F. , L. P. , and M. Wierup, Salmonella contamination: a significant challenge to the global marketing of animal food products, Rev Sci Tech, vol.25, issue.2, pp.541-54, 2006.

Y. Millemann, [Pathogenic power of Salmonellae: virulence factors and study models], Vet Res, vol.29, issue.5, pp.385-407, 1998.

S. Schwarz and E. Chaslus-dancla, Use of antimicrobials in veterinary medicine and mechanisms of resistance, Veterinary Research, vol.32, issue.3/4, pp.3-4, 2001.
DOI : 10.1051/vetres:2001120
URL : https://hal.archives-ouvertes.fr/hal-00902704

A. Cloeckaert and S. Schwarz, Typhimurium DT104, Veterinary Research, vol.32, issue.3/4, pp.3-4, 2001.
DOI : 10.1051/vetres:2001126
URL : https://hal.archives-ouvertes.fr/hal-00902702

S. L. Bronzwaer, U. Buchholz, and J. L. , [International surveillance of antimicrobial resistance in Europe: now we also need to monitor antibiotic use], Euro Surveill, vol.6, issue.1, pp.1-2, 2001.

F. C. Tenover, Mechanisms of antimicrobial resistance in bacteria, Am J Med, vol.1196, pp.3-10, 2006.

H. Harbottle, Genetics of Antimicrobial Resistance, Animal Biotechnology, vol.42, issue.2, pp.111-135, 2006.
DOI : 10.1128/AAC.45.7.2054-2059.2001

G. B. Michael, Genes and mutations conferring antimicrobial resistance in Salmonella: an update. Microbes Infect Structural and functional study of the phenicol-specific efflux pump FloR belonging to the major facilitator superfamily, Antimicrob Agents Chemother, vol.8, issue.77, pp.49-2965, 2005.

A. Toussaint and C. Merlin, Mobile Elements as a Combination of Functional Modules, Plasmid, vol.47, issue.1, pp.26-35, 2002.
DOI : 10.1006/plas.2001.1552

P. Boerlin and R. J. Reid-smith, Antimicrobial resistance: its emergence and transmission, Animal Health Research Reviews, vol.12, issue.02, pp.115-141, 2008.
DOI : 10.1093/jac/43.6.846

A. Norman, L. H. Hansen, and S. J. Sorensen, Conjugative plasmids: vessels of the communal gene pool, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.304, issue.5667, pp.364-2275, 1527.
DOI : 10.1126/science.1093857

J. Mahillon, Transposons as gene haulers, APMIS, vol.88, issue.S84, pp.29-36, 1998.
DOI : 10.1111/j.1600-0463.1998.tb05645.x

J. Mahillon and M. Chandler, Insertion sequences, Microbiol Mol Biol Rev, vol.62, issue.3, pp.725-74, 1998.
URL : https://hal.archives-ouvertes.fr/hal-00021179

M. A. Toleman, P. M. Bennett, and T. R. Walsh, ISCR Elements: Novel Gene-Capturing Systems of the 21st Century?, Microbiology and Molecular Biology Reviews, vol.70, issue.2, pp.296-316, 2006.
DOI : 10.1128/MMBR.00048-05

V. Burrus, Conjugative transposons: the tip of the iceberg, Gene cassettes: a new class of mobile element. Microbiology, pp.601-611, 1995.
DOI : 10.1046/j.1365-2958.2002.03191.x

D. Mazel, A Distinctive Class of Integron in the Vibrio cholerae Genome, Science, vol.280, issue.5363, pp.605-613, 1998.
DOI : 10.1126/science.280.5363.605

D. A. Rowe-magnus, A. M. Guerout, and D. Mazel, Super-integrons, Research in Microbiology, vol.150, issue.9-10, pp.9-10, 1999.
DOI : 10.1016/S0923-2508(99)00127-8

M. R. Mulvey, The genetics of Salmonella genomic island 1, Microbes and Infection, vol.8, issue.7, pp.1915-1937, 2006.
DOI : 10.1016/j.micinf.2005.12.028

C. Poppe, Salmonella typhimurium DT104: a virulent and drug-resistant pathogen, Can Vet J, vol.39, issue.9, pp.559-65, 1998.

E. J. Threlfall, Epidemic Salmonella typhimurium DT 104--a truly international multiresistant clone, 26. Helms, M., S. Ethelberg, and K. Molbak, International Salmonella Typhimurium DT104 infections, pp.7-10, 1992.
DOI : 10.1093/jac/46.1.7

E. M. Ribot, Salmonella enterica serotype Typhimurium DT104 isolated from humans, United States Characterization of Salmonella enterica serovar typhimurium DT104 isolated from Denmark and comparison with isolates from Europe and the United States, Emerg Infect Dis J Clin Microbiol, vol.8, issue.384, pp.387-91, 1985.

I. Casin, Isolates in France Belong Predominantly to a DT104 Clone with the Chromosome??? and Integron???Encoded ?????Lactamase PSE???1, The Journal of Infectious Diseases, vol.179, issue.5, pp.1173-82, 1999.
DOI : 10.1086/314733

R. Prager, Clonal Relationship of Salmonella enterica Serovar Typhimurium Phage Type DT104 in Germany and Austria, Zentralblatt f??r Bakteriologie, vol.289, issue.4, pp.399-414, 1999.
DOI : 10.1016/S0934-8840(99)80081-4

A. Markogiannakis, Multiple clones within multidrug-resistant Salmonella enterica serotype Typhimurium phage type DT104. The Greek Nontyphoidal Salmonella Study Group, J Clin Microbiol, vol.38, issue.3, pp.1269-71, 2000.

D. A. Boyd, Typhymurium DT104, FEMS Microbiology Letters, vol.189, issue.2, pp.285-91, 2000.
DOI : 10.1111/j.1574-6968.2000.tb09245.x

D. Boyd, Complete Nucleotide Sequence of a 43-Kilobase Genomic Island Associated with the Multidrug Resistance Region of Salmonella enterica Serovar Typhimurium DT104 and Its Identification in Phage Type DT120 and Serovar Agona, Journal of Bacteriology, vol.183, issue.19, pp.5725-5757, 1996.
DOI : 10.1128/JB.183.19.5725-5732.2001

S. R. Partridge, Family of Class 1 Integrons Related to In4 from Tn1696, Antimicrobial Agents and Chemotherapy, vol.45, issue.11, pp.45-3014, 2001.
DOI : 10.1128/AAC.45.11.3014-3020.2001

S. R. Partridge, Transposons Tn1696 and Tn21 and Their Integrons In4 and In2 Have Independent Origins, Antimicrobial Agents and Chemotherapy, vol.45, issue.4, pp.1263-70, 2001.
DOI : 10.1128/AAC.45.4.1263-1270.2001

C. E. Briggs and P. M. Fratamico, Molecular characterization of an antibiotic resistance gene cluster of Salmonella typhimurium DT104, Antimicrob Agents Chemother, vol.43, issue.4, pp.846-855, 1999.

