100 6.2.5 Inférence de la classe de patient : classification ,
106 6.3.5 Classification à l'aide de machines à support vectoriel et bayésien naïf ,
Information theory and an extension of the maximum likelihood principle, pp.267-281, 1973. ,
A new look at the statistical model identification, IEEE Transactions on Automatic Control, vol.19, issue.6, pp.716-723, 1974. ,
DOI : 10.1109/TAC.1974.1100705
Average Risks of Breast and Ovarian Cancer Associated with BRCA1 or BRCA2 Mutations Detected in Case Series Unselected for Family History: A Combined Analysis of 22 Studies, The American Journal of Human Genetics, vol.72, issue.5, pp.721117-721147, 2003. ,
DOI : 10.1086/375033
Les causes médicales de décès en france en, pp.308-314, 1980. ,
Controlling the false discovery rate : A practical and powerful approach to multiple testing, Journal of the Royal Statistical Society. Series B (Methodological), vol.57, issue.1, pp.289-300, 1995. ,
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias, Bioinformatics, vol.19, issue.2, pp.185-93, 2003. ,
DOI : 10.1093/bioinformatics/19.2.185
Histoire naturelle, générale et particulière, 1749. ,
Mutual information relevance networks : functional genomic clustering using pairwise entropy measurements, Pacific Symposium on Biocomputing Pacific Symposium on Biocomputing, pp.418-447, 2000. ,
Selective Control of the Apoptosis Signaling Network in Heterogeneous Cell Populations, PLoS ONE, vol.11, issue.9, p.547, 2007. ,
DOI : 10.1371/journal.pone.0000547.t002
A Gene Expression Signature that Can Predict the Recurrence of Tamoxifen-Treated Primary Breast Cancer, Clinical Cancer Research, vol.14, issue.6, pp.1744-1752, 2008. ,
DOI : 10.1158/1078-0432.CCR-07-1833
URL : https://hal.archives-ouvertes.fr/inserm-00267736
Learning belief networks from data, Proceedings of the sixth international conference on Information and knowledge management , CIKM '97, 1997. ,
DOI : 10.1145/266714.266920
A transformational characterization of equivalent bayesian network structures, UAI'95, pp.87-98, 1995. ,
Learning equivalence classes of bayesian-network structures, The Journal of Machine Learning Research, vol.2, 2002. ,
A Bayesian method for the induction of probabilistic networks from data, Machine Learning, pp.309-347, 1992. ,
DOI : 10.1007/BF00994110
Hepatitis c virus infection protein network, Mol Syst Biol, vol.4, p.230, 2008. ,
URL : https://hal.archives-ouvertes.fr/pasteur-00456466
Modeling and simulation of genetic regulatory systems : a literature review, J Comput Biol, vol.9, issue.1, pp.67-103, 2002. ,
A novel scalable and data efficient feature subset selection algorithm, Machine Learning and Knowledge Discovery in Databases, pp.1-15, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00383839
A novel Markov boundary based feature subset selection algorithm, Neurocomputing, vol.73, issue.4-6, pp.4-6578, 2010. ,
DOI : 10.1016/j.neucom.2009.05.018
URL : https://hal.archives-ouvertes.fr/hal-00383776
A model for reasoning about persistence and causation Planning and control, Computational Intelligence, 1989. ,
CO-INERTIA ANALYSIS AND THE LINKING OF ECOLOGICAL DATA TABLES, Ecology, vol.84, issue.11, pp.3078-3089, 2003. ,
DOI : 10.1046/j.1365-2427.2000.00523.x
A Feature Selection Newton Method for Support Vector Machine Classification, Computational Optimization and Applications, vol.28, issue.2, pp.185-202, 2004. ,
DOI : 10.1023/B:COAP.0000026884.66338.df
Causal Inference, Erkenntnis, vol.35, issue.1, pp.151-189, 1991. ,
DOI : 10.1007/978-94-011-3490-3_9
Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring, Science, vol.286, issue.5439, pp.286531-537, 1999. ,
DOI : 10.1126/science.286.5439.531
