M. Ruiz-rodríguez, F. S. Lucas, P. Heeb, and J. J. Soler, Differences in intestinal microbiota between avian brood parasites and their hosts, Biological Journal of the Linnean Society, vol.96, issue.2, pp.406-414, 2009.
DOI : 10.1111/j.1095-8312.2008.01127.x

M. Ruiz-rodríguez, J. J. Soler, and F. S. Lucas, nestlings, Journal of Avian Biology, vol.80, issue.1, pp.42-48, 2009.
DOI : 10.1111/j.1600-048X.2008.04471.x

C. M. Perrins, British tits, 1979.

N. Nour, D. Currie, and E. Matthysen, Effects of habitat fragmentation on provisioning rates, diet and breeding success in two species of tit (great tit and blue tit), Oecologia, vol.114, issue.4, pp.522-530, 1998.
DOI : 10.1007/s004420050476

M. Soler, J. G. Martínez, J. J. Soler, and A. P. Møller, Preferential allocation of food by magpies Pica pica to great spotted cuckoo Clamator glandarius chicks, Behavioral Ecology and Sociobiology, vol.37, issue.1, pp.7-13, 1995.
DOI : 10.1007/BF00173893

F. S. Lucas and P. Heeb, nestlings, Journal of Avian Biology, vol.13, issue.6, pp.510-516, 2005.
DOI : 10.1111/j.0908-8857.2005.03479.x
URL : https://hal.archives-ouvertes.fr/hal-00103451

P. Langer, The digestive tract and life history of small mammals, Mammal Review, vol.113, issue.2, pp.107-131, 2002.
DOI : 10.1086/303383

M. Leibold, Resource Edibility and the Effects of Predators and Productivity on the Outcome of Trophic Interactions, The American Naturalist, vol.134, issue.6, pp.922-949, 1989.
DOI : 10.1086/285022

M. T. Brett and C. R. Goldman, A meta-analysis of the freshwater trophic cascade., Proceedings of the National Academy of Sciences, vol.93, issue.15, pp.7723-7726, 1996.
DOI : 10.1073/pnas.93.15.7723

E. Jeppesen, M. Sondergaard, and M. Sondergaard, Archiv für Hydrobiologie, 10 Ward B.B. Microb Ecol. 11 Strong D.R. Ecology, vol.153, issue.73, pp.533-555, 1992.

L. Persson, Trophic Cascades: Abiding Heterogeneity and the Trophic Level Concept at the End of the Road, Oikos, vol.85, issue.3, pp.385-397, 1999.
DOI : 10.2307/3546688

K. Jurgens, Marine Microbial Food Webs, pp.27-37, 1994.

E. Zöllner, B. Santer, and M. Boersma, Cascading predation effects of Daphnia and copepods on microbial food web components, Freshwater Biology, vol.129, issue.12, pp.2174-2193, 2003.
DOI : 10.1046/j.1365-2427.2002.00780.x

E. Zöllner, H. G. Hoppe, and S. U. , Effect of zooplankton-mediated trophic cascades on marine microbial food web components (bacteria, nanoflagellates, ciliates), Limnology and Oceanography, vol.54, issue.1, pp.262-275, 2009.
DOI : 10.4319/lo.2009.54.1.0262

S. A. Wickham, on a freshwater microbial food web, Journal of Plankton Research, vol.20, issue.4, pp.739-755, 1998.
DOI : 10.1093/plankt/20.4.739

A. Calbet and M. R. Landry, Mesozooplankton influences on the microbial food web: Direct and indirect trophic interactions in the oligotrophic open ocean, Limnology and Oceanography, vol.44, issue.6, pp.1370-1380, 1999.
DOI : 10.4319/lo.1999.44.6.1370

J. Sipura, E. Lores, and R. A. Snyder, Effect of copepods on estuarine microbial plankton in short-term microcosms, Aquatic Microbial Ecology, vol.33, pp.181-190, 2003.
DOI : 10.3354/ame033181