D. G. White, Characterization of chloramphenicol and florfenicol resistance in Escherichia coli associated with bovine diarrhea, J Clin Microbiol, issue.12, pp.38-4593, 2000.

A. Cloeckaert, Plasmid-Mediated Florfenicol Resistance Encoded by the floR Gene in Escherichia coli Isolated from Cattle, Antimicrobial Agents and Chemotherapy, vol.44, issue.10, pp.44-2858, 2000.
DOI : 10.1128/AAC.44.10.2858-2860.2000

M. A. Arcangioli, DT104, FEMS Microbiology Letters, vol.174, issue.2, pp.327-359, 1999.
DOI : 10.1111/j.1574-6968.1999.tb13586.x

C. Kehrenberg, S. Schwarz-schnabel, E. L. , and A. L. Jones, Plasmid-borne florfenicol resistance in Pasteurella multocida, Journal of Antimicrobial Chemotherapy, vol.55, issue.5, pp.773-778, 1999.
DOI : 10.1093/jac/dki102

L. Bissonnette, Characterization of the nonenzymatic chloramphenicol resistance (cmlA) gene of the In4 integron of Tn1696: similarity of the product to transmembrane transport proteins., Journal of Bacteriology, vol.173, issue.14, pp.173-4493, 1991.
DOI : 10.1128/jb.173.14.4493-4502.1991

M. A. Davis, Reply to Drs. Angulo and Collignon, Emerging Infectious Diseases, vol.6, issue.4, pp.437-445, 2000.
DOI : 10.3201/eid0604.000430

D. Boyd, Characterization of Variant Salmonella Genomic Island 1 Multidrug Resistance Regions from Serovars Typhimurium DT104 and Agona, Antimicrobial Agents and Chemotherapy, vol.46, issue.6, pp.1714-1736, 2002.
DOI : 10.1128/AAC.46.6.1714-1722.2002

B. Doublet, Variant Salmonella genomic island 1 antibiotic resistance gene cluster in Salmonella enterica serovar Albany, Emerg Infect Dis, issue.95, pp.585-91, 2003.

S. Schwarz, Molecular basis of bacterial resistance to chloramphenicol and florfenicol, FEMS Microbiology Reviews, vol.28, issue.5, pp.519-561, 2004.
DOI : 10.1016/j.femsre.2004.04.001

B. Doublet, Variant Salmonella Genomic Island 1 Antibiotic Resistance Gene Cluster Containing a Novel 3'-N-Aminoglycoside Acetyltransferase Gene Cassette, aac(3)-Id, in Salmonella enterica Serovar Newport, Antimicrobial Agents and Chemotherapy, vol.48, issue.10, pp.48-3806, 2004.
DOI : 10.1128/AAC.48.10.3806-3812.2004

M. R. Mulvey, , Canada, Emerging Infectious Diseases, vol.10, issue.7, pp.1307-1317, 2004.
DOI : 10.3201/eid1007.030862

M. Akiba, Detection and characterization of variant Salmonella genomic island 1s from Salmonella Derby isolates, Jpn J Infect Dis, vol.59, issue.5, pp.341-346, 2006.

G. Arlet, Salmonella resistant to extended-spectrum cephalosporins: prevalence and epidemiology, Microbes and Infection, vol.8, issue.7, pp.1945-54, 2006.
DOI : 10.1016/j.micinf.2005.12.029

A. M. Ahmed, A. I. Hussein, and T. Shimamoto, Proteus mirabilis clinical isolate harbouring a new variant of Salmonella genomic island 1 containing the multiple antibiotic resistance region, Journal of Antimicrobial Chemotherapy, vol.59, issue.2, pp.184-90, 2007.
DOI : 10.1093/jac/dkl471

C. H. Chiu, Variant Salmonella genomic island 1 antibiotic resistance gene clusters in Salmonella enterica serovar Derby isolates from humans in Taiwan, Salmonella enterica Serovar Kentucky. Antimicrob Agents Chemother, pp.325-331, 2007.
DOI : 10.1093/jac/dkl475

A. T. Vo, A novel Salmonella genomic island 1 and rare integron types in Salmonella Typhimurium isolates from horses in The Netherlands, Journal of Antimicrobial Chemotherapy, vol.59, issue.4, pp.594-603, 2007.
DOI : 10.1093/jac/dkl531

D. A. Boyd, Salmonella Genomic Island 1 (SGI1), Variant SGI1-I, and New Variant SGI1-O in Proteus mirabilis Clinical and Food Isolates from China, Antimicrobial Agents and Chemotherapy, vol.52, issue.1, pp.340-344, 2008.
DOI : 10.1128/AAC.00902-07

B. Doublet, Novel Insertion Sequence- and Transposon-Mediated Genetic Rearrangements in Genomic Island SGI1 of Salmonella enterica Serovar Kentucky, Antimicrobial Agents and Chemotherapy, vol.52, issue.10, pp.52-3745, 2008.
DOI : 10.1128/AAC.00525-08

R. S. Levings, S. P. Djordjevic, and R. M. Hall, SGI2, a Relative of Salmonella Genomic Island SGI1 with an Independent Origin, Antimicrobial Agents and Chemotherapy, vol.52, issue.7, pp.52-2529, 2008.
DOI : 10.1128/AAC.00189-08

A. T. Vo, Antimicrobial resistance, class 1 integrons and a novel variant of Genomic Island 1 in Salmonella isolates from Vietnam Emergence and evolution of multiply antibiotic-resistant Salmonella enterica serovar Paratyphi B D-tartrate-utilizing strains containing SGI1 Truncated tni module adjacent to the complex integron of salmonella genomic island 1 in Salmonella enterica serovar Virchow, Antimicrob Agents Chemother Antimicrob Agents Chemother Antimicrob Agents Chemother, vol.63, issue.642, pp.2319-2345, 2008.

B. Doublet, Association of IS26-composite transposons and complex In4-type integrons generates novel multidrug resistance loci in Salmonella genomic island 1, Journal of Antimicrobial Chemotherapy, vol.63, issue.2, pp.282-291, 2009.
DOI : 10.1093/jac/dkn500

S. Kim, An Additional Novel Antimicrobial Resistance Gene Cluster in Salmonella Genomic Island 1 of a Salmonella enterica Serovar Typhimurium DT104 Human Isolate The Salmonella genomic island 1 is an integrative mobilizable element, Foodborne Pathog Dis Mol Microbiol, issue.6, pp.55-1911, 2005.

