Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets, Journal of Structural and Functional Genomics, vol.4, issue.2/3, pp.141-157, 2003. ,
DOI : 10.1023/A:1026177202925
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997. ,
DOI : 10.1093/nar/25.17.3389
Unexpected Binding Mode of a Cyclic Sulfamide HIV-1 Protease Inhibitor, Journal of Medicinal Chemistry, vol.40, issue.6, pp.898-902, 1997. ,
DOI : 10.1021/jm960588d
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential, Folding and Design, vol.2, issue.3, pp.173-181, 1997. ,
DOI : 10.1016/S1359-0278(97)00024-2
Dynamical study of a tropical cut-off low over South Africa, and its impact on tropospheric ozone, Atmospheric Environment, vol.37, issue.11, pp.1475-1488, 2003. ,
DOI : 10.1016/S1352-2310(02)00999-8
URL : https://hal.archives-ouvertes.fr/hal-00136961
International Global Atmospheric Chemistry (IGAC) Project's First Aerosol Characterization Experiment (ACE 1): Overview, Journal of Geophysical Research: Atmospheres, vol.101, issue.D13, pp.16297-16318, 1998. ,
DOI : 10.1029/97JD03741
Adaptation of a cloud activation scheme to a spectral-chemical aerosol model, Atmospheric Research, vol.41, issue.3-4, pp.267-279, 1996. ,
DOI : 10.1016/0169-8095(96)00014-2
The Protein Data Bank, Nucleic Acids Research, vol.28, issue.1, pp.235-242, 2000. ,
DOI : 10.1093/nar/28.1.235
The Advantage of Functional Prediction Based on Clustering of Yeast Genes and Its Correlation with Non-Sequence Based Classifications, Journal of Computational Biology, vol.9, issue.2, pp.193-210, 2002. ,
DOI : 10.1089/10665270252935412
Experimental Verification of Conformational Variation of Human Fatty Acid Synthase as Predicted by Normal Mode Analysis, Structure, vol.12, issue.2, pp.185-191, 2004. ,
DOI : 10.1016/j.str.2004.01.015
Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor., Proceedings of the National Academy of Sciences, vol.80, issue.21, pp.6571-6575, 1983. ,
DOI : 10.1073/pnas.80.21.6571
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination, Acta Crystallographica Section D Biological Crystallography, vol.54, issue.5, pp.54-905, 1998. ,
DOI : 10.1107/S0907444998003254
Structure of the E2 DNA-Binding Domain from Human Papillomavirus Serotype 31 at 2.4?????, Acta Crystallographica Section D Biological Crystallography, vol.54, issue.6, pp.1367-1376, 1998. ,
DOI : 10.1107/S0907444998005587
Structural and Genomic Correlates of Hyperthermostability, Journal of Biological Chemistry, vol.275, issue.42, pp.32383-32386, 2000. ,
DOI : 10.1074/jbc.C000497200
Atlantic subtropical potential vorticity barrier as seen by Measurements of Ozone by Airbus In-Service Aircraft (MOZAIC) flights, Journal of Geophysical Research: Atmospheres, vol.355, issue.D19, pp.25681-25693, 1998. ,
DOI : 10.1029/98JD01883
Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate, Nature, vol.326, issue.6114, pp.655-661, 1987. ,
DOI : 10.1038/326655a0
The Transcriptional Program of Sporulation in Budding Yeast, Science, vol.282, issue.5389, pp.699-705, 1998. ,
DOI : 10.1126/science.282.5389.699
CaspR: a web server for automated molecular replacement using homology modelling, Nucleic Acids Research, vol.32, issue.Web Server, pp.606-609, 2004. ,
DOI : 10.1093/nar/gkh400
On the parameterization of activation spectra from cloud condensation nuclei microphysical properties, Journal of Geophysical Research: Atmospheres, vol.49, issue.D9, pp.11753-11766, 2000. ,
DOI : 10.1029/1999JD901195
Development of a reduced chemical scheme for use in mesoscale meteorological models, Atmospheric Environment, vol.34, issue.16, pp.2633-2644, 2000. ,
DOI : 10.1016/S1352-2310(99)00480-X
Simplified Normal Mode Analysis of Conformational Transitions in DNA-dependent Polymerases: the Elastic Network Model, Journal of Molecular Biology, vol.320, issue.5, pp.1011-1024, 2002. ,
DOI : 10.1016/S0022-2836(02)00562-4
