J. Implémentation-en, Le package est distribué avec les sources et une documentation sous licence libre CECIL. Il est composé d'environ 170 classes et 18000 lignes de code. Il peutêtre peutêtre employé soit sous la forme d'une bibliothèque Java, soit sous la forme d'un programme exécutable (dénommé Isof un) muni d'options de réglage. On trouvera ci-après deux tableaux

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]. A. Ber01 and . Bergeron, A very elementary presentation of the hannenhallipevzner theory, CPM : 12th Symposium on Combinatorial Pattern Matching, volume 2089 de Lecture Notes in Computer Science, pp.106-117, 2001.

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[. Denielou, F. Boyer, A. Viari, and M. Sagot, Multiple Alignment of Biological Networks: A Flexible Approach, CPM : 20th Symposium on Combinatorial Pattern Matching, pp.263-273, 2009.
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M. Kanehisa and S. Goto, KEGG: Kyoto Encyclopedia of Genes and Genomes, Nucleic Acids Research, vol.28, issue.1, pp.27-30, 2000.
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]. Y. Ldrdgr08, D. Li, M. J. De-ridder, M. J. De-groot, and . Reinders, Metabolic pathway alignment (M-pal) reveals diversity and alternatives in conserved networks, Proceedings of the 6th Asia-Pacific Bioinformatics Conference de Advances in Bioinformatics and Computational Biology, pp.273-286, 2008.

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. Vss-+-02-]-k, Y. Vandepoele, C. Saeys, J. Simillion, and Y. Raes, Van De Peer : The automatic detection of homologous regions (adhore) and its application to microcolinearity between arabidopsis and rice, Genome Res, vol.12, issue.11, pp.1792-1801, 2002.

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