A. Cloeckaert, S. Baucheron, and E. Chaslus-dancla, Nonenzymatic Chloramphenicol Resistance Mediated by IncC Plasmid R55 Is Encoded by a floR Gene Variant, Antimicrobial Agents and Chemotherapy, vol.45, issue.8, pp.45-2381, 2001.
DOI : 10.1128/AAC.45.8.2381-2382.2001

B. Doublet, Secondary chromosomal attachment site and tandem integration of the mobilizable Salmonella genomic island 1 Hospitalization and antimicrobial resistance in Salmonella outbreaks, PLoS ONE Emerg Infect Dis, vol.3, issue.46, pp.11-943, 1984.

M. K. Glynn, Emergence of multidrug-resistant Salmonella enterica serotype typhimurium DT104 infections in the United States, N Engl J Med, pp.338-1333, 1998.

L. J. Martin, Serotype Typhimurium Infections, Excess mortality associated with antibiotic resistant Salmonella typhimurium]. Ugeskr Laeger, pp.377-84, 2003.
DOI : 10.1086/381270

C. A. Allen, In Vitro and In Vivo Assessment of Salmonella enterica Serovar Typhimurium DT104 Virulence, Infection and Immunity, vol.69, issue.7, pp.69-4673, 2001.
DOI : 10.1128/IAI.69.7.4673-4677.2001

S. A. Carlson, Identification of diminished tissue culture invasiveness among multiple antibiotic resistant Salmonella typhimurium DT104, Microbial Pathogenesis, vol.28, issue.1, pp.37-44, 2000.
DOI : 10.1006/mpat.1999.0322

S. A. Carlson, Evaluation of invasion-conferring genotypes and antibiotic-induced hyperinvasive phenotypes in multiple antibiotic resistant Salmonella typhimurium DT104, Microbial Pathogenesis, vol.28, issue.6, pp.373-381, 2000.
DOI : 10.1006/mpat.2000.0355

Y. A. Anriany, Salmonella enterica Serovar Typhimurium DT104 Displays a Rugose Phenotype, Applied and Environmental Microbiology, vol.67, issue.9, pp.4048-56, 2001.
DOI : 10.1128/AEM.67.9.4048-4056.2001

Y. Mizunoe, Isolation and characterization of rugose form of Vibrio cholerae O139 strain MO10, Infect Immun, vol.67, issue.2, pp.958-63, 1999.

E. W. Rice, Chlorine and survival of "rugose" Vibrio cholerae, The Lancet, vol.340, issue.8821, pp.340-740, 1992.
DOI : 10.1016/0140-6736(92)92289-R

S. N. Wai, Vibrio cholerae O1 strain TSI-4 produces the exopolysaccharide materials that determine colony morphology, stress resistance, and biofilm formation

F. H. Yildiz and G. K. Schoolnik, Vibrio cholerae O1 El Tor: Identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation, Proceedings of the National Academy of Sciences, vol.96, issue.7, pp.96-4028, 1999.
DOI : 10.1073/pnas.96.7.4028

A. P. White, Thin Aggregative Fimbriae and Cellulose Enhance Long-Term Survival and Persistence of Salmonella, Journal of Bacteriology, vol.188, issue.9, pp.3219-3246, 1998.
DOI : 10.1128/JB.188.9.3219-3227.2006

X. Zogaj, The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix, Molecular Microbiology, vol.32, issue.6, pp.39-1452, 2001.
DOI : 10.1093/glycob/9.1.31

U. Romling, Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae, Cellular and Molecular Life Sciences, vol.62, issue.11, pp.1234-1280, 2005.
DOI : 10.1007/s00018-005-4557-x

A. P. White and M. G. Surette, Comparative Genetics of the rdar Morphotype in Salmonella, Journal of Bacteriology, vol.188, issue.24, pp.8395-406, 2006.
DOI : 10.1128/JB.00798-06

S. H. Kim and C. I. Wei, Biofilm Formation by Multidrug-Resistant Salmonella enterica Serotype Typhimurium Phage Type DT104 and Other Pathogens, Journal of Food Protection, vol.70, issue.1, pp.22-31, 2007.
DOI : 10.4315/0362-028X-70.1.22

M. Malcova, Biofilm formation in field strains of Salmonella enterica serovar Typhimurium: Identification of a new colony morphology type and the role of SGI1 in biofilm formation, Veterinary Microbiology, vol.129, issue.3-4, pp.182-2675, 2000.
DOI : 10.1016/j.vetmic.2007.12.006

M. S. Aparna and S. Yadav, Biofilms: microbes and disease, Brazilian Journal of Infectious Diseases, vol.12, issue.6, pp.526-556, 2008.
DOI : 10.1590/S1413-86702008000600016
URL : http://doi.org/10.1590/s1413-86702008000600016

R. D. Monds and G. A. O-'toole, The developmental model of microbial biofilms: ten years of a paradigm up for review, Trends in Microbiology, vol.17, issue.2, pp.73-87, 2009.
DOI : 10.1016/j.tim.2008.11.001

E. Karatan and P. Watnick, Signals, Regulatory Networks, and Materials That Build and Break Bacterial Biofilms, Microbiology and Molecular Biology Reviews, vol.73, issue.2, pp.310-357, 2009.
DOI : 10.1128/MMBR.00041-08
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2698413

C. Solano, biofilm formation: critical role of cellulose, Molecular Microbiology, vol.39, issue.3, pp.793-808, 2002.
DOI : 10.1046/j.1365-2958.2002.02802.x

P. S. Stewart and M. J. Franklin, Physiological heterogeneity in biofilms, Nature Reviews Microbiology, vol.167, issue.3, pp.199-210, 2008.
DOI : 10.1038/nrmicro1838

J. W. Costerton, Biofilms, the customized microniche., Journal of Bacteriology, vol.176, issue.8, pp.2137-2179, 1994.
DOI : 10.1128/jb.176.8.2137-2142.1994

K. Lewis and D. Shah, Persister cells and the riddle of biofilm survival, Persisters: a distinct physiological state of E. coli, pp.267-74, 2005.
DOI : 10.1007/s10541-005-0111-6

B. M. Ahmer, Cell-to-cell signalling in Escherichia coli and Salmonella enterica, Molecular Microbiology, vol.71, issue.4, pp.933-978, 2004.
DOI : 10.1111/j.1365-2958.2004.04054.x

F. Boyen, Quorum sensing in veterinary pathogens: Mechanisms, clinical importance and future perspectives, Veterinary Microbiology, vol.135, issue.3-4, pp.3-4, 2009.
DOI : 10.1016/j.vetmic.2008.12.025
URL : https://hal.archives-ouvertes.fr/hal-00485527

M. Walters and V. Sperandio, Quorum sensing in Escherichia coli and Salmonella, International Journal of Medical Microbiology, vol.296, issue.2-3, pp.125-156, 2006.
DOI : 10.1016/j.ijmm.2006.01.041

L. Pilousova, Retron reverse transcriptase (rrtT) can be lost in multidrug resistant Salmonella enterica serovar Typhimurium DT 104 strains and influences virulence for mice, Vet Microbiol, pp.111-114, 2005.