On the use of normal modes in thermal parameter refinement: theory and application to the bovine pancreatic trypsin inhibitor, Acta Crystallographica Section A Foundations of Crystallography, vol.46, issue.6, pp.425-435, 1990. ,
DOI : 10.1107/S0108767390002082
A new approach for determining low-frequency normal modes in macromolecules, Biopolymers, vol.81, issue.6, p.759, 1994. ,
DOI : 10.1002/bip.360340608
MolMovDB: analysis and visualization of conformational change and structural flexibility, Nucleic Acids Research, vol.31, issue.1, pp.478-482, 2003. ,
DOI : 10.1093/nar/gkg104
Annotation of bacterial genomes using improved phylogenomic profiles, Bioinformatics, vol.19, issue.Suppl 1, pp.105-107, 2003. ,
DOI : 10.1093/bioinformatics/btg1013
Phydbac (phylogenomic display of bacterial genes): an interactive resource for the annotation of bacterial genomes, Nucleic Acids Research, vol.31, issue.13, pp.3720-3722, 2003. ,
DOI : 10.1093/nar/gkg603
Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis, Nucleic Acids Research, vol.32, issue.Web Server, pp.336-339, 2004. ,
DOI : 10.1093/nar/gkh365
Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions, Genome Biol, vol.2, p.34, 2001. ,
Internal and external mixing in atmospheric aerosols by coagulation: Impact on the optical and hygroscopic properties of the sulphate-soot system, Atmospheric Environment, vol.31, issue.10, pp.1393-1402, 1997. ,
DOI : 10.1016/S1352-2310(96)00341-X
Modeller: Generation and Refinement of Homology-Based Protein Structure Models, Methods Enzymol, vol.374, pp.461-491, 2003. ,
DOI : 10.1016/S0076-6879(03)74020-8
Who's your neighbor? New computational approaches for functional genomics, Nature Biotechnology, vol.14, issue.6, pp.609-613, 2000. ,
DOI : 10.1038/76443
3D-Jury: a simple approach to improve protein structure predictions, Bioinformatics, vol.19, issue.8, pp.1015-1018, 2003. ,
DOI : 10.1093/bioinformatics/btg124
Dynamics of a small globular protein in terms of low-frequency vibrational modes., Proceedings of the National Academy of Sciences, vol.80, issue.12, pp.3696-3700, 1983. ,
DOI : 10.1073/pnas.80.12.3696
ESPript: analysis of multiple sequence alignments in PostScript, Bioinformatics, vol.15, issue.4, pp.305-308, 1999. ,
DOI : 10.1093/bioinformatics/15.4.305
URL : https://hal.archives-ouvertes.fr/hal-00314288
Analysis of domain motions by approximate normal mode calculations, Proteins: Structure, Function, and Genetics, vol.14, issue.3, pp.417-429, 1998. ,
DOI : 10.1002/(SICI)1097-0134(19981115)33:3<417::AID-PROT10>3.0.CO;2-8
Analysis of domain motions in large proteins, Proteins: Structure, Function, and Genetics, vol.257, issue.3, pp.369-382, 1999. ,
DOI : 10.1002/(SICI)1097-0134(19990215)34:3<369::AID-PROT9>3.0.CO;2-F
The Crystal Structure of Glutamine-binding Protein fromEscherichia coli, Journal of Molecular Biology, vol.262, issue.2, pp.225-242, 1996. ,
DOI : 10.1006/jmbi.1996.0509
An overview of ACE-Asia: Strategies for quantifying the relationships between Asian aerosols and their climatic impacts, Journal of Geophysical Research, vol.108, issue.D23, 2003. ,
DOI : 10.1029/2003JD003550
Observations of the evolution of the aerosol, cloud and boundary-layer characteristics during the 1st ACE-2 Lagrangian experiment, Tellus B: Chemical and Physical Meteorology, vol.10, issue.16, pp.348-374, 2000. ,
DOI : 10.3402/tellusa.v9i2.9094
Evaluating the potential of using fold-recognition models for molecular replacement, Acta Crystallographica Section D Biological Crystallography, vol.57, issue.10, pp.1428-1434, 2001. ,
DOI : 10.1107/S0907444901013403
The EcoCyc Database, Nucleic Acids Research, vol.30, issue.1, pp.56-58, 2002. ,
DOI : 10.1093/nar/30.1.56
Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium, Proceedings of the National Academy of Sciences, vol.1, issue.1, pp.14257-14262, 2000. ,
DOI : 10.1046/j.1365-2958.1999.01524.x
Normal mode refinement: crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data, 1992. ,