Feature extraction : Foundations and applications, 2006. ,
DOI : 10.1007/978-3-540-35488-8
The WEKA data mining software, ACM SIGKDD Explorations Newsletter, vol.11, issue.1, 2009. ,
DOI : 10.1145/1656274.1656278
The Hallmarks of Cancer, Cell, vol.100, issue.1, pp.57-70, 2000. ,
DOI : 10.1016/S0092-8674(00)81683-9
Classification with reject option in gene expression data, Bioinformatics, vol.24, issue.17, pp.241889-95, 2008. ,
DOI : 10.1093/bioinformatics/btn349
Monte Carlo sampling methods using Markov chains and their applications, Biometrika, vol.57, issue.1, pp.97-109, 1970. ,
DOI : 10.1093/biomet/57.1.97
On the Reliable Identification of Plant Sequences Containing a Polyadenylation Site, Journal of Computational Biology, vol.14, issue.9, pp.1229-1245, 2007. ,
DOI : 10.1089/cmb.2007.0058
Bayesian networks for data mining, Data Mining and Knowledge Discovery, vol.1, issue.1, pp.79-119, 1997. ,
DOI : 10.1023/A:1009730122752
A tutorial on learning with bayesian networks, pp.301-354, 1998. ,
Learning bayesian networks : The combination of knowledge and statistical data, Machine Learning, pp.197-243, 1995. ,
Performance of feature-selection methods in the classification of high-dimension data, Pattern Recognition, vol.42, issue.3, pp.42409-424, 2009. ,
DOI : 10.1016/j.patcog.2008.08.001
Summaries of Affymetrix GeneChip probe level data, Nucleic Acids Research, vol.31, issue.4, p.15, 2003. ,
DOI : 10.1093/nar/gng015
Sélection de variables par les machines à vescteurs de supports pour la discrimination binaire et multiclasse en grande dimension, Thèse de doctorat, 2007. ,
Automatic Machine Methods of Testing PERT Networks for Consistency, 1961. ,
An introduction to bayesian networks, 1996. ,
Bayesian networks and decision graphs, p.447, 2007. ,
Homeostasis and Differentiation in Random Genetic Control Networks, Nature, vol.217, issue.5215, pp.177-185, 1969. ,
DOI : 10.1038/224177a0
CAIM discretization algorithm, IEEE Transactions on Knowledge and Data Engineering, vol.16, issue.2, pp.145-153, 2004. ,
DOI : 10.1109/TKDE.2004.1269594
Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction, Science, vol.257, issue.5072, pp.257967-71, 1992. ,
DOI : 10.1126/science.1354393
Penalized feature selection and classification in bioinformatics, Brief Bioinformatics, vol.9, issue.5, pp.392-403, 2008. ,
A new method for sequencing DNA., Proceedings of the National Academy of Sciences, vol.74, issue.2, pp.560-564, 1977. ,
DOI : 10.1073/pnas.74.2.560
Equation of state calculations by fast computing machines. The journal of chemical physics, p.1087, 1953. ,
A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1, Science, vol.266, issue.5182, pp.26666-71, 1994. ,
DOI : 10.1126/science.7545954
The bayes net toolbox for matlab, Computing Science and Statistics, vol.33, 2001. ,
The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing, Science, vol.320, issue.5881, pp.3201344-3201353, 2008. ,
DOI : 10.1126/science.1158441
Evaluating Feature Selection for SVMs in High Dimensions, 2006. ,
DOI : 10.1007/11871842_72
Consistent feature selection for pattern recognition in polynomial time, The Journal of Machine Learning Research, vol.8, p.612, 2007. ,
The znf217 gene amplified in breast cancers promotes immortalization of human mammary epithelial cells, Cancer Res, issue.4, pp.611250-611254, 2001. ,
KEGG: Kyoto Encyclopedia of Genes and Genomes, Nucleic Acids Research, vol.27, issue.1, pp.29-34, 1999. ,
DOI : 10.1093/nar/27.1.29
Probabilistic reasoning in intelligent systems : Networks of plausible inference Application of bayesian networks for inferring cause?effect relations from gene expression profiles of cancer versus normal cells, Mathematical Biosciences, vol.209, issue.2, pp.528-546, 1988. ,