A. C. Ward, Characterization of Pasteurellaspp isolated from healthy domestic pack goats and evaluation of the effects of a commercial Pasteurella vaccine, American Journal of Veterinary Research, vol.63, issue.1, pp.119-142, 2002.
DOI : 10.2460/AJVR.2002.63.119

N. W. Dyer, Seasonal incidence and antibiotic susceptibility patterns of Pasteurellaceae isolated from American bison (Bison bison), Can J Vet Res, vol.65, issue.1, pp.7-14, 2001.

B. Catry, tRNA-intergenic spacer PCR for the identification of Pasteurella and Mannheimia spp., Veterinary Microbiology, vol.98, issue.3-4, pp.98-101, 2004.
DOI : 10.1016/j.vetmic.2003.10.027

P. Scholz, Complete nucleotide sequence and gene organization of the broad-host-range plasmid RSF1010, Gene, vol.75, issue.2, pp.271-88, 1989.
DOI : 10.1016/0378-1119(89)90273-4

J. F. Lancashire, Plasmid-Encoded Tet B Tetracycline Resistance in Haemophilus parasuis, Antimicrobial Agents and Chemotherapy, vol.49, issue.5, pp.1927-1958, 2005.
DOI : 10.1128/AAC.49.5.1927-1931.2005

C. Kehrenberg and S. Schwarz, Nucleotide sequence and organization of plasmid pMVSCS1 from Mannheimia varigena: identification of a multiresistance gene cluster, Journal of Antimicrobial Chemotherapy, vol.49, issue.2
DOI : 10.1093/jac/49.2.383

M. Daly, Comparison of multidrug resistance gene regions between two geographically unrelated Salmonella serotypes, Journal of Antimicrobial Chemotherapy, vol.55, issue.4, pp.558-61, 2005.
DOI : 10.1093/jac/dki015

P. Hendrikx, Development of Performance Indicators for the Bovine Clinical Salmonellosis Surveillance Network in France, Journal of Veterinary Medicine Series B, vol.16, issue.10, pp.52-465, 2005.
DOI : 10.1046/j.1439-0450.2003.00666.x
URL : https://hal.archives-ouvertes.fr/hal-00402019

F. X. Weill, Emergence of extended-spectrum-beta-lactamase (CTX-M-9)- producing multiresistant strains of Salmonella enterica serotype Virchow in poultry and humans in France, J Clin Microbiol, issue.12, pp.42-5767, 2004.

B. Doublet, Novel Plasmid-Encoded Ceftazidime-Hydrolyzing CTX-M-53 Extended-Spectrum ??-Lactamase from Salmonella enterica Serotypes Westhampton and Senftenberg, Antimicrobial Agents and Chemotherapy, vol.53, issue.5, pp.1944-51, 2009.
DOI : 10.1128/AAC.01581-08

S. Baucheron, Serovar Typhimurium Phage Type DT204, Microbial Drug Resistance, vol.8, issue.4, pp.281-290, 2002.
DOI : 10.1089/10766290260469543

H. Izumiya, Characterization of Isolates of Salmonella enterica Serovar Typhimurium Displaying High-Level Fluoroquinolone Resistance in Japan, Journal of Clinical Microbiology, vol.43, issue.10, pp.43-5074, 2005.
DOI : 10.1128/JCM.43.10.5074-5079.2005

J. J. Carrique-mas, Trends in phage types and antimicrobial resistance of Salmonella enterica serovar Enteritidis isolated from animals in Great Britain from, Vet Rec, issue.17, pp.162-541, 1990.

J. J. Carrique-mas, Observations related to the Salmonella EU layer baseline survey in the United Kingdom: follow-up of positive flocks and sensitivity issues, Epidemiology and Infection, vol.137, issue.11, pp.136-1537, 2008.
DOI : 10.1111/j.1365-2672.2006.02916.x

D. Girlich, Extended-spectrum beta-lactamase CTX-M-1 in Escherichia coli isolates from healthy poultry in France, Appl Environ Microbiol, issue.14, pp.73-4681, 2007.

J. Y. Madec, Prevalence of Fecal Carriage of Acquired Expanded-Spectrum Cephalosporin Resistance in Enterobacteriaceae Strains from Cattle in France, Journal of Clinical Microbiology, vol.46, issue.4, pp.1566-1573, 2008.
DOI : 10.1128/JCM.02299-07
URL : https://hal.archives-ouvertes.fr/hal-00372769

M. Y. Popoff, Supplement 2000 (no. 44) to the Kauffmann-White scheme, Research in Microbiology, vol.152, issue.10, pp.152-907, 2001.
DOI : 10.1016/S0923-2508(01)01274-8

K. A. Datsenko and B. L. Wanner, One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products, Proceedings of the National Academy of Sciences, vol.97, issue.12, pp.97-6640, 2000.
DOI : 10.1073/pnas.120163297

G. D. Christensen, Adherence of coagulase-negative staphylococci to plastic tissue culture plates: a quantitative model for the adherence of staphylococci to medical devices, J Clin Microbiol, issue.6, pp.22-996, 1985.

O. 'toole and G. A. , Genetic approaches to study of biofilms, Methods Enzymol, issue.310, pp.91-109, 1999.

V. Leriche, P. Sibille, and B. Carpentier, Use of an Enzyme-Linked Lectinsorbent Assay To Monitor the Shift in Polysaccharide Composition in Bacterial Biofilms, Applied and Environmental Microbiology, vol.66, issue.5, pp.1851-1857, 2000.
DOI : 10.1128/AEM.66.5.1851-1856.2000

R. Ahmed, A. Hussein, A. Shimamoto, and T. , Proteus mirabilis clinical isolate harbouring a new variant of Salmonella genomic island 1 containing the multiple antibiotic resistance region, Journal of Antimicrobial Chemotherapy, vol.59, issue.2
DOI : 10.1093/jac/dkl471

M. Arcangioli, S. Leroy-setrin, and J. Martel, DT104, FEMS Microbiology Letters, vol.174, issue.2, pp.327-332, 1999.
DOI : 10.1111/j.1574-6968.1999.tb13586.x

S. Baucheron, H. Imberechts, and E. Chaslus-dancla, Serovar Typhimurium Phage Type DT204, Microbial Drug Resistance, vol.8, issue.4, pp.281-289, 2002.
DOI : 10.1089/10766290260469543