An elastic network model of HK97 capsid maturation, Journal of Structural Biology, vol.143, issue.2, pp.107-117, 2003. ,
DOI : 10.1016/S1047-8477(03)00126-6
Use of Non-crystallographic Symmetry in Protein Structure Refinement, Acta Crystallographica Section D Biological Crystallography, vol.52, issue.4, pp.842-857, 1996. ,
DOI : 10.1107/S0907444995016477
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, Journal of Applied Crystallography, vol.24, issue.5, pp.946-950, 1991. ,
DOI : 10.1107/S0021889891004399
Normal mode analysis of macromolecular motions in a database framework: Developing mode concentration as a useful classifying statistic, Proteins: Structure, Function, and Genetics, vol.29, issue.4, pp.682-695, 2002. ,
DOI : 10.1002/prot.10168
The Meso-NH Atmospheric Simulation System. Part I: adiabatic formulation and control simulations, Annales Geophysicae- Atmospheres Hydrospheres and Space Sciences, pp.90-109, 1998. ,
DOI : 10.1007/s00585-997-0090-6
URL : https://hal.archives-ouvertes.fr/hal-00329074
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR, Journal of Biomolecular NMR, vol.8, issue.4, pp.477-486, 1996. ,
DOI : 10.1007/BF00228148
A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca, 2002. ,
A geophysiologist's thoughts on the natural sulphur cycle, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.352, issue.1350, pp.143-147, 1997. ,
DOI : 10.1098/rstb.1997.0009
Computational genetics: finding protein function by nonhomology methods, Current Opinion in Structural Biology, vol.10, issue.3, pp.359-365, 2000. ,
DOI : 10.1016/S0959-440X(00)00097-X
A combined algorithm for genome-wide prediction of protein function, Nature, vol.402, pp.83-86, 1999. ,
Measurement of ozone and water vapor by Airbus in-service aircraft: The MOZAIC airborne program, an overview, Journal of Geophysical Research: Atmospheres, vol.16, issue.D19, pp.25631-25642, 1998. ,
DOI : 10.1029/98JD00977
(sous presse) Export of Asian pollution during two cold front episodes of the TRACE-P experiment, Journal of Geophysical Research-Atmospheres ,
Physico-chemical modeling of the First Aerosol Characterization Experiment (ACE 1) Lagrangian B: 2. DMS emission, transport and oxidation at the mesoscale, Journal of Geophysical Research: Atmospheres, vol.11, issue.D13, pp.16457-16473, 1998. ,
DOI : 10.1029/98JD01068
One-dimensional modeling of sulfur species during the First Aerosol Characterization Experiment (ACE 1) Lagrangian B, Journal of Geophysical Research: Atmospheres, vol.101, issue.D17, pp.21733-21749, 1999. ,
DOI : 10.1029/1999JD900022
Hinge-bending motion in citrate synthase arising from normal mode calculations, Proteins: Structure, Function, and Genetics, vol.112, issue.4, pp.557-560, 1995. ,
DOI : 10.1002/prot.340230410
Photodissociation and UV radiative transfer in a cloudy atmosphere: Modeling and measurements, Journal of Geophysical Research: Atmospheres, vol.21, issue.D13, pp.16665-16676, 1998. ,
DOI : 10.1029/97JD02989
Predictome: a database of putative functional links between proteins, Nucleic Acids Research, vol.30, issue.1, pp.306-309, 2002. ,
DOI : 10.1093/nar/30.1.306
DIMB: diagonalization in a mixed basis. a method to compute low-frequency normal modes for large macromolecules, Biopolymers, vol.33, pp.569-611, 1993. ,
On the fitting of model electron densities into EM reconstructions: a reciprocal-space formulation, Acta Crystallographica Section D Biological Crystallography, vol.58, issue.10, pp.1820-1825, 2002. ,
DOI : 10.1107/S0907444902013707
sous presse) Computing multiple sequence/structure alignments with the T-Coffee package, Current Protocols in Bioinformatics ,
3DCoffee: Combining Protein Sequences and Structures within Multiple Sequence Alignments, Journal of Molecular Biology, vol.340, issue.2, pp.385-395, 2004. ,
DOI : 10.1016/j.jmb.2004.04.058
