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A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies

 Bastien Boussau , Laurent Guéguen , Manolo Gouy
Evolutionary Bioinformatics, 2009, 5, pp.67-79. ⟨10.4137/EBO.S2242⟩
Article dans une revue hal-00428395v1
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Structural sensitivity calculated with a local stability analysis

 Matthew Juniper , Benoît Pier
Euromech Fluid Mechanics Conference 8, Sep 2010, Bad Reichenhall, Germany
Communication dans un congrès hal-00632317v1

Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae

 Tristan Lefébure , P. Richards Vince , Ping Lang , Paulina Pavinski Bitar , J. Stanhope Michael
PLoS ONE, 2012, 7 (5), pp.1-11. ⟨10.1371/journal.pone.0037607⟩
Article dans une revue halsde-00705729v1

Neural dynamics of the intention to speak.

 Francesca Carota , Andres Posada , Sylvain Harquel , Claude Delpuech , Olivier Bertrand , et al.
Cerebral Cortex, 2010, 20 (8), pp.1891-7. ⟨10.1093/cercor/bhp255⟩
Article dans une revue hal-00627591v1

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

 Jean-François Dufayard , L. Duret , Simon Penel , Manolo Gouy , F. Rechenmann , et al.
Bioinformatics, 2005, 21 (11), pp.2596-603. ⟨10.1093/bioinformatics/bti325⟩
Article dans une revue hal-00427861v1

Efficient Exploration of the Space of Reconciled Gene Trees.

 Gergely J Szöllosi , Wojciech Rosikiewicz , Bastien Boussau , Eric Tannier , Vincent Daubin
Systematic Biology, 2013, 62 (6), pp.901-912. ⟨10.1093/sysbio/syt054⟩
Article dans une revue hal-00856826v1

PhEVER: a database for the global exploration of virus-host evolutionary relationships.

 Leonor Palmeira , Simon Penel , Vincent Lotteau , Chantal Rabourdin-Combe , Christian Gautier
Nucleic Acids Research, 2011, 39 (Database issue), pp.D569-75. ⟨10.1093/nar/gkq1013⟩
Article dans une revue hal-00562509v1
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Monte Carlo simulations of prompt-gamma emission during carbon ion irradiation

 F. Le Foulher , M. Bajard , M. Chevallier , D. Dauvergne , N. Freud , et al.
IEEE Transactions on Nuclear Science, 2010, 57 (5), pp.2768-2772
Article dans une revue in2p3-00480024v1
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Medical images simulation storage and processing on the European DataGrid testbed

 Johan Montagnat , F. Bellet , Hugues Benoit-Cattin , Vincent Breton , Lionel Brunie , et al.
Journal of Grid Computing, 2004, 2, pp.387-400. ⟨10.1007/s10723-004-5744-y⟩
Article dans une revue in2p3-00023294v1
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Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy

 Nicolas Olivier , Miguel Angel Luengo-Oroz , Louise Duloquin , Emmanuel Faure , Thierry Savy , et al.
Science, 2010, 329 (5994), pp.967-71. ⟨10.1126/science.1189428⟩
Article dans une revue hal-00519834v1
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Global nonlinear dynamics of thin aerofoil wakes

 Benoît Pier , Nigel Peake
Seventh IUTAM Symposium on Laminar-Turbulent Transition, Jun 2009, Stockholm, Sweden. pp.319-324, ⟨10.1007/978-90-481-3723-7_51⟩
Communication dans un congrès istex hal-00633233v1
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Periodic and quasiperiodic vortex shedding in the wake of a rotating sphere

 Benoît Pier
Journal of Fluids and Structures, 2013, 41, pp.43-50. ⟨10.1016/j.jfluidstructs.2012.09.002⟩
Article dans une revue hal-00733514v1
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Anomalous subdiffusion due to obstacles : A critical survey

 Hugues Berry , Hugues Chaté
2011
Autre publication scientifique inria-00575651v1
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Grid as a bioinformatic tool

 N. Jacq , Christophe Blanchet , C. Combet , E. Cornillot , L. Duret , et al.
Parallel Computing, 2004, 30, pp.1093-1107. ⟨10.1016/j.parco.2004.07.013⟩
Article dans une revue in2p3-00023218v1
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Utilisation de grilles de calcul pour la génomique comparative

 Simon Penel , Christophe Blanchet , Pascal Calvat , Yonny Cardenas , Clement Gauthey , et al.
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Communication dans un congrès hal-00653022v1
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Parallelization of monte Carlo simulations and submission to a grid environment

 L. Maigne , D. Hill , P. Calvat , Vincent Breton , Delphine Lazaro , et al.
HealthGRID 2004, Jan 2004, Clermont-Ferrand, France. pp.177-196
Communication dans un congrès in2p3-00023432v1

Segmentation of cells from 3-D confocal images of live zebrafish embryo.