E. F. Møller, P. Thor, and T. G. Nielsen, Production of DOC by Calanus finmarchicus, C. glacialis and C. hyperboreus through sloppy feeding and leakage from fecal pellets, Marine Ecology Progress Series, vol.262, pp.185-191
DOI : 10.3354/meps262185

K. D. Mcmahon, G. Martin, H. Hugenholtz, and P. , Integrating ecology into biotechnology, Current Opinion in Biotechnology, vol.18, issue.3, pp.287-292, 2007.
DOI : 10.1016/j.copbio.2007.04.007

N. Boon, L. De-gelder, H. Lievens, and W. Verstraete, Bioaugmenting Bioreactors for the Continuous Removal of 3-Chloroaniline by a Slow Release Approach, Environmental Science & Technology, vol.36, issue.21, pp.4698-4704, 2002.
DOI : 10.1021/es020076q

K. Watanabe, M. Teramoto, and S. Harayama, Stable augmentation of activated sludge with foreign catabolic genes harboured by an indigenous dominant bacterium, Environmental Microbiology, vol.65, issue.10, pp.577-583, 2002.
DOI : 10.1007/s002530000424

A. Maes, H. Van-raemdonck, and K. Smith, Strain DCA1 during Bioaugmentation of 1,2-DCA-Contaminated Groundwater, Environmental Science & Technology, vol.40, issue.17, pp.5544-5552, 2006.
DOI : 10.1021/es060953i

W. Verstraete, Microbial ecology and environmental biotechnology, The ISME Journal, vol.70, issue.1, pp.4-8, 2007.
DOI : 10.1038/ismej.2007.7

J. F. Salles, F. Poly, B. Shmid, L. Roux, and X. , Community niche predicts the functioning of denitrifying bacterial assemblages, Ecology, vol.90, issue.12, pp.3324-3332, 2009.
DOI : 10.1890/03-3050
URL : https://hal.archives-ouvertes.fr/halsde-00525103

M. A. Leibold and M. A. Mcpeek, COEXISTENCE OF THE NICHE AND NEUTRAL PERSPECTIVES IN COMMUNITY ECOLOGY, Ecology, vol.87, issue.6, pp.1399-1410, 1995.
DOI : 10.1038/nature03211

M. Danger, T. Daufresne, F. Lucas, S. Pissard, and G. Lacroix, Does Liebig's law of the minimum scale up from species to communities?, Oikos, vol.96, issue.11, pp.1741-51, 2008.
DOI : 10.1111/j.1600-0706.2008.16793.x

E. P. Odum, Fundamentals of Ecology., Bulletin of the Torrey Botanical Club, vol.82, issue.5, 1959.
DOI : 10.2307/2482488

I. J. Falkinham, S. Pedley, J. Bartram, and G. Rees, In : Pathogenic mycobacteria in water : a guide to public health consequences, monitoring and management, World Health Organization, pp.26-38, 2004.

I. J. Nichols, G. Bartram, and J. , In : Pathogenic mycobacteria in water : a guide to public health consequences, monitoring and management, World Health Organization, pp.15-23, 2004.

M. J. Vaerewijck, G. Huys, and J. C. Palomino, Mycobacteria in drinking water distribution systems: ecology and significance for human health, FEMS Microbiology Reviews, vol.29, issue.5, pp.911-934, 2005.
DOI : 10.1016/j.femsre.2005.02.001

J. B. Wallace, S. L. Eggert, J. L. Meyer, and J. R. Webster, Multiple Trophic Levels of a Forest Stream Linked to Terrestrial Litter Inputs, Science, vol.277, issue.5322, pp.102-104, 1997.
DOI : 10.1126/science.277.5322.102

. Faculté-de-sciences and P. Et-technologie, Soutien à la Recherche, insertion nouveau MCF. Financement de 6000 Euros 2006-2009 -Ville de Paris : co-requérante du projet : Nouveau procédé biologique de traitements des graisses en milieu urbain attribué à L. Moulin (Eau de Paris)