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles, Proceedings of the National Academy of Sciences, vol.3, issue.3, pp.4285-4288, 1999. ,
DOI : 10.1093/nar/26.1.50
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment, Nucleic Acids Research, vol.32, issue.Web Server, pp.37-40, 2004. ,
DOI : 10.1093/nar/gkh382
The 2nd Aerosol Characterization Experiment (ACE-2): general overview and main results, Tellus B: Chemical and Physical Meteorology, vol.52, issue.52, pp.111-125, 2000. ,
DOI : 10.3402/tellusb.v52i2.16088
Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome, Genome Res, vol.13, pp.1800-1809, 2003. ,
Transconformations of the SERCA1 Ca-ATPase: A Normal Mode Study, Biophysical Journal, vol.85, issue.4, pp.2186-2197, 2003. ,
DOI : 10.1016/S0006-3495(03)74644-X
URL : https://hal.archives-ouvertes.fr/hal-00015419
CRYStallize: A crystallographic symmetry display and handling subpackage in TOM/FRODO, Journal of Molecular Graphics, vol.8, issue.2, 1990. ,
DOI : 10.1016/0263-7855(90)80087-V
The TB structural genomics consortium crystallization facility: towards automation from protein to electron density, Acta Crystallographica Section D Biological Crystallography, vol.58, issue.10, 2002. ,
DOI : 10.1107/S0907444902014282
Functional links between proteins, Nature, vol.402, issue.23, pp.25-26, 1999. ,
Evaluation of comparative protein modeling by MODELLER, Proteins: Structure, Function, and Genetics, vol.270, issue.3, pp.318-326, 1995. ,
DOI : 10.1002/prot.340230306
Comparative Protein Structure Modeling: Introduction and Practical Examples with Modeller, Methods Mol Biol, vol.143, pp.97-129, 2000. ,
DOI : 10.1385/1-59259-368-2:97
K-12 Gene Products, Microbial & Comparative Genomics, vol.5, issue.4, pp.205-222, 2000. ,
DOI : 10.1089/omi.1.2000.5.205
FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties11Edited by B. Honig, Journal of Molecular Biology, vol.310, issue.1, pp.243-257, 2001. ,
DOI : 10.1006/jmbi.2001.4762
The impact of wind shear on observed and simulated trajectories during the ACE-1, 2000. ,
Australian Meteorological Magazine, pp.109-120 ,
Set1 is required for meiotic S-phase onset, double-strand break formation and middle gene expression, The EMBO Journal, vol.23, issue.9, pp.1957-1967, 2004. ,
DOI : 10.1038/sj.emboj.7600204
Das Feld am Punkt im äußeren elektromagnetischen Feld. Diplomarbeit im Fachbereich Physik, 1991. ,
Modélisation couplée du transport et de la chimie du diméthyl de soufre dans la couche limite marine nuageuse. Impact climatique et étude de processus, Thèse de doctorat, 1994. ,
Biogenic sulfur emissions and aerosols over the tropical South Atlantic: 2. One-dimensional simulation of sulfur chemistry in the marine boundary layer, Journal of Geophysical Research, vol.90, issue.D5, pp.11323-11334, 1995. ,
DOI : 10.1029/95JD00412
Ozone-rich transients in the upper equatorial Atlantic troposphere, Nature, vol.388, issue.6643, pp.661-663, 1997. ,
DOI : 10.1038/41749
Genomic Correlates of Hyperthermostability, an Update, Journal of Biological Chemistry, vol.278, issue.19, pp.17198-17202, 2003. ,
DOI : 10.1074/jbc.M301327200
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events, Nucleic Acids Research, vol.32, issue.90001, pp.273-276, 2004. ,
DOI : 10.1093/nar/gkh053
Chemistry and aerosols in the marine boundary layer: 1-D modelling of the three ACE-2 Lagrangian experiments, Atmospheric Environment, vol.34, issue.29-30, pp.5079-5094, 2000. ,
DOI : 10.1016/S1352-2310(00)00221-1
A continental outbreak of air during the Second Aerosol Characterization Experiment (ACE 2): A Lagrangian experiment, Journal of Geophysical Research: Atmospheres, vol.104, issue.D14, pp.17911-17924, 2000. ,
DOI : 10.1029/2000JD900157
Physico-chemical modeling of the First Aerosol Characterization Experiment (ACE 1) Lagrangian B: 1. A moving column approach, Journal of Geophysical Research: Atmospheres, vol.101, issue.D13, pp.16433-16455, 1998. ,