D. Boyd, A. Cloeckaert, and E. Chaslus-dancla, Characterization of Variant Salmonella Genomic Island 1 Multidrug Resistance Regions from Serovars Typhimurium DT104 and Agona, Antimicrobial Agents and Chemotherapy, vol.46, issue.6, pp.1714-1722, 2002.
DOI : 10.1128/AAC.46.6.1714-1722.2002

D. Boyd, G. Peters, and A. Cloeckaert, Complete Nucleotide Sequence of a 43-Kilobase Genomic Island Associated with the Multidrug Resistance Region of Salmonella enterica Serovar Typhimurium DT104 and Its Identification in Phage Type DT120 and Serovar Agona, Journal of Bacteriology, vol.183, issue.19, pp.5725-5732, 2001.
DOI : 10.1128/JB.183.19.5725-5732.2001

D. Boyd, G. Peters, and L. Ng, Typhymurium DT104, FEMS Microbiology Letters, vol.189, issue.2, pp.285-291, 2000.
DOI : 10.1111/j.1574-6968.2000.tb09245.x

D. Boyd, X. Shi, and Q. Hu, Salmonella Genomic Island 1 (SGI1), Variant SGI1-I, and New Variant SGI1-O in Proteus mirabilis Clinical and Food Isolates from China, Antimicrobial Agents and Chemotherapy, vol.52, issue.1, pp.340-344, 2008.
DOI : 10.1128/AAC.00902-07

C. Briggs and P. Fratamico, Molecular characterization of an antibiotic resistance gene cluster of Salmonella Typhimurium DT104, Antimicrob Agents Chemother, vol.43, pp.846-849, 1999.

J. Carrique-mas, C. Papadopoulou, and S. Evans, Trends in phage types and antimicrobial resistance of Salmonella enterica serovar Enteritidis isolated from animals in Great Britain from 1990 to 2005, Veterinary Record, vol.162, issue.17, pp.541-546, 1990.
DOI : 10.1136/vr.162.17.541

M. Chazel, Y. Buret, and D. Meunier, Les salmonelloses cliniques digestives des bovins en France: l'e ´volution de l'incidence annuelle et le bilan du R, E.S.S.A.B. Bulletin des GTV, vol.30, pp.343-349, 2005.

C. Chiu, H. Chen, and L. Kao, Variant Salmonella genomic island 1 antibiotic resistance gene clusters in Salmonella enterica serovar Derby isolates from humans in Taiwan, Journal of Antimicrobial Chemotherapy, vol.59, issue.2, pp.325-326, 2007.
DOI : 10.1093/jac/dkl475

A. Cloeckaert and S. Schwarz, Typhimurium DT104, Veterinary Research, vol.32, issue.3/4, pp.301-310, 2001.
DOI : 10.1051/vetres:2001126
URL : https://hal.archives-ouvertes.fr/hal-00902702

A. Cloeckaert, S. Boumedine, K. Flaujac, and G. , Occurrence of a Salmonella enterica Serovar Typhimurium DT104-Like Antibiotic Resistance Gene Cluster Including the floR Gene in S. enterica Serovar Agona, Antimicrobial Agents and Chemotherapy, vol.44, issue.5, pp.1359-1361, 2000.
DOI : 10.1128/AAC.44.5.1359-1361.2000

S. Djordjevic, A. Cain, and N. Evershed, Emergence and Evolution of Multiply Antibiotic-Resistant Salmonella enterica Serovar Paratyphi B D-Tartrate-Utilizing Strains Containing SGI1, Antimicrobial Agents and Chemotherapy, vol.53, issue.6, pp.2319-2326, 2009.
DOI : 10.1128/AAC.01532-08

B. Doublet, D. Boyd, and M. Mulvey, genomic island 1 is an integrative mobilizable element, Molecular Microbiology, vol.49, issue.6, pp.1911-1924, 2005.
DOI : 10.1111/j.1365-2958.2005.04520.x

B. Doublet, P. Butaye, and H. Imberechts, Salmonella Genomic Island 1 Multidrug Resistance Gene Clusters in Salmonella enterica Serovar Agona Isolated in Belgium in 1992 to 2002, Antimicrobial Agents and Chemotherapy, vol.48, issue.7, pp.2510-2517, 1992.
DOI : 10.1128/AAC.48.7.2510-2517.2004

B. Doublet, C. Chu, and C. Chiu, Truncated tni Module Adjacent to the Complex Integron of Salmonella Genomic Island 1 in Salmonella enterica Serovar Virchow, Antimicrobial Agents and Chemotherapy, vol.53, issue.2, pp.824-827, 2009.
DOI : 10.1128/AAC.01015-08

B. Doublet, G. Golding, and M. Mulvey, Potential integration sites of the Salmonella genomic island 1 in Proteus mirabilis and other bacteria, Journal of Antimicrobial Chemotherapy, vol.59, issue.4, pp.1872-1875, 2007.
DOI : 10.1093/jac/dkl540

B. Doublet, S. Granier, and F. Robin, Novel Plasmid-Encoded Ceftazidime-Hydrolyzing CTX-M-53 Extended-Spectrum ??-Lactamase from Salmonella enterica Serotypes Westhampton and Senftenberg, Antimicrobial Agents and Chemotherapy, vol.53, issue.5, pp.1944-1951, 2009.
DOI : 10.1128/AAC.01581-08

B. Doublet, R. Lailler, and D. Meunier, Serovar Albany, Emerging Infectious Diseases, vol.9, issue.5, pp.585-591, 2003.
DOI : 10.3201/eid0905.020609

B. Doublet, K. Praud, and S. Bertrand, Novel Insertion Sequence- and Transposon-Mediated Genetic Rearrangements in Genomic Island SGI1 of Salmonella enterica Serovar Kentucky, Antimicrobial Agents and Chemotherapy, vol.52, issue.10, pp.3745-3754, 2008.
DOI : 10.1128/AAC.00525-08

B. Doublet, K. Praud, and F. Weill, Association of IS26-composite transposons and complex In4-type integrons generates novel multidrug resistance loci in Salmonella genomic island 1, Journal of Antimicrobial Chemotherapy, vol.63, issue.2, pp.282-289, 2009.
DOI : 10.1093/jac/dkn500

B. Doublet, F. Weill, and L. Fabre, Variant Salmonella Genomic Island 1 Antibiotic Resistance Gene Cluster Containing a Novel 3'-N-Aminoglycoside Acetyltransferase Gene Cassette, aac(3)-Id, in Salmonella enterica Serovar Newport, Antimicrobial Agents and Chemotherapy, vol.48, issue.10, pp.3806-3812, 2004.
DOI : 10.1128/AAC.48.10.3806-3812.2004