J. M. Directeur, Financement 18000 euros/an pour le thème Sources de mycobactéries non-tuberculeuses dans le bassin versant de la Seine

N. Radomski, F. S. Lucas, R. Moilleron, E. Cambau, S. Haenn et al., Development of a Real-Time qPCR Method for Detection and Enumeration of Mycobacterium spp. in Surface Water, Applied and Environmental Microbiology, vol.76, issue.21, pp.7348-7351, 2010.
DOI : 10.1128/AEM.00942-10
URL : https://hal.archives-ouvertes.fr/hal-00676401

C. J. Schubert, F. S. Lucas, E. Durisch-kaiser, R. Stierli, T. Diem et al., Oxidation and emission of methane in a monomictic lake (Rotsee, Switzerland), Aquatic Sciences, vol.65, issue.6, pp.455-466, 2010.
DOI : 10.1007/s00027-010-0148-5
URL : https://hal.archives-ouvertes.fr/hal-00676520

N. Radomski, E. Cambau, L. Moulin, S. Haenn, R. Moilleron et al., Comparison of Culture Methods for Isolation of Nontuberculous Mycobacteria from Surface Waters, Applied and Environmental Microbiology, vol.76, issue.11, pp.3514-3520, 2010.
DOI : 10.1128/AEM.02659-09
URL : https://hal.archives-ouvertes.fr/hal-00676404

M. Ruiz-rodríguez, F. S. Lucas, P. Heeb, and J. J. Soler, Differences in intestinal microbiota between avian brood parasites and their hosts, Biological Journal of the Linnean Society, vol.96, issue.2, pp.406-414, 2009.
DOI : 10.1111/j.1095-8312.2008.01127.x

M. Ruiz-rodríguez, J. J. Soler, F. S. Lucas, P. Heeb, M. J. Palacios et al., nestlings, Journal of Avian Biology, vol.80, issue.1, pp.42-48, 2009.
DOI : 10.1111/j.1600-048X.2008.04471.x

M. Danger, L. F. Daufresnet, S. Pissard, and G. Lacroix, Does Liebig's law of the minimum scale up from species to communities? Oikos, pp.1741-51, 2008.

L. Giongo, J. Lucas, F. S. Casarin, F. Heeb, P. Brandelli et al., Keratinolytic proteases of Bacillus species isolated from the Amazon basin showing remarkable de-hairing activity, World Journal of Microbiology and Biotechnology, vol.70, issue.72, pp.375-382, 2007.
DOI : 10.1007/s11274-006-9234-1

S. Regnaut, F. Lucas, and L. Fumagalli, DNA degradation in avian faecal samples and feasibility of non-invasive genetic studies of threatened capercaillie populations, Conservation Genetics, vol.2, issue.3, pp.449-453, 2006.
DOI : 10.1007/s10592-005-9023-7
URL : https://hal.archives-ouvertes.fr/hal-00943418

F. Lucas and P. Heeb, nestlings, Journal of Avian Biology, vol.13, issue.6, pp.510-516, 2005.
DOI : 10.1111/j.0908-8857.2005.03479.x
URL : https://hal.archives-ouvertes.fr/hal-00103451

F. Lucas, B. Moureau, V. Jourdie, and P. Heeb, Brood size modifications affect plumage bacterial assemblages of European starlings, Molecular Ecology, vol.25, issue.319, pp.639-646, 2005.
DOI : 10.1111/j.1365-294X.2005.02436.x
URL : https://hal.archives-ouvertes.fr/hal-00814496

R. C. Thys, F. Lucas, A. Riffel, P. Heeb, and A. Brandelli, Characterization of a protease of a feather-degrading Microbacterium species, Letters in Applied Microbiology, vol.70, issue.2, pp.181-186, 2004.
DOI : 10.1046/j.1365-2672.2000.01173.x
URL : https://hal.archives-ouvertes.fr/hal-00814497