DOI : 10.1029/98JD00821
DMS oxidation and turbulent transport in the marine boundary layer: A numerical study, Journal of Atmospheric Chemistry, vol.92, issue.4, pp.379-395, 1994. ,
DOI : 10.1007/BF00712452
Modification of a Linearized Semiimplicit Scheme for Chemical-Reactions Using a Steady-State Approximation Turbulence structure, Annales Geophysicae-Atmospheres Hydrospheres and Space Sciences Journal of Geophysical Research-Atmospheres, vol.12, issue.104, pp.359-361, 1994. ,
Characteristics of marine boundary layers during two Lagrangian measurement periods: 1. General conditions and mean characteristics, Journal of Geophysical Research: Atmospheres, vol.101, issue.D17, pp.21751-21765, 1999. ,
DOI : 10.1029/1998JD100099
Boundary layer and aerosol evolution during the 3rd Lagrangian experiment of ACE-2, Tellus B: Chemical and Physical Meteorology, vol.49, issue.13, pp.401-422, 2000. ,
DOI : 10.3402/tellusb.v52i2.16127
Electrical discharge source for tropospheric ???ozone-rich transients???, Journal of Geophysical Research-Atmospheres, 2002. ,
DOI : 10.1029/2002JD002345
Three-dimensional structure of recombinant human muscle fatty acid-binding protein, J Biol Chem, vol.267, pp.18541-18550, 1992. ,
Genomic functional annotation using co-evolution profiles of gene clusters, Genome Biol, vol.3, pp.121-129, 2002. ,
How do thermophilic proteins deal with heat?, Cellular and Molecular Life Sciences, vol.58, issue.9, pp.1216-1233, 2001. ,
DOI : 10.1007/PL00000935
Structural and Genomic Correlates of Hyperthermostability, Journal of Biological Chemistry, vol.275, issue.42, pp.32383-32386, 2000. ,
DOI : 10.1074/jbc.C000497200
Identification of thermophilic species by the amino acid compositions deduced from their genomes, Nucleic Acids Research, vol.29, issue.7, pp.1608-1615, 2001. ,
DOI : 10.1093/nar/29.7.1608
A simple method for displaying the hydropathic character of a protein, Journal of Molecular Biology, vol.157, issue.1, pp.105-132, 1982. ,
DOI : 10.1016/0022-2836(82)90515-0
Bivalent cations and amino-acid composition contribute to the thermostability of Bacillus licheniformis xylose isomerase, European Journal of Biochemistry, vol.41, issue.23, pp.6291-6301, 2001. ,
DOI : 10.1046/j.0014-2956.2001.02587.x
Phylogeny: A non-hyperthermophilic ancestor for Bacteria, Nature, vol.141, issue.6886, p.244, 2002. ,
DOI : 10.1016/S0168-9525(00)01980-6
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events, Nucleic Acids Research, vol.32, issue.90001, pp.273-276, 2004. ,
DOI : 10.1093/nar/gkh053
Who's your neighbor? New computational approaches for functional genomics, Nature Biotechnology, vol.14, issue.6, pp.609-613, 2000. ,
DOI : 10.1038/76443
Functional links between proteins, Nature, pp.402-425, 1999. ,
Computational genetics: finding protein function by nonhomology methods, Current Opinion in Structural Biology, vol.10, issue.3, pp.359-365, 2000. ,
DOI : 10.1016/S0959-440X(00)00097-X
A combined algorithm for genome-wide prediction of protein function, Nature, pp.402-83, 1999. ,
Functional associations of proteins in entire genomes via exhaustive detection of gene fusion, 2001. ,
STRING: a database of predicted functional associations between proteins, Nucleic Acids Research, vol.31, issue.1, pp.31-258, 2003. ,
DOI : 10.1093/nar/gkg034
Predictome: a database of putative functional links between proteins, Nucleic Acids Research, vol.30, issue.1, pp.306-309, 2002. ,
DOI : 10.1093/nar/30.1.306
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997. ,
DOI : 10.1093/nar/25.17.3389
A Genomic Perspective on Protein Families, Science, vol.278, issue.5338, pp.631-637, 1997. ,
DOI : 10.1126/science.278.5338.631
The COG database: new developments in phylogenetic classification of proteins from complete genomes, Nucleic Acids Research, vol.29, issue.1, pp.22-28, 2001. ,
DOI : 10.1093/nar/29.1.22
