de ePANAM sur la grille de calcul Rencontres Scientifiques France Grilles, 2011.

D. Wu, A. Hartman, and N. Ward, An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP), PLoS ONE, vol.360, issue.1462, p.2566, 2008.
DOI : 10.1371/journal.pone.0002566.s003