F. Lucas, G. Bertru, and M. G. Höfle, Characterization of free-living and attached bacteria in sediments colonized by Hediste diversicolor, Aquatic Microbial Ecology, vol.32, pp.165-174, 2003.
DOI : 10.3354/ame032165

F. Lucas, O. Broennimann, I. Febbraro, and P. Heeb, High Diversity among Feather-Degrading Bacteria from a Dry Meadow Soil, Microbial Ecology, vol.45, issue.3, pp.282-290, 2003.
DOI : 10.1007/s00248-002-2032-x
URL : https://hal.archives-ouvertes.fr/hal-00814501

A. Riffel, F. Lucas, P. Heeb, and A. Brandelli, Characterization of a new keratinolytic bacterium that completely degrades native feather keratin, Archives of Microbiology, vol.31, issue.4, pp.258-265, 2003.
DOI : 10.1002/(SICI)1097-4636(199608)31:4<439::AID-JBM1>3.0.CO;2-M
URL : https://hal.archives-ouvertes.fr/hal-00814498

S. Hoeft, F. Lucas, J. Hollibaugh, and R. Oremland, Characterization of Microbial Arsenate Reduction in the Anoxic Bottom Waters of Mono Lake, California, Geomicrobiology Journal, vol.173, issue.1, pp.23-40, 2002.
DOI : 10.1080/014904502317246147

F. Lucas and J. Hollibaugh, Response of Sediment Bacterial Assemblages To Selenate and Acetate Amendments, Environmental Science & Technology, vol.35, issue.3, pp.528-534, 2001.
DOI : 10.1021/es001492i
URL : https://hal.archives-ouvertes.fr/hal-00814514

V. Créach, F. Lucas, C. Deleu, J. Minet, G. Bertru et al., Combination of biomolecular and stable isotope techniques to determine the origin of organic matter used by bacterial communities: application to sediment, Journal of Microbiological Methods, vol.38, issue.1-2, pp.43-52, 1999.
DOI : 10.1016/S0167-7012(99)00076-7

F. Lucas and G. Bertru, Bacteriolysis in the gut of Nereis diversicolor (O.F. M??ller) and effect of the diet, Journal of Experimental Marine Biology and Ecology, vol.215, issue.2, pp.235-245, 1997.
DOI : 10.1016/S0022-0981(97)00051-8

F. Lucas, T. Meziane, G. Bertru, and C. Retière, Bactéries du sédiment: extraction et distribution sur un estran (Baie du Mont St Michel), C.R.A.S. Serie III, vol.319, pp.537-579, 1996.

N. Radomski, R. Moilleron, F. S. Lucas, and I. J. Falkinham, (in press) Challenges in Environmental Monitoring of Pathogens: Case Study in Mycobacterium avium. in: Current Research Technology and Education Topics in Applied Microbiology and Microbial Biotechnology, Microbiology book Series, 2. Ed. A. Méndez-Vilas

C. Schubert, . Diem, and F. Lucas, Methane emission from a Swiss lake: A full year cycle, 19th Annual VM Goldschmidt Conference, pp.1185-1185, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00822031

C. J. Schubert, F. S. Lucas, E. Durisch-kaiser, T. Diem, and B. Mueller, Aerobic and anaerobic methane oxidation in Lake Rotsee, 12th International Symposium on Water- Rock Interaction Kunming, Rep. of China. Water-Rock interaction, vols 1 et 2, Proceedings, pp.891-894, 2007.

N. Fromin, J. Hamelin, and F. Lucas, Swiss microbial ecology : dynamism and challenges. Pipette-Swiss laboratory medicine, pp.16-17, 2005.

F. Lucas, V. Créach, and M. Bessieres, Aquatic Microbial Ecology, International Biology, vol.34, pp.19-21, 1997.