Phydbac (phylogenomic display of bacterial genes): an interactive resource for the annotation of bacterial genomes, Nucleic Acids Research, vol.31, issue.13, pp.31-3720, 2003. ,
DOI : 10.1093/nar/gkg603
T-coffee: a novel method for fast and accurate multiple sequence alignment, Journal of Molecular Biology, vol.302, issue.1, pp.205-217, 2000. ,
DOI : 10.1006/jmbi.2000.4042
The Protein Data Bank, Nucleic Acids Res. J. Med. Chem, vol.28, issue.40, pp.898-902, 1997. ,
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential, Folding and Design, vol.2, issue.3, pp.173-181, 1997. ,
DOI : 10.1016/S1359-0278(97)00024-2
The Protein Data Bank, Nucleic Acids Research, vol.28, issue.1, pp.235-242, 2000. ,
DOI : 10.1093/nar/28.1.235
Acta Cryst, pp.905-921, 1998. ,
Acta Cryst, 1990. ,
Analysis of domain motions by approximate normal mode calculations, Proteins: Structure, Function, and Genetics, vol.14, issue.3, pp.417-429, 1998. ,
DOI : 10.1002/(SICI)1097-0134(19981115)33:3<417::AID-PROT10>3.0.CO;2-8
The Crystal Structure of Glutamine-binding Protein fromEscherichia coli, Journal of Molecular Biology, vol.262, issue.2, pp.225-242, 1996. ,
DOI : 10.1006/jmbi.1996.0509
Acta Cryst, 2001. ,
Normal mode refinement: Crystallographic refinement of protein dynamic structure, Journal of Molecular Biology, vol.225, issue.2, pp.477-486, 1992. ,
DOI : 10.1016/0022-2836(92)90933-B
Acta Cryst, 1996. ,
Acta Cryst, A50, pp.157-163, 1994. ,
Comparative Protein Modelling by Satisfaction of Spatial Restraints, Journal of Molecular Biology, vol.234, issue.3, pp.779-815, 1993. ,
DOI : 10.1006/jmbi.1993.1626
ElNe Âmo Examples, 2004. ,
Conformational change of proteins arising from normal mode calculations, Protein Engineering Design and Selection, vol.14, issue.1, pp.1-6, 2001. ,
DOI : 10.1093/protein/14.1.1
Normal modes as refinement parameters for the F-actin model, Biophysical Journal, vol.68, issue.1, pp.5-12, 1995. ,
DOI : 10.1016/S0006-3495(95)80156-6
ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement, Nucleic Acids Research, vol.32, issue.Web Server, pp.610-614, 2004. ,
DOI : 10.1093/nar/gkh368
URL : https://hal.archives-ouvertes.fr/hal-00344557
Normal Mode Analysis With Simplified Models To Investigate The Global Dynamics Of Biological Systems, Protein & Peptide Letters, vol.10, issue.2, pp.119-132, 2003. ,
DOI : 10.2174/0929866033479077
Dynamics of a small globular protein in terms of low-frequency vibrational modes., Proc. Natl Acad, 1983. ,
DOI : 10.1073/pnas.80.12.3696
Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor., Proc. Natl Acad. Sci. USA, pp.6571-6575, 1983. ,
DOI : 10.1073/pnas.80.21.6571
DIMB: diagonalization in a mixed basis: a method to compute low-frequency normal modes for large macromolecules, Biopolymers, vol.33, pp.569-611, 1993. ,
A new approach for determining low-frequency normal modes in macromolecules, Biopolymers, vol.81, issue.6, p.759, 1994. ,
DOI : 10.1002/bip.360340608
Hinge-bending motion in citrate synthase arising from normal mode calculations, Proteins: Structure, Function, and Genetics, vol.112, issue.4, pp.557-560, 1995. ,
DOI : 10.1002/prot.340230410
Building-block approach for determining low-frequency normal modes of macromolecules, Proteins: Structure, Function, and Genetics, vol.77, issue.1, pp.1-7, 2000. ,
DOI : 10.1002/1097-0134(20001001)41:1<1::AID-PROT10>3.0.CO;2-P
A Coarse-Grained Normal Mode Approach for Macromolecules:An Efficient Implementation and Application to Ca2+-ATPase, Biophysical Journal, vol.83, issue.5, pp.2457-2474, 2002. ,
DOI : 10.1016/S0006-3495(02)75257-0
Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis, Physical Review Letters, vol.77, issue.9, pp.1905-1908, 1996. ,
DOI : 10.1103/PhysRevLett.77.1905
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential, Folding and Design, vol.2, issue.3, pp.173-181, 1997. ,
DOI : 10.1016/S1359-0278(97)00024-2