 Cecilia Zanella , Barbara Rizzi , Camilo Melani , Matteo Campana , Paul Bourgine , et al.
Conference proceedings : .. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference, 2007, 2007, pp.6028-31. ⟨10.1109/IEMBS.2007.4353722⟩
Article dans une revue hal-00275363v1

A Hybrid Approach for Fast Simulation of Dose Deposition in Stereotactic Synchrotron Radiotherapy

 Nicolas Freud , Jean Michel Létang , Mary Corentin , Caroline Boudou , Claudio Ferrero , et al.
IEEE Transactions on Nuclear Science, 2008, 55 (3), pp.1008 - 1017. ⟨10.1109/TNS.2008.922831⟩
Article dans une revue hal-00639671v1

Design Guidelines for a Double Scattering Compton Camera for Prompt-gamma Imaging During Ion Beam Therapy: A Monte Carlo Simulation Study

 M.-H. Richard , M. Chevallier , D. Dauvergne , N. Freud , P. Henriquet , et al.
IEEE Transactions on Nuclear Science, 2010, 58, pp.87-94. ⟨10.1109/TNS.2010.2076303⟩
Article dans une revue in2p3-00527432v1

The GC-heterogeneity of teleost fishes

 C. Melodelima , Christian Gautier
BMC Genomics, 2008, 9 (1), pp.632. ⟨10.1186/1471-2164-9-632⟩
Article dans une revue halsde-00377984v1
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Methodological Development of the Conditional Sampling Method. Part II: Quality Control Criteria of Relaxed Eddy Accumulation Flux Measurements

 A. Fotiadi , Fabienne Lohou , A. Druilhet , Dominique Serça , F. Saïd , et al.
Boundary-Layer Meteorology, 2005, 117 (3), pp.577-603. ⟨10.1007/s10546-005-4497-x⟩
Article dans une revue hal-00023218v1

Can Voronoi diagram model cell geometries in early sea-urchin embryogenesis ?

 Miguel Angel Luengo-Oroz , Louise Duloquin , Carlos Castro-González , Thierry Savy , Emmanuel Faure , et al.
Biomedical Imaging: From Nano to Macro, IEEE, pp.504-507, 2008, IEEE International Symposium on Biomedical Imaging Vomues 1-4, 978-1-4244-2002-5. ⟨10.1109/ISBI.2008.4541043⟩
Chapitre d'ouvrage hal-00723387v1
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Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge.

 Keelin Murphy , Bram van Ginneken , Joseph M. Reinhardt , Sven Kabus , Kai Ding , et al.
IEEE Transactions on Medical Imaging, 2011, 30 (11), pp.1901-20. ⟨10.1109/TMI.2011.2158349⟩
Article dans une revue inserm-00607794v1

GATE V6: a major enhancement of the GATE simulation platform enabling modelling of CT and radiotherapy

 S. Jan , D. Benoit , E. Becheva , T. Carlier , F. Cassol , et al.
Physics in Medicine and Biology, 2011, 56, pp.881-901. ⟨10.1088/0031-9155/56/4/001⟩
Article dans une revue istex in2p3-00559709v1

Methods toward in vivo measurement of zebrafish epithelial and deep cell proliferation.

 Matteo Campana , Benoit Maury , Marie Dutreix , Nadine Peyriéras , Alessandro Sarti
Computer Methods and Programs in Biomedicine, 2009, 98 (2), pp.103-117. ⟨10.1016/j.cmpb.2009.08.008⟩
Article dans une revue istex hal-00444523v1

Two experiments with application-level quality of service on the EGEE grid

 Pascal Calvat , Tristan Glatard , Sorina Camarasu-Pop , Ching Chuen Teck Mark , Tan Wen-Jun
GMAC '10, Jun 2010, Washington, United States. pp.ISBN: 978-1-4503-0100-8, ⟨10.1145/1809029.1809031⟩
Communication dans un congrès hal-00622791v1
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L’évolution modulaire des protéines : un point de vue phylogénétique

 Anne-Sophie Sertier
Sciences agricoles. Université Claude Bernard - Lyon I, 2011. Français. ⟨NNT : 2011LYO10153⟩
Thèse tel-00842255v1
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Periodic and quasiperiodic vortex shedding in the wake of a spinning sphere

 Benoît Pier
Euromech Fluid Mechanics Conference 8, Sep 2010, Bad Reichenhall, Germany
Communication dans un congrès hal-00632313v1

Separate valuation subsystems for delay and effort decision costs.

 Charlotte Prévost , Mathias Pessiglione , Elise Météreau , Marie-Laure Cléry-Melin , Jean-Claude Dreher
Journal of Neuroscience, 2010, 30 (42), pp.14080-90. ⟨10.1523/JNEUROSCI.2752-10.2010⟩
Article dans une revue hal-00638182v1

Selective structure-based virtual screening for full and partial agonists of the beta2 adrenergic receptor.

 Chris de Graaf , Didier Rognan
Journal of Medicinal Chemistry, 2008, 51 (16), pp.4978-85. ⟨10.1021/jm800710x⟩
Article dans une revue istex hal-00620778v1
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