P. Ebner, K. Garner, and M. A. , Class 1 integrons in various Salmonella enterica serovars isolated from animals and identification of genomic island SGI1 in Salmonella enterica var. Meleagridis, Journal of Antimicrobial Chemotherapy, vol.53, issue.6, pp.1004-1009, 2004.
DOI : 10.1093/jac/dkh192

S. Egorova, M. Timinouni, and M. Demartin, Serotype Newport, France, Emerging Infectious Diseases, vol.14, issue.6, pp.954-957, 2008.
DOI : 10.3201/eid1406.071168
URL : http://doi.org/10.3201/eid1406.071168

D. Girlich, L. Poirel, and A. Carattoli, Extended-Spectrum ??-Lactamase CTX-M-1 in Escherichia coli Isolates from Healthy Poultry in France, Applied and Environmental Microbiology, vol.73, issue.14, pp.4681-4685, 2007.
DOI : 10.1128/AEM.02491-06

P. Hendrikx, M. Chazel, and Y. Buret, Development of Performance Indicators for the Bovine Clinical Salmonellosis Surveillance Network in France, Journal of Veterinary Medicine Series B, vol.16, issue.10, pp.465-475, 2005.
DOI : 10.1046/j.1439-0450.2003.00666.x
URL : https://hal.archives-ouvertes.fr/hal-00402019

A. Lawson, M. Dassama, and L. Ward, Serotype Typhimurium DT 12 and DT 120: A Case of MR DT 104 in Disguise?, Emerging Infectious Diseases, vol.8, issue.4, pp.434-436, 2002.
DOI : 10.3201/eid0804.010348

R. Levings, D. Lightfoot, and S. Partridge, The Genomic Island SGI1, Containing the Multiple Antibiotic Resistance Region of Salmonella enterica Serovar Typhimurium DT104 or Variants of It, Is Widely Distributed in Other S. enterica Serovars, Journal of Bacteriology, vol.187, issue.13, pp.4401-4409, 2005.
DOI : 10.1128/JB.187.13.4401-4409.2005

R. Levings, S. Partridge, and S. Djordjevic, SGI1-K, a Variant of the SGI1 Genomic Island Carrying a Mercury Resistance Region, in Salmonella enterica Serovar Kentucky, Antimicrobial Agents and Chemotherapy, vol.51, issue.1, pp.317-323, 2007.
DOI : 10.1128/AAC.01229-06

J. Madec, C. Lazizzera, and P. Chatre, Prevalence of Fecal Carriage of Acquired Expanded-Spectrum Cephalosporin Resistance in Enterobacteriaceae Strains from Cattle in France, Journal of Clinical Microbiology, vol.46, issue.4, pp.1566-1567, 2008.
DOI : 10.1128/JCM.02299-07
URL : https://hal.archives-ouvertes.fr/hal-00372769

D. Meunier, D. Boyd, and M. Mulvey, Salmonella enterica serotype Typhimurium DT104 antibiotic resistance genomic island I in serotype Paratyphi B, Emerg Infect Dis, vol.8, pp.430-433, 2002.

D. Meunier, E. Jouy, and C. Lazizzera, CTX-M-1- and CTX-M-15-type ??-lactamases in clinical Escherichia coli isolates recovered from food-producing animals in France, International Journal of Antimicrobial Agents, vol.28, issue.5, pp.402-407, 2006.
DOI : 10.1016/j.ijantimicag.2006.08.016
URL : https://hal.archives-ouvertes.fr/hal-00420302

M. Mulvey, D. Boyd, and A. Olson, The genetics of Salmonella genomic island 1, Microbes and Infection, vol.8, issue.7, pp.1915-1922, 2006.
DOI : 10.1016/j.micinf.2005.12.028

S. Partridge, H. Brown, and H. Stokes, Transposons Tn1696 and Tn21 and Their Integrons In4 and In2 Have Independent Origins, Antimicrobial Agents and Chemotherapy, vol.45, issue.4, pp.1263-1270, 2001.
DOI : 10.1128/AAC.45.4.1263-1270.2001
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC90453

S. Partridge, G. Recchia, and H. Stokes, Family of Class 1 Integrons Related to In4 from Tn1696, Antimicrobial Agents and Chemotherapy, vol.45, issue.11, pp.3014-3020, 2001.
DOI : 10.1128/AAC.45.11.3014-3020.2001

M. Popoff, Antigenic Formulas of the Salmonella Serovars,8 th edition, WHO Collaborating Center for the Reference and Research on Salmonella, 2001.

A. Ridley and E. Threlfall, DT 104, Microbial Drug Resistance, vol.4, issue.2, pp.113-118, 1998.
DOI : 10.1089/mdr.1998.4.113

E. Threlfall and J. Frost, : laboratory aspects and epidemiological applications, Journal of Applied Bacteriology, vol.121, issue.1, pp.5-16, 1990.
DOI : 10.1111/j.1365-2672.1990.tb02542.x

F. Weill, F. Guesnier, and V. Guibert, Multidrug Resistance in Salmonella enterica Serotype Typhimurium from Humans in France (1993 to 2003), Journal of Clinical Microbiology, vol.44, issue.3, pp.700-708, 1993.
DOI : 10.1128/JCM.44.3.700-708.2006

F. Weill, R. Lailler, and K. Praud, Emergence of Extended-Spectrum-??-Lactamase (CTX-M-9)-Producing Multiresistant Strains of Salmonella enterica Serotype Virchow in Poultry and Humans in France, Journal of Clinical Microbiology, vol.42, issue.12, pp.5767-5773, 2004.
DOI : 10.1128/JCM.42.12.5767-5773.2004

R. Boyd, D. A. Peters, G. A. Cloeckaert, A. Sidi-boumedine, K. Chaslus-dancla et al., Complete nucleotide sequence of a 43-kb genomic island associated with the multidrug resistance region of Salmonella enterica Typhimurium DT104 and its identification in phage type DT120 and serovar Agona, J. Bacteriol, vol.83, pp.5725-5732, 2001.

P. P. Cherepanov and W. Wackerneagel, Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant, Gene, vol.158, issue.1, pp.9-14, 1995.
DOI : 10.1016/0378-1119(95)00193-A

B. Doublet, F. X. Weill, L. Fabre, E. Chaslus-dancla, and A. Cloeckaert, Variant Salmonella Genomic Island 1 Antibiotic Resistance Gene Cluster Containing a Novel 3'-N-Aminoglycoside Acetyltransferase Gene Cassette, aac(3)-Id, in Salmonella enterica Serovar Newport, Antimicrobial Agents and Chemotherapy, vol.48, issue.10, pp.3806-3812, 2004.
DOI : 10.1128/AAC.48.10.3806-3812.2004

C. D. Ellermeier, A. Janakiraman, and J. M. Slauch, Construction of targeted single copy lac fusions using ?? Red and FLP-mediated site-specific recombination in bacteria, Gene, vol.290, issue.1-2, pp.153-161, 2002.
DOI : 10.1016/S0378-1119(02)00551-6

M. I. Husseiny and M. Hensel, Rapid Method for the Construction of Salmonella enterica Serovar Typhimurium Vaccine Carrier Strains, Infection and Immunity, vol.73, issue.3, pp.1598-1605, 2005.
DOI : 10.1128/IAI.73.3.1598-1605.2005

M. R. Mulvey, D. A. Boyd, A. B. Olson, B. Doublet, and A. Cloeckaert, The genetics of Salmonella genomic island 1. Microbes Infect, pp.1915-1922, 2006.