Analysis of domain motions by approximate normal mode calculations, Proteins: Structure, Function, and Genetics, vol.14, issue.3, pp.417-429, 1998. ,
DOI : 10.1002/(SICI)1097-0134(19981115)33:3<417::AID-PROT10>3.0.CO;2-8
Conformational change of proteins arising from normal mode calculations, Protein Engineering Design and Selection, vol.14, issue.1, pp.1-6, 2001. ,
DOI : 10.1093/protein/14.1.1
Simplified Normal Mode Analysis of Conformational Transitions in DNA-dependent Polymerases: the Elastic Network Model, Journal of Molecular Biology, vol.320, issue.5, pp.1011-1024, 2002. ,
DOI : 10.1016/S0022-2836(02)00562-4
Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy, Proc. Natl Acad. Sci. USA, pp.9319-9323, 2003. ,
DOI : 10.1016/0263-7855(96)00018-5
Normal mode analysis of macromolecular motions in a database framework: Developing mode concentration as a useful classifying statistic, Proteins: Structure, Function, and Genetics, vol.29, issue.4, pp.682-695, 2002. ,
DOI : 10.1002/prot.10168
Dynamical Properties of the MscL of Escherichia coli: A Normal Mode Analysis, Journal of Molecular Biology, vol.332, issue.3, pp.657-674, 2003. ,
DOI : 10.1016/S0022-2836(03)00851-9
An elastic network model of HK97 capsid maturation, Journal of Structural Biology, vol.143, issue.2, pp.107-117, 2003. ,
DOI : 10.1016/S1047-8477(03)00126-6
Transconformations of the SERCA1 Ca-ATPase: A Normal Mode Study, Biophysical Journal, vol.85, issue.4, pp.2186-2197, 2003. ,
DOI : 10.1016/S0006-3495(03)74644-X
URL : https://hal.archives-ouvertes.fr/hal-00015419
Tertiary and quaternary conformational changes in aspartate transcarbamylase: a normal mode study, Proteins: Structure, Function, and Genetics, vol.24, issue.1, pp.96-112, 1999. ,
DOI : 10.1002/(SICI)1097-0134(19990101)34:1<96::AID-PROT8>3.0.CO;2-0
Analysis of domain motions in large proteins, Proteins: Structure, Function, and Genetics, vol.257, issue.3, pp.369-382, 1999. ,
DOI : 10.1002/(SICI)1097-0134(19990215)34:3<369::AID-PROT9>3.0.CO;2-F
Experimental Verification of Conformational Variation of Human Fatty Acid Synthase as Predicted by Normal Mode Analysis, Structure, vol.12, issue.2, pp.185-191, 2004. ,
DOI : 10.1016/j.str.2004.01.015
On the potential of normal-mode analysis for solving difficult molecular-replacement problems, Acta Crystallographica Section D Biological Crystallography, vol.60, issue.4, pp.796-799, 2004. ,
DOI : 10.1107/S0907444904001982
URL : https://hal.archives-ouvertes.fr/hal-00344562
Dynamics of large proteins through hierarchical levels of coarse-grained structures, Journal of Computational Chemistry, vol.106, issue.1, pp.119-127, 2002. ,
DOI : 10.1002/jcc.1160
Computation of low-frequency normal modes in macromolecules: Improvements to the method of diagonalization in a mixed basis and application to hemoglobin, Computers & Chemistry, vol.19, issue.3, pp.241-246, 1995. ,
DOI : 10.1016/0097-8485(95)00011-G
Use of Non-crystallographic Symmetry in Protein Structure Refinement, Acta Crystallographica Section D Biological Crystallography, vol.52, issue.4, pp.842-857, 1996. ,
DOI : 10.1107/S0907444995016477
The Protein Data Bank, Nucleic Acids Research, vol.28, issue.1, pp.235-242, 2000. ,
DOI : 10.1093/nar/28.1.235
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, Journal of Applied Crystallography, vol.24, issue.5, pp.946-950, 1991. ,
DOI : 10.1107/S0021889891004399
VMD: Visual molecular dynamics, Journal of Molecular Graphics, vol.14, issue.1, pp.33-38, 1996. ,
DOI : 10.1016/0263-7855(96)00018-5
Stratosphere-troposphere exchange, Reviews of Geophysics, vol.51, issue.2, pp.403-439, 1995. ,
DOI : 10.1029/95RG02097
Biomass burning as a source of atmospheric gases CO, H2, N2O, NO, CH3Cl and COS, Nature, vol.11, issue.5736, pp.253-356, 1979. ,
DOI : 10.1175/1520-0469(1977)034<0143:NPIL>2.0.CO;2
Observations of Near-Zero Ozone Concentrations Over the Convective Pacific: Effects on Air Chemistry, Science, vol.274, issue.5285, pp.230-233, 1996. ,