Variable selection using svm based criteria, Journal of Machine Learning Research, vol.3, pp.1357-1370, 2003. ,
Genome-Wide Location and Function of DNA Binding Proteins, Science, vol.290, issue.5500, pp.2902306-2902315, 2000. ,
DOI : 10.1126/science.290.5500.2306
Counting labeled acyclic digraphs Counting unlabeled acyclic digraphs, pp.28-43, 1973. ,
DOI : 10.1007/bfb0069178
Application of petri net based analysis techniques to signal transduction pathways, BMC Bioinformatics, vol.7, issue.1, p.482, 2006. ,
DOI : 10.1186/1471-2105-7-482
Robust Feature Selection Using Ensemble Feature Selection Techniques, Proceedings of the European conference on Machine Learning and Knowledge Discovery in Databases-Part II, pp.313-325, 2008. ,
DOI : 10.1007/978-3-540-87481-2_21
DNA sequencing with chain-terminating inhibitors, Proceedings of the National Academy of Sciences, vol.74, issue.12, pp.745463-5467, 1977. ,
DOI : 10.1073/pnas.74.12.5463
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC431765
A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics, Statistical applications in genetics and molecular biology, p.32, 2005. ,
DOI : 10.2202/1544-6115.1175
Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray, Science, vol.270, issue.5235, pp.270467-70, 1995. ,
DOI : 10.1126/science.270.5235.467
Estimating the dimension of a model. The annals of statistics, pp.461-464, 1978. ,
An improved Bonferroni procedure for multiple tests of significance, Biometrika, vol.73, issue.3, pp.751-754, 1986. ,
DOI : 10.1093/biomet/73.3.751
Computational Inference of Neural Information Flow Networks, PLoS Computational Biology, vol.395, issue.11, p.161, 2006. ,
DOI : 10.1371/journal.pcbi.0020161.sv001
Statistical Issues in cDNA Microarray Data Analysis, Methods Mol Biol, vol.224, pp.111-147, 2003. ,
DOI : 10.1385/1-59259-364-X:111
Causation, prediction, and search, 2000. ,
DOI : 10.1007/978-1-4612-2748-9
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification, BMC Bioinformatics, vol.9, issue.1, p.319, 2008. ,
DOI : 10.1186/1471-2105-9-319
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection, Bioinformatics, vol.19, issue.Suppl 2, pp.19227-236, 2003. ,
DOI : 10.1093/bioinformatics/btg1082
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/19/suppl_2/ii227
Development of Two-Stage SVM-RFE Gene Selection Strategy for Microarray Expression Data Analysis, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.4, issue.3, 2007. ,
DOI : 10.1109/TCBB.2007.70224
Boolean formalization of genetic control circuits, Journal of Theoretical Biology, vol.42, issue.3, pp.563-585, 1973. ,
DOI : 10.1016/0022-5193(73)90247-6
Diagnosis of multiple cancer types by shrunken centroids of gene expression, Proceedings of the National Academy of Sciences, vol.99, issue.10, pp.996567-72, 2002. ,
DOI : 10.1073/pnas.082099299
Sélection de variables pour la discrimination en grande dimension et classification de données fonctionnelles, Thèse de doctorat, 2005. ,
Gene expression profiling predicts clinical outcome of breast cancer, Nature, issue.6871, pp.415530-415536, 2002. ,
Serial Analysis of Gene Expression, Science, vol.270, issue.5235, pp.270484-270491, 1995. ,
DOI : 10.1126/science.270.5235.484
Equivalence and synthesis of causal models, Proceedings 6th Conference on Uncertainty in AI, pp.220-227, 1990. ,
A theory of inferred causation, 1991. ,
Molecular structure of nucleic acids ; a structure for deoxyribose nucleic acid, Nature, issue.4356, pp.171737-171745, 1953. ,
Use of the zero-norm with linear models and kernel methods, The Journal of Machine Learning Research, vol.3, pp.1439-1461, 2003. ,