R. Serra-moreno, S. Acosta, J. P. Hernalsteens, J. Jofre, and M. Muniesa, Use of the lambda Red recombinase system to produce recombinant prophages carrying antibiotic resistance genes, BMC Molecular Biology, vol.7, issue.1, p.31, 2006.
DOI : 10.1186/1471-2199-7-31

S. Uzzau, N. Figueroa-bossi, S. Rubino, and L. Bossi, Epitope tagging of chromosomal genes in Salmonella, Proceedings of the National Academy of Sciences, vol.98, issue.26, pp.15264-15269, 2001.
DOI : 10.1073/pnas.261348198

R. 1. Schwarz, S. Kehrenberg, C. Doublet, and B. , Molecular basis of bacterial resistance to chloramphenicol and florfenicol, FEMS Microbiology Reviews, vol.28, issue.5, pp.519-561, 2004.
DOI : 10.1016/j.femsre.2004.04.001

C. Kehrenberg, J. Mumme, and J. Wallmann, Monitoring of florfenicol susceptibility among bovine and porcine respiratory tract pathogens collected in Germany during the years 2002 and 2003, Journal of Antimicrobial Chemotherapy, vol.54, issue.2, pp.572-576, 2002.
DOI : 10.1093/jac/dkh371

C. Kehrenberg and S. Schwarz, Plasmid-borne florfenicol resistance in Pasteurella multocida, Journal of Antimicrobial Chemotherapy, vol.55, issue.5, pp.773-778, 2005.
DOI : 10.1093/jac/dki102

M. Braibant, C. J. Chaslus-dancla, and E. , Structural and Functional Study of the Phenicol-Specific Efflux Pump FloR Belonging to the Major Facilitator Superfamily, Antimicrobial Agents and Chemotherapy, vol.49, issue.7, pp.2965-71, 2005.
DOI : 10.1128/AAC.49.7.2965-2971.2005

B. Doublet, S. Schwarz, and C. Kehrenberg, Florfenicol Resistance Gene floR Is Part of a Novel Transposon, Antimicrobial Agents and Chemotherapy, vol.49, issue.5, pp.2106-2114, 2005.
DOI : 10.1128/AAC.49.5.2106-2108.2005

C. Kehrenberg, R. Walker, and C. Wu, Antimicrobial resistance in members of the family Pasteurellaceae Antimicrobial Resistance in Bacteria of Animal Origin, pp.167-86, 2005.

P. Sneath and M. Stevens, Actinobacillus rossii sp. nov., Actinobacillus seminis sp. nov., nom. rev., Pasteurella bettii sp. nov., Pasteurella lymphangitidis sp. nov., Pasteurella mairi sp. nov., and Pasteurella trehalosi sp. nov., International Journal of Systematic Bacteriology, vol.40, issue.2, pp.148-53, 1990.
DOI : 10.1099/00207713-40-2-148

A. Ward, G. Weiser, and W. Delong, Characterization of Pasteurellaspp isolated from healthy domestic pack goats and evaluation of the effects of a commercial Pasteurella vaccine, American Journal of Veterinary Research, vol.63, issue.1, pp.119-142, 2002.
DOI : 10.2460/AJVR.2002.63.119

N. Dyer, A. Ward, and G. Weiser, Seasonal incidence and antibiotic susceptibility patterns of Pasteurellaceae from American bison (Bison bison), Can J Vet Res, vol.65, pp.7-14, 2001.

B. Catry, M. Baele, and G. Opsomer, tRNA-intergenic spacer PCR for the identification of Pasteurella and Mannheimia spp., Veterinary Microbiology, vol.98, issue.3-4, pp.251-60, 2004.
DOI : 10.1016/j.vetmic.2003.10.027

E. Koneman, S. Allen, and W. Janda, Color Atlas and Textbook of Diagnostic Microbiology, Lippincott, pp.416-439, 1997.

P. Azemun, T. Stull, and M. Roberts, Rapid detection of chloramphenicol resistance in Haemophilus influenzae., Antimicrobial Agents and Chemotherapy, vol.20, issue.2, pp.168-70, 1981.
DOI : 10.1128/AAC.20.2.168

C. Kehrenberg and S. Schwarz, Occurrence and linkage of genes coding for resistance to sulfonamides, streptomycin and chloramphenicol in bacteria of the genera Pasteurella and Mannheimia, FEMS Microbiology Letters, vol.205, issue.2, pp.283-90, 2001.
DOI : 10.1111/j.1574-6968.2001.tb10962.x

C. Kehrenberg and S. Schwarz, Molecular Analysis of Tetracycline Resistance in Pasteurella aerogenes, Antimicrobial Agents and Chemotherapy, vol.45, issue.10, pp.2885-90, 2001.
DOI : 10.1128/AAC.45.10.2885-2890.2001

S. Altschul, T. Madden, and A. Schaffer, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-402, 1997.
DOI : 10.1093/nar/25.17.3389

P. Scholz, V. Haring, and B. Wittmann-liebold, Complete nucleotide sequence and gene organization of the broad-host-range plasmid RSF1010, Gene, vol.75, issue.2, pp.271-88, 1989.
DOI : 10.1016/0378-1119(89)90273-4

J. Lancashire, T. Terry, and P. Blackall, Plasmid-Encoded Tet B Tetracycline Resistance in Haemophilus parasuis, Antimicrobial Agents and Chemotherapy, vol.49, issue.5, pp.1927-1958, 2005.
DOI : 10.1128/AAC.49.5.1927-1931.2005

B. Mollet, S. Iida, and J. Shepherd, , a new prokaryotic mobile genetic etement, Nucleic Acids Research, vol.11, issue.18, pp.6319-6349, 1983.
DOI : 10.1093/nar/11.18.6319

M. Daly, L. Villa, and C. Pezzella, Comparison of multiresistance gene regions between two geographically unrelated Salmonella serotypes

C. Kehrenberg, C. Werckenthin, and S. Schwarz, Tn5706, a transposonlike element from Pasteurella multocida mediating tetracycline resistance