DOI : 10.1126/science.274.5285.230
The MOZAIC programme. EUROTRAC Newsl, pp.2-7, 1996. ,
Influence of plumes from biomass burning on atmospheric chemistry over the equatorial and tropical South Atlantic during CITE 3, Journal of Geophysical Research, vol.97, issue.D6, pp.12793-12809, 1994. ,
DOI : 10.1029/94JD00263
Photochemically produced ozone in the emission from large-scale tropical vegetation fires, Journal of Geophysical Research, vol.200, issue.D1, pp.2425-2429, 1985. ,
DOI : 10.1029/JD090iD01p02425
Ozone and oxides of nitrogen production during thunderstorms, Journal of Geophysical Research, vol.5, issue.3, pp.943-950, 1977. ,
DOI : 10.1029/JC082i006p00943
Ozone and point discharge measurements under thunderclouds, Journal of Geophysical Research, vol.77, issue.3, pp.4500-4510, 1972. ,
DOI : 10.1029/JC077i024p04500
Ozone production during thunderstorms, measured by the absorption of ultraviolet radiation from lightning, Journal of Geophysical Research, vol.10, issue.14, pp.3557-3561, 1967. ,
DOI : 10.1029/JZ072i014p03557
Aircraft observations of extreme ozone concentrations near thunderstorms, Atmospheric Environment (1967), vol.19, issue.7, pp.1175-1179, 1985. ,
DOI : 10.1016/0004-6981(85)90201-X
New evidence for the stratospheric dehydration mechanism in the equatorial Pacific, Geophysical Research Letters, vol.100, issue.23, pp.3235-3238, 1995. ,
DOI : 10.1029/95GL02940
The tropical experiment of the Stratosphere-Troposphere Exchange Project (STEP): Science objectives, operations, and summary findings, Journal of Geophysical Research: Atmospheres, vol.98, issue.D5, pp.8563-8589, 1993. ,
DOI : 10.1029/92JD02521
Cirrus Outflow Dynamics, Journal of the Atmospheric Sciences, vol.45, issue.10, pp.1594-1605, 1988. ,
DOI : 10.1175/1520-0469(1988)045<1594:COD>2.0.CO;2
On the nature of the summit areas of severe storms in Oklahoma, Quarterly Journal of the Royal Meteorological Society, vol.11, issue.397, pp.318-336, 1967. ,
DOI : 10.1002/qj.49709339704
ATMOSPHERIC GUSTS???A REVIEW OF THE RESULTS OF SOME RECENT RESEARCH AT THE ROYAL AIRCRAFT ESTABLISHMENT, Monthly Weather Review, vol.98, issue.10, pp.723-734, 1970. ,
DOI : 10.1175/1520-0493(1970)098<0723:AGAROT>2.3.CO;2
Some measurements of cumulonimbus tops in the pre-monsoon season in north-east India, Meteorol. Mag, vol.102, pp.314-332, 1973. ,
A dehydration mechanism for the stratosphere, Geophysical Research Letters, vol.38, issue.6, pp.605-608, 1982. ,
DOI : 10.1029/GL009i006p00605
In situ evidence of rapid, vertical, irreversible transport of lower tropospheric air into the lower tropical stratosphere by convective cloud turrets and by larger-scale upwelling in tropical cyclones, Journal of Geophysical Research: Atmospheres, vol.12, issue.D5, pp.8665-8681, 1993. ,
DOI : 10.1029/92JD02954
Measurements of high number densities of ice crystals in the tops of tropical cumulonimbus, Journal of Geophysical Research: Atmospheres, vol.23, issue.D5, pp.8639-8664, 1993. ,
DOI : 10.1029/92JD02525
Warm Upper-Level Downdrafts Associated with a Squall Line, Monthly Weather Review, vol.121, issue.10, pp.2919-2927, 1993. ,
DOI : 10.1175/1520-0493(1993)121<2919:WULDAW>2.0.CO;2
Walker circulation and tropical upper tropospheric water vapor, Journal of Geophysical Research: Atmospheres, vol.91, issue.D1, pp.1961-1974, 1996. ,
DOI : 10.1029/95JD02275
Fragmentation of stratospheric intrusions, Journal of Geophysical Research: Atmospheres, vol.113, issue.D1, pp.1435-1456, 1996. ,
DOI : 10.1029/95JD02674
Vertical fine-scale atmospheric structure measured from NASA DC-8 during PEM-West A, Journal of Geophysical Research: Atmospheres, vol.101, issue.D1, pp.1943-1960, 1996. ,
DOI : 10.1029/95JD02613
Large-scale air mass characteristics observed over western Pacific during summertime, Journal of Geophysical Research: Atmospheres, vol.97, issue.D1, pp.1691-1712, 1996. ,
DOI : 10.1029/95JD02200