P. Florfenicol-resistant, trehalosi strains with or without SGI1, three from the same Typhimurium serovar but from different 185 lineages or host origins and one from another serovar (Enteritidis)

T. S. Indeed, L. Typhimurium, and . F4-strain, which derived from the LT2 strain by 188 complementation with SGI1, also harboured a rdar phenotype at 28°C (and not the LT2 189 strain), greater fluorescence with calcofluor compared to LT2 strain (data not shown) and 190 absorbance values of 4.662. +/-0.221 by the ELLA test, to be compared with corresponding 191 values of 3.698 +/-0.229 for the LT2 strain (Figure 1B). Also, as assessed on plastic 192 microplates, the LT2 F4 strain was a greater (p = less than 0,0001) biofilm producer (average 193 biofilm formation 1, 032) than the LT2 strain

P. Velge, A. Cloeckaert, and P. Barrow, serotyp Enteritidis and multiple antibiotic resistance in other major serotypes, Veterinary Research, vol.36, issue.3, pp.267-288, 2005.
DOI : 10.1051/vetres:2005005
URL : https://hal.archives-ouvertes.fr/hal-00902974

A. Ridley and E. Threlfall, DT 104, Microbial Drug Resistance, vol.4, issue.2, pp.113-362, 1998.
DOI : 10.1089/mdr.1998.4.113

A. Cloeckaert and S. Schwarz, Typhimurium DT104, Veterinary Research, vol.32, issue.3/4, pp.301-369, 2001.
DOI : 10.1051/vetres:2001126
URL : https://hal.archives-ouvertes.fr/hal-00902702

C. Chiu, H. Chen, L. Kao, C. Yang, and C. Chu, Variant Salmonella genomic island 1 antibiotic resistance gene clusters in Salmonella enterica serovar Derby isolates from humans in Taiwan, Journal of Antimicrobial Chemotherapy, vol.59, issue.2, pp.325-326, 2007.
DOI : 10.1093/jac/dkl475

A. Cloeckaert, K. Praud, B. Doublet, M. Demartin, and F. Weill, Variant Salmonella 379 genomic island 1-L antibiotic resistance gene cluster in Salmonella enterica serovar 380, 2006.

B. Doublet, R. Lailler, D. Meunier, A. Brisabois, and D. Boyd, Variant Salmonella 386 genomic island 1 antibiotic resistance gene cluster in Salmonella enterica serovar 387, 2003.

R. Levings, S. Partridge, S. Djordjevic, and R. Hall, SGI1-K, a variant of the SGI1 389 genomic island carrying a mercury resistance region, Salmonella enterica serovar 390, 2007.

R. Levings, D. Lightfoot, S. Partridge, R. Hall, and S. Djordjevic, The genomic 392 island SGI1, containing the multiple antibiotic resistance region of Salmonella enterica 393, 2005.

D. Meunier, D. Boyd, M. Mulvey, S. Baucheron, and C. Mammina, Salmonella 396 enterica serotype Typhimurium DT 104 antibiotic resistance genomic island I in 397, 2002.

B. Doublet, D. Boyd, M. Mulvey, and A. Cloeckaert, The Salmonella genomic island 1, 2005.
URL : https://hal.archives-ouvertes.fr/hal-01413543

M. Rasmussen, S. Carlson, S. Franklin, Z. Mccuddin, and M. Wu, Exposure to Rumen Protozoa Leads to Enhancement of Pathogenicity of and Invasion by Multiple-Antibiotic-Resistant Salmonella enterica Bearing SGI1, Infection and Immunity, vol.73, issue.8, pp.4668-4675, 2005.
DOI : 10.1128/IAI.73.8.4668-4675.2005

Y. Anriany, R. Weiner, J. Johnson, D. Rezende, C. Joseph et al., Salmonella 406 enterica serovar Typhimurium DT104 displays a rugose phenotype, Appl Environ, p.407, 2001.

C. De-rezende, Y. Anriany, L. Carr, S. Joseph, and R. Weiner, Capsular 409 polysaccharide surrounds smooth and rugose types of Salmonella enterica serovar 410, 2005.

G. Golding, A. Olson, B. Doublet, A. Cloeckaert, and S. Christianson, The effect of the Salmonella genomic island 1 on in vitro global gene expression in Salmonella enterica serovar Typhimurium LT2, Microbes and Infection, vol.9, issue.1, pp.21-27, 2007.
DOI : 10.1016/j.micinf.2006.10.004

M. Malcova, H. Hradecka, R. Karpiskova, and I. Rychlik, Biofilm formation in field strains of Salmonella enterica serovar Typhimurium: Identification of a new colony morphology type and the role of SGI1 in biofilm formation, Veterinary Microbiology, vol.129, issue.3-4, pp.360-417, 2008.
DOI : 10.1016/j.vetmic.2007.12.006

B. Doublet, G. Golding, M. Mulvey, and A. Cloeckaert, Secondary Chromosomal Attachment Site and Tandem Integration of the Mobilizable Salmonella Genomic Island 1, PLoS ONE, vol.97, issue.4, pp.2060-421, 2008.
DOI : 10.1371/journal.pone.0002060.t003

U. Romling, W. Sierralta, K. Eriksson, and S. Normark, Multicellular and aggregative behaviour of Salmonella typhimurium strains is controlled by mutations in the agfD promoter, Molecular Microbiology, vol.273, issue.2, pp.249-264, 1998.
DOI : 10.1016/0168-6445(93)90011-W

X. Zogaj, M. Nimtz, M. Rohde, W. Bokranz, and U. Romling, The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix, Molecular Microbiology, vol.32, issue.6, pp.1452-1463, 2001.
DOI : 10.1093/glycob/9.1.31

U. Gerstel and U. Romling, The csgD promoter, a control unit for biofilm formation in 434, 2003.

A. White, D. Gibson, S. Collinson, P. Banser, and W. Kay, Extracellular Polysaccharides Associated with Thin Aggregative Fimbriae of Salmonella enterica Serovar Enteritidis, Journal of Bacteriology, vol.185, issue.18, pp.5398-5407, 2003.
DOI : 10.1128/JB.185.18.5398-5407.2003

M. Wu, S. Carlson, and D. Meyerholz, Cytopathic effects observed upon expression 439 of a repressed collagenase gene present in Salmonella and related pathogens: mimicry 440 of a cytotoxin from multiple antibiotic-resistant Salmonella enterica serotype 441, 2002.

J. Majtan, L. Majtanova, M. Xu, and V. Majtan, In vitro effect of subinhibitory concentrations of antibiotics on biofilm formation by clinical strains of Salmonella enterica serovar Typhimurium isolated in Slovakia, Journal of Applied Microbiology, vol.41, issue.5, pp.1294-1301, 2008.
DOI : 10.1128/IAI.71.7.4151-4158.2003